Click here to switch to the map view.

The map label for this gene is yjcB [H]

Identifier: 238892549

GI number: 238892549

Start: 333884

End: 334165

Strand: Reverse

Name: yjcB [H]

Synonym: KP1_0322

Alternate gene names: 238892549

Gene position: 334165-333884 (Counterclockwise)

Preceding gene: 238892552

Following gene: 238892544

Centisome position: 6.37

GC content: 53.9

Gene sequence:

>282_bases
ATGGCTTCCATTACTACCAGTGTCGTATTATTGCGCTGGCCCCTGGTGAGCGCGGTACTGATGTTTCTCGCCAGCTCACT
GAATATTCAGCTTCGCAAAAGCGATTACGCCGGTCTGGCGGTGATCTGCAGCTGCCTCGGCCTGGCCGCCGCCTGCTGGT
TCGCCACCGGTTTGCTCGGTATCACCCTGCTTGATATGGCCAAAATCTGGGGCAATATCAAAGATGTGATGATTGAAGTC
ATGAGTCAGACACCGCCAGAATGGCCAATGATGATGACCTGA

Upstream 100 bases:

>100_bases
TTTCATCACTCTCTAGTACGCCAGTTGAGACCAGAGCGCTATGCCATCGTCAGTCGCGTCAGGTCGTCCATGGCTCCCGA
CTTTCTTTGAGGATAGGTTA

Downstream 100 bases:

>100_bases
GGTTAAAAAGCTTCCCGACGGGAAGCTTTTTCGTTTTCTGCAGCCCTTATTTCCCTAATTTCGCCATCATCTCCGGACGC
ATAAATTTATGGATCACCAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 93; Mature: 92

Protein sequence:

>93_residues
MASITTSVVLLRWPLVSAVLMFLASSLNIQLRKSDYAGLAVICSCLGLAAACWFATGLLGITLLDMAKIWGNIKDVMIEV
MSQTPPEWPMMMT

Sequences:

>Translated_93_residues
MASITTSVVLLRWPLVSAVLMFLASSLNIQLRKSDYAGLAVICSCLGLAAACWFATGLLGITLLDMAKIWGNIKDVMIEV
MSQTPPEWPMMMT
>Mature_92_residues
ASITTSVVLLRWPLVSAVLMFLASSLNIQLRKSDYAGLAVICSCLGLAAACWFATGLLGITLLDMAKIWGNIKDVMIEVM
SQTPPEWPMMMT

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87082365, Length=93, Percent_Identity=67.741935483871, Blast_Score=135, Evalue=5e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016958
- ProDom:   PD064934 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 10122; Mature: 9991

Theoretical pI: Translated: 6.32; Mature: 6.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.2 %Cys     (Translated Protein)
8.6 %Met     (Translated Protein)
11.8 %Cys+Met (Translated Protein)
3.3 %Cys     (Mature Protein)
7.6 %Met     (Mature Protein)
10.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASITTSVVLLRWPLVSAVLMFLASSLNIQLRKSDYAGLAVICSCLGLAAACWFATGLLG
CCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHH
ITLLDMAKIWGNIKDVMIEVMSQTPPEWPMMMT
HHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
ASITTSVVLLRWPLVSAVLMFLASSLNIQLRKSDYAGLAVICSCLGLAAACWFATGLLG
CCHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHH
ITLLDMAKIWGNIKDVMIEVMSQTPPEWPMMMT
HHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8265357; 9278503 [H]