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The map label for this gene is yjcO [H]

Identifier: 238892570

GI number: 238892570

Start: 355806

End: 356492

Strand: Reverse

Name: yjcO [H]

Synonym: KP1_0345

Alternate gene names: 238892570

Gene position: 356492-355806 (Counterclockwise)

Preceding gene: 238892571

Following gene: 238892567

Centisome position: 6.79

GC content: 58.95

Gene sequence:

>687_bases
ATGAAATACCTCTTTTTATTTCTACTGGTTTTCACCAGCGGCGCAGCGGTGGCCACCGAACCTGGCAGTCAGTATCAACA
GCAGGCCGAAGCCGGCGATCGACGCGCGCAATATTACCTTGCCGATACCTGGGTCAGCTCCGGCGATTATCAAAAAGCCG
AATACTGGGCGCAGAAGGCGGCCGCCCAGGGCGATGGCGATGCGCTGGCGCTGCTGGCGCAGCTCAAAATCCGTAACCCC
CAACAGGCGGACTATCCGCAGGCCCGCCAGCTGGCGGAAAAAGCCGTCGAGGCCGGCAGTAAATCCGGAGAGATCGTCCT
CGCGCGGGTGCTGGTCAACCGTCAGGCTGGCGCCACCGACGTAGCGCACGCCATCACGCTGCTGCAGGATGCTGCCCGGG
ATAGCGAAAGCGATGCGGCGGTAGATGCCCAGATGCTGCTGGGGCTGATCTACGCCAGCGGCGTACACGGCCCGGAGGAT
GATGTGAAAGCAAGTGAATACTTTAAAGGCAGTTCATCACTTTCCCGCACCGGCTATGCCGAATACTGGGCCGGGATGAT
GTTCCAGCAGGGAGAGAAAGGCTTTATCGAACCGAATAAGCAGAAGGCGCTGCACTGGCTCAACGTCAGTTGCCTGGAGG
GGTTTGATACCGGCTGCGAAGAGTTTGACCGGATTAGTAAAGGATAA

Upstream 100 bases:

>100_bases
AGGTAACGCAAATCGGCCCTACCTACCGATACCCGCCATTTTCTTCTTTTTCGCCTCCCTTTATACTGCGCGCTATGTTC
CTTACTGATAATAAATACAA

Downstream 100 bases:

>100_bases
GAAAAAGCCCGGCGCTATCGCGCCGGGCTTTGTGTTTTATTGGGCGGTTTTATCAAACTTGCCCAGCACTTCGCGTTCAT
ACGCCAGCGCTTTTTTGCGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 228; Mature: 228

Protein sequence:

>228_residues
MKYLFLFLLVFTSGAAVATEPGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIRNP
QQADYPQARQLAEKAVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPED
DVKASEYFKGSSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFDTGCEEFDRISKG

Sequences:

>Translated_228_residues
MKYLFLFLLVFTSGAAVATEPGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIRNP
QQADYPQARQLAEKAVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPED
DVKASEYFKGSSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFDTGCEEFDRISKG
>Mature_228_residues
MKYLFLFLLVFTSGAAVATEPGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIRNP
QQADYPQARQLAEKAVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPED
DVKASEYFKGSSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFDTGCEEFDRISKG

Specific function: Unknown

COG id: COG0790

COG function: function code R; FOG: TPR repeat, SEL1 subfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1790515, Length=225, Percent_Identity=67.5555555555556, Blast_Score=311, Evalue=3e-86,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006597
- InterPro:   IPR011990 [H]

Pfam domain/function: PF08238 Sel1 [H]

EC number: NA

Molecular weight: Translated: 24836; Mature: 24836

Theoretical pI: Translated: 4.61; Mature: 4.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYLFLFLLVFTSGAAVATEPGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKA
CHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHEEEEHHHCCCCCCHHHHHHHHHH
AAQGDGDALALLAQLKIRNPQQADYPQARQLAEKAVEAGSKSGEIVLARVLVNRQAGATD
HCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEHHHHHHHCCCCHHH
VAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRTGYA
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCHHHCCHHHHHCCCCCCCCCCHH
EYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFDTGCEEFDRISKG
HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHCCC
>Mature Secondary Structure
MKYLFLFLLVFTSGAAVATEPGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKA
CHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHEEEEHHHCCCCCCHHHHHHHHHH
AAQGDGDALALLAQLKIRNPQQADYPQARQLAEKAVEAGSKSGEIVLARVLVNRQAGATD
HCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEHHHHHHHCCCCHHH
VAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRTGYA
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCHHHCCHHHHHCCCCCCCCCCHH
EYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFDTGCEEFDRISKG
HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]