Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
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Accession | NC_012724 |
Length | 3,906,507 |
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The map label for this gene is ylbG [H]
Identifier: 238028320
GI number: 238028320
Start: 3149707
End: 3150753
Strand: Direct
Name: ylbG [H]
Synonym: bglu_1g27810
Alternate gene names: 238028320
Gene position: 3149707-3150753 (Clockwise)
Preceding gene: 238028319
Following gene: 238028321
Centisome position: 80.63
GC content: 58.17
Gene sequence:
>1047_bases GTGAGTAGTCTCAACCAAAATGTCATCCGCCACAAGATCGGTCTGCTGAATCTGGCCACCGAGCTCGGGAACGTGTCGAA GGCCTGCAAGGTGATGGGGCTGTCGCGCGATACGTTCTACCGCTATCAGAATGCCGTGGCCGAGGGCGGCGTCGATGCCC TGTTCGACAGCAATCGGCGCAAGCCGAATCCCAAGAATCGAGTCGATGAAGCGACGGAAATCGCCGTGCTGGCCTATGCC ATCGAGCAGCCCGCCCACGGGCAGGTTCGGGTCAGCAACGAATTACGCCGGCGCGGTATTTTCGTGTCTGCATCCGGCGT TCGTTCGATCTGGCTGCGTCACGAATTGTCGTCCTTCAAGCTGAGGCTCGTGGCGCTGGAGAAGCAGGTCGCTGAAAAAG GCATCGTGCTGAGCGAGGACCAGGTGGCCGCGCTGGAAAGAAAGCAGGACGACGATGTGGCTCATGGCGAAATCGAAACC GCTCATCCCGGCTATCTGGGCTCGCAGGACACGTTCTACGTGGGCACGATCAAGGGCGTAGGCCGGATTTACCAGCAGAC CTTCGTCGACACCTACAGCAAAGTGGCGATGGCCAAGCTGTACACGACCAAGACACCGATCACGGCGGCCGATCTGCTCA ATGACCGGGTGTTGCCGTTCTTCGAGGAGCACGGCATGGGTGTGATCCGCATGCTGACCGATCGAGGCACGGAGTATTGC GGCAAGCCGGAATCGCACGATTATCAGCTGTACCTGGCGCTGAACGACATCGAGCACACCAAAACCAAGGCGCGACATCC GCAGACCAATGGCATCTGCGAGCGGTTCCATAAAACCATCCTGCAGGAGTTTTATCAGGTCGCGTTCCGCCACAAGCTCT ATCTGACGCTGGCGGAACTGCAGGTCGATCTCGATACTTGGCTGATGTACTACAACGGCGAGCGAACGCATCAAGGTAAG ATGTGTTGTGGTCGCACGCCTTTGCAAACGCTCATCGCGGGCAAGGAGGTGTGGAAGGAGAAAGTGAGCCACCTGAATCT GATCTGA
Upstream 100 bases:
>100_bases TTGATCTGACAGTAAGGCCTTGCCAAGAGGCGGGGTTACCCGTTTTGATAGAGGTGCGAATCTTCATCAAAACAGCGCGC AAGCGCCAAGGAGTAACCCC
Downstream 100 bases:
>100_bases CAGTCACGCACCGTCGGAACGGGTAACTGTCAGATCGGGTCGCGACTTCTACAAGTAAGGCTGCCGGCCCGGCGCCGCCG CGCCGGGGCACCTGCCTTAT
Product: integrase catalytic subunit
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 348; Mature: 347
Protein sequence:
>348_residues MSSLNQNVIRHKIGLLNLATELGNVSKACKVMGLSRDTFYRYQNAVAEGGVDALFDSNRRKPNPKNRVDEATEIAVLAYA IEQPAHGQVRVSNELRRRGIFVSASGVRSIWLRHELSSFKLRLVALEKQVAEKGIVLSEDQVAALERKQDDDVAHGEIET AHPGYLGSQDTFYVGTIKGVGRIYQQTFVDTYSKVAMAKLYTTKTPITAADLLNDRVLPFFEEHGMGVIRMLTDRGTEYC GKPESHDYQLYLALNDIEHTKTKARHPQTNGICERFHKTILQEFYQVAFRHKLYLTLAELQVDLDTWLMYYNGERTHQGK MCCGRTPLQTLIAGKEVWKEKVSHLNLI
Sequences:
