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The map label for this gene is rnfB [H]

Identifier: 238028215

GI number: 238028215

Start: 3040301

End: 3041140

Strand: Direct

Name: rnfB [H]

Synonym: bglu_1g26680

Alternate gene names: 238028215

Gene position: 3040301-3041140 (Clockwise)

Preceding gene: 238028213

Following gene: 238028216

Centisome position: 77.83

GC content: 72.86

Gene sequence:

>840_bases
GTGACCGACACCAGAAAACTCGCGGATCGCATCGAAGATCTGCTGCCTCAGACGCAATGCACGAAGTGCGGCTACGACGG
CTGCCGTCCGTATGCCGAGGCGATCGCCGCCGGCACCGCCGGCTACAACCAATGCCCGCCCGGCGGCCAGCAAGGCATCG
AGCGGCTTGCCGCGCTGCTCGGCAAGCCGGTGATTCCGCTTGCCGTCGAGCACGGCGAGGAACGCCCGCGCCCGCTCGCG
GTGATCGACGAGCAGCTCTGCATCGGCTGCACGCTCTGCATGCAGGCCTGCCCGGTGGACGCGATCGTCGGCGCGCCGAA
GCAGATGCATACGGTGGTGGCCGAGCTCTGTACCGGCTGCGATCTCTGCGTGCCGCCGTGCCCGGTCGACTGCATCGCGA
TGATTCCCGTCACGGGCGAGCGCACCGGCTGGGATGCCTGGAGCCAGCAGCAGGCCGACGCCGCGCGGGCGCGCCACGAG
CGGCGCCTCGCGCGCCAGCGCCGCGAGCGCGAAGCGGCCGAGGCGCGTGCCGCGGCGCGGCGCGCGGCCAGCGCCGCGAA
CGCGGCCGGCGCTCAGGCCCCCGCAGACGATCCGGAAGCACGAAAACGCGCGATCATCGCGGCCGCGCTCGAGCGCGCGC
GCAAGAAAAAGGAAGAGCTGGCCGCGCAGGGCGATGCGCCGAAGAATACCGAGAACGTCAGCCCGGCCGTGCAGGCGCAG
ATCGACGCCGCCGAAGCGCGCCGCCGGCGCATCGAACAGGAACGGCGCGCGGCCGAGGCCGCGCGCGACGGCGAGCGTAG
CGACGGCACGCCGCCCGCCTCCGAGCCTCGCGACGAATGA

Upstream 100 bases:

>100_bases
CGAGCGCAAGGCAGGAAATCGGCGATAATTGCCGTTTGACGAACGATTCGGGCCGCGCGGAACCCCACTCGCGCGGCGCA
CGCCGCCCCACGCAGTCACC

Downstream 100 bases:

>100_bases
ACCCGAAGAAACGCCAAGCGATCTACGAAACGCTGCAGAGCCTCAACCCGCATCCGACCACGGAACTCGAATACTCGACG
CCGTTCGAGCTGCTGATCGC

Product: ferredoxin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 279; Mature: 278

Protein sequence:

>279_residues
MTDTRKLADRIEDLLPQTQCTKCGYDGCRPYAEAIAAGTAGYNQCPPGGQQGIERLAALLGKPVIPLAVEHGEERPRPLA
VIDEQLCIGCTLCMQACPVDAIVGAPKQMHTVVAELCTGCDLCVPPCPVDCIAMIPVTGERTGWDAWSQQQADAARARHE
RRLARQRREREAAEARAAARRAASAANAAGAQAPADDPEARKRAIIAAALERARKKKEELAAQGDAPKNTENVSPAVQAQ
IDAAEARRRRIEQERRAAEAARDGERSDGTPPASEPRDE

Sequences:

>Translated_279_residues
MTDTRKLADRIEDLLPQTQCTKCGYDGCRPYAEAIAAGTAGYNQCPPGGQQGIERLAALLGKPVIPLAVEHGEERPRPLA
VIDEQLCIGCTLCMQACPVDAIVGAPKQMHTVVAELCTGCDLCVPPCPVDCIAMIPVTGERTGWDAWSQQQADAARARHE
RRLARQRREREAAEARAAARRAASAANAAGAQAPADDPEARKRAIIAAALERARKKKEELAAQGDAPKNTENVSPAVQAQ
IDAAEARRRRIEQERRAAEAARDGERSDGTPPASEPRDE
>Mature_278_residues
TDTRKLADRIEDLLPQTQCTKCGYDGCRPYAEAIAAGTAGYNQCPPGGQQGIERLAALLGKPVIPLAVEHGEERPRPLAV
IDEQLCIGCTLCMQACPVDAIVGAPKQMHTVVAELCTGCDLCVPPCPVDCIAMIPVTGERTGWDAWSQQQADAARARHER
RLARQRREREAAEARAAARRAASAANAAGAQAPADDPEARKRAIIAAALERARKKKEELAAQGDAPKNTENVSPAVQAQI
DAAEARRRRIEQERRAAEAARDGERSDGTPPASEPRDE

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG2878

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfB

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787915, Length=142, Percent_Identity=53.5211267605634, Blast_Score=148, Evalue=3e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001450
- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR010207
- InterPro:   IPR016463
- InterPro:   IPR007202 [H]

Pfam domain/function: PF00037 Fer4; PF04060 FeS [H]

EC number: NA

Molecular weight: Translated: 29954; Mature: 29823

Theoretical pI: Translated: 6.29; Mature: 6.29

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
4.7 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDTRKLADRIEDLLPQTQCTKCGYDGCRPYAEAIAAGTAGYNQCPPGGQQGIERLAALL
CCCHHHHHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
GKPVIPLAVEHGEERPRPLAVIDEQLCIGCTLCMQACPVDAIVGAPKQMHTVVAELCTGC
CCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHCCHHHHHHHHHHHHCCC
DLCVPPCPVDCIAMIPVTGERTGWDAWSQQQADAARARHERRLARQRREREAAEARAAAR
CCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RAASAANAAGAQAPADDPEARKRAIIAAALERARKKKEELAAQGDAPKNTENVSPAVQAQ
HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH
IDAAEARRRRIEQERRAAEAARDGERSDGTPPASEPRDE
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TDTRKLADRIEDLLPQTQCTKCGYDGCRPYAEAIAAGTAGYNQCPPGGQQGIERLAALL
CCHHHHHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
GKPVIPLAVEHGEERPRPLAVIDEQLCIGCTLCMQACPVDAIVGAPKQMHTVVAELCTGC
CCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHCCHHHHHHHHHHHHCCC
DLCVPPCPVDCIAMIPVTGERTGWDAWSQQQADAARARHERRLARQRREREAAEARAAAR
CCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RAASAANAAGAQAPADDPEARKRAIIAAALERARKKKEELAAQGDAPKNTENVSPAVQAQ
HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH
IDAAEARRRRIEQERRAAEAARDGERSDGTPPASEPRDE
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA