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The map label for this gene is lpfC [H]

Identifier: 238892628

GI number: 238892628

Start: 416211

End: 418760

Strand: Reverse

Name: lpfC [H]

Synonym: KP1_0410

Alternate gene names: 238892628

Gene position: 418760-416211 (Counterclockwise)

Preceding gene: 238892629

Following gene: 238892627

Centisome position: 7.98

GC content: 53.73

Gene sequence:

>2550_bases
GTGTCTATGCCAAATAAGAATAATGGATTATTCAAACTATCCACCGTCTTTCTCGCAATGCTTCCGGCATTGCTTTCTGG
TTTGAATAATAAAGCGCAAGCACGTGACTTTTTCGATCCCTCATTCATTAGCTCATTGAATGGTAGCGATCCATCAACCA
CTCCCGATTTATCCATATTTCAGACTCAGAACGCGCAGGCGCCAGGGGATTATCGGGTCGATATTATGTTTAATGGCCGC
TACCTGGACACCAGGACCATAAAGTTTGTCGCCAACAATCGCGCCAGCAGCGATAACCGCGAACCCGCTCTGGTTCCCTG
CCTGAGTCTAAAAGCACTCGCGGAATATGGCGTAAGGATAAAAGCCTTTCCAGAGTTAGCCGAGGATCAAAACGGCTGTG
CAAACTTTTCTGTCATTCCTGACACCAAAGCAGATTTTGACTTTACCGCCCAGCGCTTAAATATCTCTATTCCGCAGGCG
GCCTTATCCACCACCGCACAGGGATATATTCCACCGGATCAGTTTGATGACGGCATCAACGCGTTATTGGTGAACTATCA
GTTCAGCGGCTCAAACGACATGCAGGCCAATAATGAATACTACAGTCTGAATCTGCAGTCCGGCCTCAACGTTGGCCCGT
GGCGCATCCGTAACCTCAGCACCTGGAATAAAAACAACAGCGGTGCCGGGGACTGGGATTCCGCCTATCTCTATATGCAG
CGCAGCATCCGCTCCATCAACAGTAACCTTGTGATGGGTGAGAGTTCATCGCTCAACGGTATCTTCGACAGCGTGCCGTT
TACCGGTATTCAGCTGGCCACCGATACGACGATGTTGCCGGAAAGTATGCGCGGCTATGCGCCAATTATTCGCGGTATCG
CCAGAACCAATGCCCGCGTCATCATTAAACAAAACGGCTATCAGGTATACCAGACCTATGTCGCTCCCGGGGCGTTTGAA
ATCACCGATATGTACCCGAGCGGCGGTAGCGGCGACCTTTACGTCACAGTGGAGGAATCCGACGGATCGAAACAAGAATT
TGTCGTGCCGTTCGCCACCCTGCCGGTGATGGTCCGTGAGGATCAGCTGGAATATGAGATCACATCTGGTAAATATCGCC
CGTACGATGGCGGAGTCGATGAAACGCCGTTTACCCAAGCCACCGCGACCTACGGCGTCTCCAGCAGCATGACGCTATAT
GGCGGCATGCAGGCGGCTTCGCGATATCAGGCGCTGTCGACAGGGCTTGGCTATAACCTTGGTGAACTGGGCGCCGCCTC
GGCAGACGTCACCCAGGCCTGGTCAAAAATGAAAGAGAATGAAAAGACCTCCGGACAGTCCTGGCGTGTTCGTTACGGGA
AAAACATTCTTGAAACGGGTACAAACGTGACCATCGCCGGCTACCGCTACTCCACTCGCGGATTTCATACTCTCTCAGAG
GTCCTGGATAGCTACTCTAATGACGGCTACTACACTTCGCGCTCGCTGCGCAACCGTACCAATTTGACGGTTAACCAAAG
CCTGGGTAAAGGTCTCGGTAGCCTGTCGGTAAGCGGATTAATCGAAGATTACTGGGATGATAAGCGTACCAACAAGTCGA
TCAGTGTGGGGTACAACGGCGGTTTCCGCAATGTGAACTACTACCTCGGCTACAGCTATAACCGCTATACCTGGAGCGGA
GATAACTCCGGGAAAGACGCCCGGGACGACCAGCGCATTACACTGACCGTAACGCTGCCGCTGAGCAATTGGCTGCCTGG
CACCTACACCAGCTATCAGTTAACCAACAGCAATCCGGGATCAACCGATCAGTCGGTTTCCATCGGTGGTAATGCGCTGG
AGAACGATAGCCTGGAGTGGAGCCTGCAGCAAGGGTACAGCAACCGGGAATACTACAGCGGCGATATGCGGGCGACCTAT
AACGGTGCCCGCGGCAGCGTCAACGCTGGCTACAGCTATGATCGCAGCAGCGAGCGCATTGACTACGGCGCCAACGGCAG
TATCGTTGCTCATGCCGATGGCATCACTCTGGGTCAGGACATCACCGACGCAGCGGTACTGGTTAAAGCGCCGGGGCTGG
ATAACGTCAGACTGACTAACGACAACACCATTTCTACCGACTATCGCGGCTACGCCATCGTCCCATATGTAACACCATAC
CGTCGCACCGATATTACGCTCGACAGCTCCACGCTTGGCGAAGATATGGAGCTGCCGGAAACCACGCAGAGCGTCGTTCC
GACGCGCGGCGCCATCGTGCGTGCAAACTATGCCGGCAATATCGGCCAGCGGGCCTTTGTGCATCTGAAAACCGCCAGCG
GTCAGGACGTGCCTTATGGCGCGATGGTTCTACTCGTCGGCGACAGCAAATCGCAGCCAAGCATCGTTAGCGATGCCGGT
ATGGTCTATATGTCCGGGTTGCAGCAGACCGGGATCCTTAACGTCCAGTGGGGCAAAAGCGCAGCACAGCAGTGCAATGC
TTCATTTACTTTACCGGCCAGGGAAGGCAAAGCGTCTGGCATCAGTCAAATCGAAACGATTTGCCGGTAA