>Translated_348_residues MSSLNQNVIRHKIGLLNLATELGNVSKACKVMGLSRDTFYRYQNAVAEGGVDALFDSNRRKPNPKNRVDEATEIAVLAYA IEQPAHGQVRVSNELRRRGIFVSASGVRSIWLRHELSSFKLRLVALEKQVAEKGIVLSEDQVAALERKQDDDVAHGEIET AHPGYLGSQDTFYVGTIKGVGRIYQQTFVDTYSKVAMAKLYTTKTPITAADLLNDRVLPFFEEHGMGVIRMLTDRGTEYC GKPESHDYQLYLALNDIEHTKTKARHPQTNGICERFHKTILQEFYQVAFRHKLYLTLAELQVDLDTWLMYYNGERTHQGK MCCGRTPLQTLIAGKEVWKEKVSHLNLI >Mature_347_residues SSLNQNVIRHKIGLLNLATELGNVSKACKVMGLSRDTFYRYQNAVAEGGVDALFDSNRRKPNPKNRVDEATEIAVLAYAI EQPAHGQVRVSNELRRRGIFVSASGVRSIWLRHELSSFKLRLVALEKQVAEKGIVLSEDQVAALERKQDDDVAHGEIETA HPGYLGSQDTFYVGTIKGVGRIYQQTFVDTYSKVAMAKLYTTKTPITAADLLNDRVLPFFEEHGMGVIRMLTDRGTEYCG KPESHDYQLYLALNDIEHTKTKARHPQTNGICERFHKTILQEFYQVAFRHKLYLTLAELQVDLDTWLMYYNGERTHQGKM CCGRTPLQTLIAGKEVWKEKVSHLNLI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: 10-20 Molecules/Cell [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009057 [H]
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 39489; Mature: 39357
Theoretical pI: Translated: 8.64; Mature: 8.64
Prosite motif: PS50994 INTEGRASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSLNQNVIRHKIGLLNLATELGNVSKACKVMGLSRDTFYRYQNAVAEGGVDALFDSNRR CCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHCCCCC KPNPKNRVDEATEIAVLAYAIEQPAHGQVRVSNELRRRGIFVSASGVRSIWLRHELSSFK CCCCHHHHHHHHHHHHHHHHHCCCCCCCEEECHHHHHCCEEEECCCHHHHHHHHHHHHHH LRLVALEKQVAEKGIVLSEDQVAALERKQDDDVAHGEIETAHPGYLGSQDTFYVGTIKGV HHHHHHHHHHHHCCCEECCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHH GRIYQQTFVDTYSKVAMAKLYTTKTPITAADLLNDRVLPFFEEHGMGVIRMLTDRGTEYC HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCHHHHCCCEEEEEEHHCCHHHC GKPESHDYQLYLALNDIEHTKTKARHPQTNGICERFHKTILQEFYQVAFRHKLYLTLAEL CCCCCCCEEEEEEECCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEHHHH QVDLDTWLMYYNGERTHQGKMCCGRTPLQTLIAGKEVWKEKVSHLNLI EECHHHEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure SSLNQNVIRHKIGLLNLATELGNVSKACKVMGLSRDTFYRYQNAVAEGGVDALFDSNRR CCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHCCCCC KPNPKNRVDEATEIAVLAYAIEQPAHGQVRVSNELRRRGIFVSASGVRSIWLRHELSSFK CCCCHHHHHHHHHHHHHHHHHCCCCCCCEEECHHHHHCCEEEECCCHHHHHHHHHHHHHH LRLVALEKQVAEKGIVLSEDQVAALERKQDDDVAHGEIETAHPGYLGSQDTFYVGTIKGV HHHHHHHHHHHHCCCEECCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHH GRIYQQTFVDTYSKVAMAKLYTTKTPITAADLLNDRVLPFFEEHGMGVIRMLTDRGTEYC HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCHHHHCCCEEEEEEHHCCHHHC GKPESHDYQLYLALNDIEHTKTKARHPQTNGICERFHKTILQEFYQVAFRHKLYLTLAEL CCCCCCCEEEEEEECCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEHHHH QVDLDTWLMYYNGERTHQGKMCCGRTPLQTLIAGKEVWKEKVSHLNLI EECHHHEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]