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The map label for this gene is yjgF [H]

Identifier: 238892500

GI number: 238892500

Start: 284199

End: 284579

Strand: Reverse

Name: yjgF [H]

Synonym: KP1_0268

Alternate gene names: 238892500

Gene position: 284579-284199 (Counterclockwise)

Preceding gene: 238892501

Following gene: 238892499

Centisome position: 5.42

GC content: 59.32

Gene sequence:

>381_bases
ATGATTATTACCACCGCTGACGCGCCTGCCGCTATCGGCCCGTACGTGCAGGGCGTCAATCTCGGCGCGATGACCATCAC
CTCCGGTCAGCTGCCGATTAATCCGCTGGACGGCACCATGCCAGGCGATATCGCCGAACAGGCGCGGCAATCACTGGAGA
ACGTGAAAGCCATCGTCGAAGCCGCCGGACTCACGGTCGGGCAGATCGTTAAAACTACGGTGTTTGTCAAAGACCTGGCG
GATTTTGCCGCCATCAATGCCGCCTACGAGGCCTTCTTTATCGAACACCAGGCGGCCTTTCCGGCGCGCTCCTGTGTGGA
GGTAGCAAGGTTACCGAAAGATGCCGGCGTCGAAATCGAAGCGATCGCTTTCGCCCGCTAA

Upstream 100 bases:

>100_bases
TCGCCAGCTTCCGTTTAGGCCTGGTGTGGGTGGTAGTGAGCGGCGTCGGCTCGCTGGTGTTGTTAAATTATTTTATGTAA
CCGTTTGAAGGATAAACCGT

Downstream 100 bases:

>100_bases
CCCCCAGGCTGGAGGGAGCGCCTCCAGCCTTCTCCCACCGATTTTTGTCGTTCCACATTGTTCACTTTACAGGCAATATA
GCCGCAGAACGACGCGAGGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 126; Mature: 126

Protein sequence:

>126_residues
MIITTADAPAAIGPYVQGVNLGAMTITSGQLPINPLDGTMPGDIAEQARQSLENVKAIVEAAGLTVGQIVKTTVFVKDLA
DFAAINAAYEAFFIEHQAAFPARSCVEVARLPKDAGVEIEAIAFAR

Sequences:

>Translated_126_residues
MIITTADAPAAIGPYVQGVNLGAMTITSGQLPINPLDGTMPGDIAEQARQSLENVKAIVEAAGLTVGQIVKTTVFVKDLA
DFAAINAAYEAFFIEHQAAFPARSCVEVARLPKDAGVEIEAIAFAR
>Mature_126_residues
MIITTADAPAAIGPYVQGVNLGAMTITSGQLPINPLDGTMPGDIAEQARQSLENVKAIVEAAGLTVGQIVKTTVFVKDLA
DFAAINAAYEAFFIEHQAAFPARSCVEVARLPKDAGVEIEAIAFAR

Specific function: May have a phosphotransferase activity [H]

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Homo sapiens, GI5032215, Length=123, Percent_Identity=43.0894308943089, Blast_Score=102, Evalue=1e-22,
Organism=Escherichia coli, GI87082396, Length=124, Percent_Identity=75.8064516129032, Blast_Score=194, Evalue=1e-51,
Organism=Escherichia coli, GI87082213, Length=122, Percent_Identity=66.3934426229508, Blast_Score=169, Evalue=3e-44,
Organism=Escherichia coli, GI1787245, Length=123, Percent_Identity=30.8943089430894, Blast_Score=64, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI25148896, Length=124, Percent_Identity=45.1612903225806, Blast_Score=110, Evalue=2e-25,
Organism=Caenorhabditis elegans, GI71982075, Length=124, Percent_Identity=45.1612903225806, Blast_Score=110, Evalue=3e-25,
Organism=Caenorhabditis elegans, GI71982068, Length=124, Percent_Identity=45.1612903225806, Blast_Score=109, Evalue=3e-25,
Organism=Saccharomyces cerevisiae, GI6322138, Length=124, Percent_Identity=37.0967741935484, Blast_Score=89, Evalue=3e-19,
Organism=Saccharomyces cerevisiae, GI6320899, Length=106, Percent_Identity=37.7358490566038, Blast_Score=85, Evalue=4e-18,
Organism=Drosophila melanogaster, GI19921376, Length=126, Percent_Identity=44.4444444444444, Blast_Score=97, Evalue=2e-21,

Paralogues:

None

Copy number: 1320 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 13157; Mature: 13157

Theoretical pI: Translated: 4.30; Mature: 4.30

Prosite motif: PS01094 UPF0076

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIITTADAPAAIGPYVQGVNLGAMTITSGQLPINPLDGTMPGDIAEQARQSLENVKAIVE
CEEECCCCCCCCCCHHCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
AAGLTVGQIVKTTVFVKDLADFAAINAAYEAFFIEHQAAFPARSCVEVARLPKDAGVEIE
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCEEE
AIAFAR
EEEECC
>Mature Secondary Structure
MIITTADAPAAIGPYVQGVNLGAMTITSGQLPINPLDGTMPGDIAEQARQSLENVKAIVE
CEEECCCCCCCCCCHHCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
AAGLTVGQIVKTTVFVKDLADFAAINAAYEAFFIEHQAAFPARSCVEVARLPKDAGVEIE
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCEEE
AIAFAR
EEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]