Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
---|---|
Accession | NC_012724 |
Length | 3,906,507 |
Click here to switch to the map view.
The map label for this gene is 238028364
Identifier: 238028364
GI number: 238028364
Start: 3205546
End: 3206259
Strand: Direct
Name: 238028364
Synonym: bglu_1g28250
Alternate gene names: NA
Gene position: 3205546-3206259 (Clockwise)
Preceding gene: 238028363
Following gene: 238028366
Centisome position: 82.06
GC content: 72.13
Gene sequence:
>714_bases ATGAAAAAATCCGCTGCCGCACTCGCGCTCGCCATCTCCACCCTCGCCCTCGGTGCGGCCCCGGCCGCCCGCGCGCAGGT CACGCCGCCGCCCGCCGGCGTGCTGTCGCTGTCGGCCCAGGCCAGCACCGACGTGCCGCAGGACGTCGTCGACATCACGC TGTTCTACGAGCAGGAGGCGAAGGACCCGGGCAGCCTGACGGCCGAGCTGAACCGCCGCGCCGATGCGGCGCTCGCGCGT GCGCGCGGCGTGTCGGGCGTGAGCGCCCACACGGGCGGCTTCTCGGTGTACCCGAGCACCGACCGCGACGGCAAAATCTC GGCCTGGCGCGGCCGCACCGAGATCGTGCTCGAATCGCGCGACTTCGCGGCCGCCTCGAAGCTGGCCGGCGACCTGTCGA ACTCGCTGCAGGTCGGCAACGTCGCGTTCTCGCTGTCGCCCGAGGCGCAGCGTGCGGCCGAGCAGAAGCTGACCTCGCAG GCGATCGAGTCGTTCCGCGACCGCGCGGCCGAGGCCGCCAAGGCGTTCGGCTACAGCGGCTTCGCGATCCGCGAGGTGAA CGTGGGCGGCGGCCGCAGCGTGCAGCCGTATTCGCGCATGATGGCGATGGACGCGGCGCCGATGATGGCCGCCAAGGCCG CCGCGCCGATCGCGGTCGAGGGCGGCAAGGCCACCGTCACCGTCACCGTCAACGGTTCGGTGCAGATGAAGTAA
Upstream 100 bases:
>100_bases GCGCAAACGGCGCAGACGCAGGTTCGCGCCCGTTTGCCTCGACACGACGCACGGCACCGCGAACGCTCGCGGCTACCGCG CACCAACCGGAGCTCACACG
Downstream 100 bases:
>100_bases GCGGGCCGCCGGCAGGCGGGACCGCCGCGCCGTCGCGCCCGGCTTCACGAACGCGGCGCGCCGGCACCGACAGCCCGGCG GGCCTGCCCCGCCGGGCTGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 237; Mature: 237
Protein sequence:
>237_residues MKKSAAALALAISTLALGAAPAARAQVTPPPAGVLSLSAQASTDVPQDVVDITLFYEQEAKDPGSLTAELNRRADAALAR ARGVSGVSAHTGGFSVYPSTDRDGKISAWRGRTEIVLESRDFAAASKLAGDLSNSLQVGNVAFSLSPEAQRAAEQKLTSQ AIESFRDRAAEAAKAFGYSGFAIREVNVGGGRSVQPYSRMMAMDAAPMMAAKAAAPIAVEGGKATVTVTVNGSVQMK
Sequences:
>Translated_237_residues MKKSAAALALAISTLALGAAPAARAQVTPPPAGVLSLSAQASTDVPQDVVDITLFYEQEAKDPGSLTAELNRRADAALAR ARGVSGVSAHTGGFSVYPSTDRDGKISAWRGRTEIVLESRDFAAASKLAGDLSNSLQVGNVAFSLSPEAQRAAEQKLTSQ AIESFRDRAAEAAKAFGYSGFAIREVNVGGGRSVQPYSRMMAMDAAPMMAAKAAAPIAVEGGKATVTVTVNGSVQMK >Mature_237_residues MKKSAAALALAISTLALGAAPAARAQVTPPPAGVLSLSAQASTDVPQDVVDITLFYEQEAKDPGSLTAELNRRADAALAR ARGVSGVSAHTGGFSVYPSTDRDGKISAWRGRTEIVLESRDFAAASKLAGDLSNSLQVGNVAFSLSPEAQRAAEQKLTSQ AIESFRDRAAEAAKAFGYSGFAIREVNVGGGRSVQPYSRMMAMDAAPMMAAKAAAPIAVEGGKATVTVTVNGSVQMK
Specific function: Unknown
COG id: COG3471
COG function: function code S; Predicted periplasmic/secreted protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24372; Mature: 24372
Theoretical pI: Translated: 9.75; Mature: 9.75
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKSAAALALAISTLALGAAPAARAQVTPPPAGVLSLSAQASTDVPQDVVDITLFYEQEA CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHEEEEEEEECCC KDPGSLTAELNRRADAALARARGVSGVSAHTGGFSVYPSTDRDGKISAWRGRTEIVLESR CCCCCCHHHHHHHHHHHHHHHCCCCCCEECCCCEEECCCCCCCCCEEEECCCEEEEEECC DFAAASKLAGDLSNSLQVGNVAFSLSPEAQRAAEQKLTSQAIESFRDRAAEAAKAFGYSG CHHHHHHHHHHHCCCEEECEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC FAIREVNVGGGRSVQPYSRMMAMDAAPMMAAKAAAPIAVEGGKATVTVTVNGSVQMK EEEEEEECCCCCCCCHHHHHHHHCCCHHHHHHCCCCEEEECCCEEEEEEECCEEEEC >Mature Secondary Structure MKKSAAALALAISTLALGAAPAARAQVTPPPAGVLSLSAQASTDVPQDVVDITLFYEQEA CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHEEEEEEEECCC KDPGSLTAELNRRADAALARARGVSGVSAHTGGFSVYPSTDRDGKISAWRGRTEIVLESR CCCCCCHHHHHHHHHHHHHHHCCCCCCEECCCCEEECCCCCCCCCEEEECCCEEEEEECC DFAAASKLAGDLSNSLQVGNVAFSLSPEAQRAAEQKLTSQAIESFRDRAAEAAKAFGYSG CHHHHHHHHHHHCCCEEECEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC FAIREVNVGGGRSVQPYSRMMAMDAAPMMAAKAAAPIAVEGGKATVTVTVNGSVQMK EEEEEEECCCCCCCCHHHHHHHHCCCHHHHHHCCCCEEEECCCEEEEEEECCEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA