Click here to switch to the map view.

The map label for this gene is ytfM [C]

Identifier: 238028344

GI number: 238028344

Start: 3185132

End: 3186973

Strand: Reverse

Name: ytfM [C]

Synonym: bglu_1g28050

Alternate gene names: 238028344

Gene position: 3186973-3185132 (Counterclockwise)

Preceding gene: 238028349

Following gene: 238028343

Centisome position: 81.58

GC content: 70.03

Gene sequence:

>1842_bases
TTGACAGGGCAGGCCATTTCACCAGACGAGCGTCGCGCCCGCCGCGCGGCCACGCACGCTCGCACGGCGGCGCGGCCGCC
GCGCCTGTTCCCATGGCTTGCATCGCTGCGGCCGCGCCTCGCGGGCATCCTGCTCGGCTGCCTCGCGGCCGGCTTCGCGC
TGCCGGCCCAGGCCAAATACGAGGTCGACATCGACGCGCCGCGCTCGGTGCGCAGCCTGCTCAAGCAGCATCTCGACCTG
TCGCGCTTCGCCAAGCGCGACGACATCTCCGACGACCAGTTCGAGTTCCTGGTCACCGCGACGCCGCAGCAGGTGCGCGA
CCTGACCGCCACCGCCGGCTATTTCTCGCCGGTGGTCTCGACCGACGTGCGCAATCACGACGGCAAGCGCGCGGTGACGG
TCAAGGTCGATCCCGGGCCGCAGACGGCCGTGGCCGGCGTCGACCTGAGGTTCCGCGGCCCGGTCGGCACCGAGGACCCC
GAGCAGGAGACGGCCACGCGGCTCGCGTTCTCGCTGCACGAAGGCGACGCGTTCACGCAGTCGGGCTGGGACGACGCCAA
GAACGGCGCGCTCAGGCAGCTGCAGTCGCGCCGCTATCTGGGCGCGAAGATCGTCGCCTCGCAGGCGCGCATCGATCCGC
GCACGCGCACCGCGAAGCTGTCGGTCACCTTCGACAGCGGGCCGACGTTTACGCTCGGCGCGCTCGACGTGAGCGGCCAG
CGCCGCTATCCCGAGCGCATCATCCGCAACGTCAACCCGCTCGGGGTGGGCGAGATCTACGACGTGCAGCGCATCAACGA
ACTGCAGCGGCAGGTGCAGAACACGCCGTACTACGCGAGCGTCGCGATCGACGTCGGCGACGACACCGCGAAGCCCCACG
ACACGCCGGTCCACGTCAAGGTCAGCGAATACCCGTTCAACAGCGTGCGCGGCGGGGTGGGCTATGCCACCGACACCGGG
CCGCACGTGCAGGGTTCGTACACGTATCTGGACACGTTCGGGGCGGCCTGGCCGCTGCAGGTGTCGGGCCGCATCGACCA
GATCCAGCAGTACGGCCAGGTGCAGCTGTCGATGCCGCCCGGCCCGCGCGCCTGGACCAACAGCGTGCTGGCCTCGTACA
CCAACACCAACGTGTCGGGCACGCGCATCTACAGCGCACGGGTGGGCGCGCAGCGCGCGAAGACGAGCCAGAACATCGAC
TACAGCTACTCGATCATGTTCTACGAGGACCGGCTCGACCAGAACGGCGCCGGCCCGACCACCAGCCGCGCACTGGTGCC
GCAGTGGTCGTGGACGCGCCGCAACGTCGACGATCCGCTGTTCCCGCGCTCGGGCAACCTGATCCACGCCGAGGCCGGCT
TCGCGATCAAGGGCGCGCTGACCGACCAGACCTTCGTGCGCGGCTACGCGCGCGGCCAGCAGTACATTCCGGTCGGCAAG
CGTGACCTGGTGCTGTTCCGTGCCGAAGTGGGCGGCGTGTTTACGAGCGGCGGCTCGGCCGGCATCCCGGCCTCGCTGCT
GTTCCGCGCGGGCGGCTCGAACTCGGTGCGCGGCTACGGCTACCAGAGCATCGGCAACACCGTGGACGGCTCGGTGCTGC
CGACCAAGTACCTGATGACGGGCACCGCCGAATACCAGCACTGGTTCAACCATGACTGGGGCGCGGCGACCTTCTTCGAC
GTCGGCACCGCCACCGATGCCTGGGGCGAGCGCGTGTTCTATCCCGGCGTCGGCGTGGGCGCGCGCTGGCGCAGCCCGGT
CGGGCCGGTCAACGTCGACCTCGCCTACGGGCTGCGCAACCACAGCGTGCGGCCGTACCTGACGCTCGGCATCGCATTCT
GA

Upstream 100 bases:

>100_bases
CGCGGATTTGAAGATCTTTCAAGGTTTCGCCGCGGCTACCGGGTGCCGGTGTGGTCAAATGGCGTCTTTTGTTCCGACTA
TTTTCCGAAGGGGGCGGTAT

Downstream 100 bases:

>100_bases
CGATGGTTTTCCGGATTCCAGCATGACGAAGGACGATTCCGTGCCGCCCGGCGGCACCCCGAACCCGGGCGGCCCGCCGC
CCGATCACGAGGCGCCGCCG

Product: OMP85 family outer membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 613; Mature: 612

Protein sequence:

>613_residues
MTGQAISPDERRARRAATHARTAARPPRLFPWLASLRPRLAGILLGCLAAGFALPAQAKYEVDIDAPRSVRSLLKQHLDL
SRFAKRDDISDDQFEFLVTATPQQVRDLTATAGYFSPVVSTDVRNHDGKRAVTVKVDPGPQTAVAGVDLRFRGPVGTEDP
EQETATRLAFSLHEGDAFTQSGWDDAKNGALRQLQSRRYLGAKIVASQARIDPRTRTAKLSVTFDSGPTFTLGALDVSGQ
RRYPERIIRNVNPLGVGEIYDVQRINELQRQVQNTPYYASVAIDVGDDTAKPHDTPVHVKVSEYPFNSVRGGVGYATDTG
PHVQGSYTYLDTFGAAWPLQVSGRIDQIQQYGQVQLSMPPGPRAWTNSVLASYTNTNVSGTRIYSARVGAQRAKTSQNID
YSYSIMFYEDRLDQNGAGPTTSRALVPQWSWTRRNVDDPLFPRSGNLIHAEAGFAIKGALTDQTFVRGYARGQQYIPVGK
RDLVLFRAEVGGVFTSGGSAGIPASLLFRAGGSNSVRGYGYQSIGNTVDGSVLPTKYLMTGTAEYQHWFNHDWGAATFFD
VGTATDAWGERVFYPGVGVGARWRSPVGPVNVDLAYGLRNHSVRPYLTLGIAF

Sequences:

>Translated_613_residues
MTGQAISPDERRARRAATHARTAARPPRLFPWLASLRPRLAGILLGCLAAGFALPAQAKYEVDIDAPRSVRSLLKQHLDL
SRFAKRDDISDDQFEFLVTATPQQVRDLTATAGYFSPVVSTDVRNHDGKRAVTVKVDPGPQTAVAGVDLRFRGPVGTEDP
EQETATRLAFSLHEGDAFTQSGWDDAKNGALRQLQSRRYLGAKIVASQARIDPRTRTAKLSVTFDSGPTFTLGALDVSGQ
RRYPERIIRNVNPLGVGEIYDVQRINELQRQVQNTPYYASVAIDVGDDTAKPHDTPVHVKVSEYPFNSVRGGVGYATDTG
PHVQGSYTYLDTFGAAWPLQVSGRIDQIQQYGQVQLSMPPGPRAWTNSVLASYTNTNVSGTRIYSARVGAQRAKTSQNID
YSYSIMFYEDRLDQNGAGPTTSRALVPQWSWTRRNVDDPLFPRSGNLIHAEAGFAIKGALTDQTFVRGYARGQQYIPVGK
RDLVLFRAEVGGVFTSGGSAGIPASLLFRAGGSNSVRGYGYQSIGNTVDGSVLPTKYLMTGTAEYQHWFNHDWGAATFFD
VGTATDAWGERVFYPGVGVGARWRSPVGPVNVDLAYGLRNHSVRPYLTLGIAF
>Mature_612_residues
TGQAISPDERRARRAATHARTAARPPRLFPWLASLRPRLAGILLGCLAAGFALPAQAKYEVDIDAPRSVRSLLKQHLDLS
RFAKRDDISDDQFEFLVTATPQQVRDLTATAGYFSPVVSTDVRNHDGKRAVTVKVDPGPQTAVAGVDLRFRGPVGTEDPE
QETATRLAFSLHEGDAFTQSGWDDAKNGALRQLQSRRYLGAKIVASQARIDPRTRTAKLSVTFDSGPTFTLGALDVSGQR
RYPERIIRNVNPLGVGEIYDVQRINELQRQVQNTPYYASVAIDVGDDTAKPHDTPVHVKVSEYPFNSVRGGVGYATDTGP
HVQGSYTYLDTFGAAWPLQVSGRIDQIQQYGQVQLSMPPGPRAWTNSVLASYTNTNVSGTRIYSARVGAQRAKTSQNIDY
SYSIMFYEDRLDQNGAGPTTSRALVPQWSWTRRNVDDPLFPRSGNLIHAEAGFAIKGALTDQTFVRGYARGQQYIPVGKR
DLVLFRAEVGGVFTSGGSAGIPASLLFRAGGSNSVRGYGYQSIGNTVDGSVLPTKYLMTGTAEYQHWFNHDWGAATFFDV
GTATDAWGERVFYPGVGVGARWRSPVGPVNVDLAYGLRNHSVRPYLTLGIAF

Specific function: Unknown

COG id: COG0729

COG function: function code M; Outer membrane protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ytfM [H]

Homologues:

Organism=Escherichia coli, GI1790666, Length=585, Percent_Identity=25.1282051282051, Blast_Score=135, Evalue=6e-33,
Organism=Escherichia coli, GI1786374, Length=428, Percent_Identity=22.6635514018692, Blast_Score=66, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000184 [H]

Pfam domain/function: PF01103 Bac_surface_Ag [H]

EC number: NA

Molecular weight: Translated: 67058; Mature: 66927

Theoretical pI: Translated: 9.74; Mature: 9.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGQAISPDERRARRAATHARTAARPPRLFPWLASLRPRLAGILLGCLAAGFALPAQAKY
CCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEE
EVDIDAPRSVRSLLKQHLDLSRFAKRDDISDDQFEFLVTATPQQVRDLTATAGYFSPVVS
EEECCCCHHHHHHHHHHCCHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHCCHHHHHHH
TDVRNHDGKRAVTVKVDPGPQTAVAGVDLRFRGPVGTEDPEQETATRLAFSLHEGDAFTQ
CCCCCCCCCEEEEEEECCCCCCEEEEEEEEECCCCCCCCCHHHHHHHHEEEEECCCCCCC
SGWDDAKNGALRQLQSRRYLGAKIVASQARIDPRTRTAKLSVTFDSGPTFTLGALDVSGQ
CCCCHHCCHHHHHHHHHHCCCHHEEEHHHCCCCCCEEEEEEEEECCCCCEEEEEEECCCC
RRYPERIIRNVNPLGVGEIYDVQRINELQRQVQNTPYYASVAIDVGDDTAKPHDTPVHVK
CCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCEEEEE
VSEYPFNSVRGGVGYATDTGPHVQGSYTYLDTFGAAWPLQVSGRIDQIQQYGQVQLSMPP
EECCCCHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEECCCHHHHHHCCCEEEECCC
GPRAWTNSVLASYTNTNVSGTRIYSARVGAQRAKTSQNIDYSYSIMFYEDRLDQNGAGPT
CCCHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHCCCCCCEEEEEEEEECCCCCCCCCCC
TSRALVPQWSWTRRNVDDPLFPRSGNLIHAEAGFAIKGALTDQTFVRGYARGQQYIPVGK
CCCEECCCCCCCCCCCCCCCCCCCCCEEEECCCEEEEECCCCHHHHHHHHCCCEECCCCC
RDLVLFRAEVGGVFTSGGSAGIPASLLFRAGGSNSVRGYGYQSIGNTVDGSVLPTKYLMT
CEEEEEEEECCEEEECCCCCCCCCEEEEECCCCCCCCCCCHHHCCCCCCCCCCCCHHEEE
GTAEYQHWFNHDWGAATFFDVGTATDAWGERVFYPGVGVGARWRSPVGPVNVDLAYGLRN
CCHHHHHHHCCCCCCEEEEECCCCCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEECCCC
HSVRPYLTLGIAF
CCCCCEEEEEEEC
>Mature Secondary Structure 
TGQAISPDERRARRAATHARTAARPPRLFPWLASLRPRLAGILLGCLAAGFALPAQAKY
CCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEE
EVDIDAPRSVRSLLKQHLDLSRFAKRDDISDDQFEFLVTATPQQVRDLTATAGYFSPVVS
EEECCCCHHHHHHHHHHCCHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHCCHHHHHHH
TDVRNHDGKRAVTVKVDPGPQTAVAGVDLRFRGPVGTEDPEQETATRLAFSLHEGDAFTQ
CCCCCCCCCEEEEEEECCCCCCEEEEEEEEECCCCCCCCCHHHHHHHHEEEEECCCCCCC
SGWDDAKNGALRQLQSRRYLGAKIVASQARIDPRTRTAKLSVTFDSGPTFTLGALDVSGQ
CCCCHHCCHHHHHHHHHHCCCHHEEEHHHCCCCCCEEEEEEEEECCCCCEEEEEEECCCC
RRYPERIIRNVNPLGVGEIYDVQRINELQRQVQNTPYYASVAIDVGDDTAKPHDTPVHVK
CCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCEEEEE
VSEYPFNSVRGGVGYATDTGPHVQGSYTYLDTFGAAWPLQVSGRIDQIQQYGQVQLSMPP
EECCCCHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEECCCHHHHHHCCCEEEECCC
GPRAWTNSVLASYTNTNVSGTRIYSARVGAQRAKTSQNIDYSYSIMFYEDRLDQNGAGPT
CCCHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHCCCCCCEEEEEEEEECCCCCCCCCCC
TSRALVPQWSWTRRNVDDPLFPRSGNLIHAEAGFAIKGALTDQTFVRGYARGQQYIPVGK
CCCEECCCCCCCCCCCCCCCCCCCCCEEEECCCEEEEECCCCHHHHHHHHCCCEECCCCC
RDLVLFRAEVGGVFTSGGSAGIPASLLFRAGGSNSVRGYGYQSIGNTVDGSVLPTKYLMT
CEEEEEEEECCEEEECCCCCCCCCEEEEECCCCCCCCCCCHHHCCCCCCCCCCCCHHEEE
GTAEYQHWFNHDWGAATFFDVGTATDAWGERVFYPGVGVGARWRSPVGPVNVDLAYGLRN
CCHHHHHHHCCCCCCEEEEECCCCCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEECCCC
HSVRPYLTLGIAF
CCCCCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800; 10675023 [H]