Upstream 100 bases:

>100_bases
CCTCCAGCATTACCTGGAAAGTGGTCAATGATTATGGCGGAGCAGGGTCGCTCTATTCCTCATCGCTGTAATAAGAAATT
TATTTTATCATTATAGGGAT

Downstream 100 bases:

>100_bases
GCATTCATAGGGGAAAGGTATTAATGAAAAGAATATTTATTCTAATGACATTACTGATACTTGGCAGCGAGGCTACTGCT
AAGTGTACATATGATGGTAA

Product: putative fimbrial biogenesis outer membrane usher protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 849; Mature: 848

Protein sequence:

>849_residues
MSMPNKNNGLFKLSTVFLAMLPALLSGLNNKAQARDFFDPSFISSLNGSDPSTTPDLSIFQTQNAQAPGDYRVDIMFNGR
YLDTRTIKFVANNRASSDNREPALVPCLSLKALAEYGVRIKAFPELAEDQNGCANFSVIPDTKADFDFTAQRLNISIPQA
ALSTTAQGYIPPDQFDDGINALLVNYQFSGSNDMQANNEYYSLNLQSGLNVGPWRIRNLSTWNKNNSGAGDWDSAYLYMQ
RSIRSINSNLVMGESSSLNGIFDSVPFTGIQLATDTTMLPESMRGYAPIIRGIARTNARVIIKQNGYQVYQTYVAPGAFE
ITDMYPSGGSGDLYVTVEESDGSKQEFVVPFATLPVMVREDQLEYEITSGKYRPYDGGVDETPFTQATATYGVSSSMTLY
GGMQAASRYQALSTGLGYNLGELGAASADVTQAWSKMKENEKTSGQSWRVRYGKNILETGTNVTIAGYRYSTRGFHTLSE
VLDSYSNDGYYTSRSLRNRTNLTVNQSLGKGLGSLSVSGLIEDYWDDKRTNKSISVGYNGGFRNVNYYLGYSYNRYTWSG
DNSGKDARDDQRITLTVTLPLSNWLPGTYTSYQLTNSNPGSTDQSVSIGGNALENDSLEWSLQQGYSNREYYSGDMRATY
NGARGSVNAGYSYDRSSERIDYGANGSIVAHADGITLGQDITDAAVLVKAPGLDNVRLTNDNTISTDYRGYAIVPYVTPY
RRTDITLDSSTLGEDMELPETTQSVVPTRGAIVRANYAGNIGQRAFVHLKTASGQDVPYGAMVLLVGDSKSQPSIVSDAG
MVYMSGLQQTGILNVQWGKSAAQQCNASFTLPAREGKASGISQIETICR

Sequences:

>Translated_849_residues
MSMPNKNNGLFKLSTVFLAMLPALLSGLNNKAQARDFFDPSFISSLNGSDPSTTPDLSIFQTQNAQAPGDYRVDIMFNGR
YLDTRTIKFVANNRASSDNREPALVPCLSLKALAEYGVRIKAFPELAEDQNGCANFSVIPDTKADFDFTAQRLNISIPQA
ALSTTAQGYIPPDQFDDGINALLVNYQFSGSNDMQANNEYYSLNLQSGLNVGPWRIRNLSTWNKNNSGAGDWDSAYLYMQ
RSIRSINSNLVMGESSSLNGIFDSVPFTGIQLATDTTMLPESMRGYAPIIRGIARTNARVIIKQNGYQVYQTYVAPGAFE
ITDMYPSGGSGDLYVTVEESDGSKQEFVVPFATLPVMVREDQLEYEITSGKYRPYDGGVDETPFTQATATYGVSSSMTLY
GGMQAASRYQALSTGLGYNLGELGAASADVTQAWSKMKENEKTSGQSWRVRYGKNILETGTNVTIAGYRYSTRGFHTLSE
VLDSYSNDGYYTSRSLRNRTNLTVNQSLGKGLGSLSVSGLIEDYWDDKRTNKSISVGYNGGFRNVNYYLGYSYNRYTWSG
DNSGKDARDDQRITLTVTLPLSNWLPGTYTSYQLTNSNPGSTDQSVSIGGNALENDSLEWSLQQGYSNREYYSGDMRATY
NGARGSVNAGYSYDRSSERIDYGANGSIVAHADGITLGQDITDAAVLVKAPGLDNVRLTNDNTISTDYRGYAIVPYVTPY
RRTDITLDSSTLGEDMELPETTQSVVPTRGAIVRANYAGNIGQRAFVHLKTASGQDVPYGAMVLLVGDSKSQPSIVSDAG
MVYMSGLQQTGILNVQWGKSAAQQCNASFTLPAREGKASGISQIETICR
>Mature_848_residues
SMPNKNNGLFKLSTVFLAMLPALLSGLNNKAQARDFFDPSFISSLNGSDPSTTPDLSIFQTQNAQAPGDYRVDIMFNGRY
LDTRTIKFVANNRASSDNREPALVPCLSLKALAEYGVRIKAFPELAEDQNGCANFSVIPDTKADFDFTAQRLNISIPQAA
LSTTAQGYIPPDQFDDGINALLVNYQFSGSNDMQANNEYYSLNLQSGLNVGPWRIRNLSTWNKNNSGAGDWDSAYLYMQR
SIRSINSNLVMGESSSLNGIFDSVPFTGIQLATDTTMLPESMRGYAPIIRGIARTNARVIIKQNGYQVYQTYVAPGAFEI
TDMYPSGGSGDLYVTVEESDGSKQEFVVPFATLPVMVREDQLEYEITSGKYRPYDGGVDETPFTQATATYGVSSSMTLYG
GMQAASRYQALSTGLGYNLGELGAASADVTQAWSKMKENEKTSGQSWRVRYGKNILETGTNVTIAGYRYSTRGFHTLSEV
LDSYSNDGYYTSRSLRNRTNLTVNQSLGKGLGSLSVSGLIEDYWDDKRTNKSISVGYNGGFRNVNYYLGYSYNRYTWSGD
NSGKDARDDQRITLTVTLPLSNWLPGTYTSYQLTNSNPGSTDQSVSIGGNALENDSLEWSLQQGYSNREYYSGDMRATYN
GARGSVNAGYSYDRSSERIDYGANGSIVAHADGITLGQDITDAAVLVKAPGLDNVRLTNDNTISTDYRGYAIVPYVTPYR
RTDITLDSSTLGEDMELPETTQSVVPTRGAIVRANYAGNIGQRAFVHLKTASGQDVPYGAMVLLVGDSKSQPSIVSDAGM
VYMSGLQQTGILNVQWGKSAAQQCNASFTLPAREGKASGISQIETICR

Specific function: Involved in the export and assembly of lpfA fimbrial subunits across the outer membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial export usher family [H]

Homologues:

Organism=Escherichia coli, GI1787172, Length=875, Percent_Identity=38.0571428571429, Blast_Score=577, Evalue=1e-166,
Organism=Escherichia coli, GI1789533, Length=855, Percent_Identity=38.8304093567251, Blast_Score=570, Evalue=1e-163,
Organism=Escherichia coli, GI1790772, Length=881, Percent_Identity=36.8898978433598, Blast_Score=570, Evalue=1e-163,
Organism=Escherichia coli, GI1786744, Length=863, Percent_Identity=37.7752027809965, Blast_Score=566, Evalue=1e-162,
Organism=Escherichia coli, GI1786332, Length=853, Percent_Identity=30.3634232121923, Blast_Score=334, Evalue=1e-92,
Organism=Escherichia coli, GI1788427, Length=796, Percent_Identity=28.0150753768844, Blast_Score=312, Evalue=7e-86,
Organism=Escherichia coli, GI87081778, Length=802, Percent_Identity=27.5561097256858, Blast_Score=268, Evalue=1e-72,
Organism=Escherichia coli, GI1789610, Length=816, Percent_Identity=24.1421568627451, Blast_Score=149, Evalue=6e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000015
- InterPro:   IPR018030 [H]

Pfam domain/function: PF00577 Usher [H]

EC number: NA

Molecular weight: Translated: 92713; Mature: 92581

Theoretical pI: Translated: 4.80; Mature: 4.80

Prosite motif: PS01151 FIMBRIAL_USHER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSMPNKNNGLFKLSTVFLAMLPALLSGLNNKAQARDFFDPSFISSLNGSDPSTTPDLSIF
CCCCCCCCCEEEHHHHHHHHHHHHHHCCCCCHHHHCCCCHHHHHHCCCCCCCCCCCEEEE
QTQNAQAPGDYRVDIMFNGRYLDTRTIKFVANNRASSDNREPALVPCLSLKALAEYGVRI
EECCCCCCCCEEEEEEECCEEECCEEEEEEECCCCCCCCCCCCEEEHHHHHHHHHCCCEE
KAFPELAEDQNGCANFSVIPDTKADFDFTAQRLNISIPQAALSTTAQGYIPPDQFDDGIN
EECCCHHCCCCCCCCEEECCCCCCCCCEEEEEEEEECCHHHHHCCCCCCCCCHHCCCCCE
ALLVNYQFSGSNDMQANNEYYSLNLQSGLNVGPWRIRNLSTWNKNNSGAGDWDSAYLYMQ
EEEEEEEECCCCCCCCCCCEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHH
RSIRSINSNLVMGESSSLNGIFDSVPFTGIQLATDTTMLPESMRGYAPIIRGIARTNARV
HHHHHCCCCEEECCCCCCCCHHHCCCCCCEEEECCCCCCCHHHCCHHHHHHHHHCCCCEE
IIKQNGYQVYQTYVAPGAFEITDMYPSGGSGDLYVTVEESDGSKQEFVVPFATLPVMVRE
EEEECCEEEEEEEECCCEEEEEEECCCCCCCCEEEEEECCCCCCCEEEEEHHHCCEEEEC
DQLEYEITSGKYRPYDGGVDETPFTQATATYGVSSSMTLYGGMQAASRYQALSTGLGYNL
CCEEEEECCCEECCCCCCCCCCCCCCHHEECCCCCCEEEECCHHHHHHHHHHHHCCCCCH
GELGAASADVTQAWSKMKENEKTSGQSWRVRYGKNILETGTNVTIAGYRYSTRGFHTLSE
HHCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHCCCCEEEEEEEECCCCHHHHHH
VLDSYSNDGYYTSRSLRNRTNLTVNQSLGKGLGSLSVSGLIEDYWDDKRTNKSISVGYNG
HHHHHCCCCEEECHHHCCCCCEEEEHHHCCCCCCHHHHHHHHHHCCCCCCCCEEEEEECC
GFRNVNYYLGYSYNRYTWSGDNSGKDARDDQRITLTVTLPLSNWLPGTYTSYQLTNSNPG
CCCCEEEEEEECCCEEEECCCCCCCCCCCCCEEEEEEEEECCCCCCCCCEEEEEECCCCC
STDQSVSIGGNALENDSLEWSLQQGYSNREYYSGDMRATYNGARGSVNAGYSYDRSSERI
CCCCEEEECCCCCCCCCCEEEHHCCCCCCCEECCCCEEEECCCCCCCCCCCCCCCCCCCE
DYGANGSIVAHADGITLGQDITDAAVLVKAPGLDNVRLTNDNTISTDYRGYAIVPYVTPY
ECCCCCCEEEEECCCCCCCCCCCCEEEEECCCCCCEEECCCCEECCCCCCEEEEEEECCC
RRTDITLDSSTLGEDMELPETTQSVVPTRGAIVRANYAGNIGQRAFVHLKTASGQDVPYG
CCCEEEECCCCCCCCCCCCCHHHHHCCCCCEEEEEECCCCCCCEEEEEEECCCCCCCCCC
AMVLLVGDSKSQPSIVSDAGMVYMSGLQQTGILNVQWGKSAAQQCNASFTLPAREGKASG
EEEEEEECCCCCCCEECCCCCCEECCCCCCCEEEEECCCHHHHHCCCEEEEECCCCCCCC
ISQIETICR
HHHHHHHCC
>Mature Secondary Structure 
SMPNKNNGLFKLSTVFLAMLPALLSGLNNKAQARDFFDPSFISSLNGSDPSTTPDLSIF
CCCCCCCCEEEHHHHHHHHHHHHHHCCCCCHHHHCCCCHHHHHHCCCCCCCCCCCEEEE
QTQNAQAPGDYRVDIMFNGRYLDTRTIKFVANNRASSDNREPALVPCLSLKALAEYGVRI
EECCCCCCCCEEEEEEECCEEECCEEEEEEECCCCCCCCCCCCEEEHHHHHHHHHCCCEE
KAFPELAEDQNGCANFSVIPDTKADFDFTAQRLNISIPQAALSTTAQGYIPPDQFDDGIN
EECCCHHCCCCCCCCEEECCCCCCCCCEEEEEEEEECCHHHHHCCCCCCCCCHHCCCCCE
ALLVNYQFSGSNDMQANNEYYSLNLQSGLNVGPWRIRNLSTWNKNNSGAGDWDSAYLYMQ
EEEEEEEECCCCCCCCCCCEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHH
RSIRSINSNLVMGESSSLNGIFDSVPFTGIQLATDTTMLPESMRGYAPIIRGIARTNARV
HHHHHCCCCEEECCCCCCCCHHHCCCCCCEEEECCCCCCCHHHCCHHHHHHHHHCCCCEE
IIKQNGYQVYQTYVAPGAFEITDMYPSGGSGDLYVTVEESDGSKQEFVVPFATLPVMVRE
EEEECCEEEEEEEECCCEEEEEEECCCCCCCCEEEEEECCCCCCCEEEEEHHHCCEEEEC
DQLEYEITSGKYRPYDGGVDETPFTQATATYGVSSSMTLYGGMQAASRYQALSTGLGYNL
CCEEEEECCCEECCCCCCCCCCCCCCHHEECCCCCCEEEECCHHHHHHHHHHHHCCCCCH
GELGAASADVTQAWSKMKENEKTSGQSWRVRYGKNILETGTNVTIAGYRYSTRGFHTLSE
HHCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHCCCCEEEEEEEECCCCHHHHHH
VLDSYSNDGYYTSRSLRNRTNLTVNQSLGKGLGSLSVSGLIEDYWDDKRTNKSISVGYNG
HHHHHCCCCEEECHHHCCCCCEEEEHHHCCCCCCHHHHHHHHHHCCCCCCCCEEEEEECC
GFRNVNYYLGYSYNRYTWSGDNSGKDARDDQRITLTVTLPLSNWLPGTYTSYQLTNSNPG
CCCCEEEEEEECCCEEEECCCCCCCCCCCCCEEEEEEEEECCCCCCCCCEEEEEECCCCC
STDQSVSIGGNALENDSLEWSLQQGYSNREYYSGDMRATYNGARGSVNAGYSYDRSSERI
CCCCEEEECCCCCCCCCCEEEHHCCCCCCCEECCCCEEEECCCCCCCCCCCCCCCCCCCE
DYGANGSIVAHADGITLGQDITDAAVLVKAPGLDNVRLTNDNTISTDYRGYAIVPYVTPY
ECCCCCCEEEEECCCCCCCCCCCCEEEEECCCCCCEEECCCCEECCCCCCEEEEEEECCC
RRTDITLDSSTLGEDMELPETTQSVVPTRGAIVRANYAGNIGQRAFVHLKTASGQDVPYG
CCCEEEECCCCCCCCCCCCCHHHHHCCCCCEEEEEECCCCCCCEEEEEEECCCCCCCCCC
AMVLLVGDSKSQPSIVSDAGMVYMSGLQQTGILNVQWGKSAAQQCNASFTLPAREGKASG
EEEEEEECCCCCCCEECCCCCCEECCCCCCCEEEEECCCHHHHHCCCEEEEECCCCCCCC
ISQIETICR
HHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7721701; 11677609 [H]