| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is ybbP [H]
Identifier: 238028169
GI number: 238028169
Start: 2983782
End: 2986352
Strand: Reverse
Name: ybbP [H]
Synonym: bglu_1g26210
Alternate gene names: 238028169
Gene position: 2986352-2983782 (Counterclockwise)
Preceding gene: 238028170
Following gene: 238028168
Centisome position: 76.45
GC content: 73.75
Gene sequence:
>2571_bases TTGACGACGCAGCATGAGGGAGTTCGCGCCGCACGCGGCGCGCGTCTGGGGGCTGGTGAGCTGGCACGGCAAGCGATCCG GATGACGATGCGCGACTGGCGCGCGGGCGAGCTGACCCTGCTCGTGCTCGCGCTGGTGCTGGCGGTGGCGGCGCTGACCA GCGTGGGCTTCCTGTCCGACCGGCTGCGCCAGGGGCTCGAGCGCGACGCGCGCCAGATGCTCGGCGCCGATTTCGTGGTG CGCGGCGACCGCCCCGTCGACCCCTCGTTCGCCGCCGCCGCGCGCGCCGACGGATTGGCCACGGCGAGCACCGCGATTTT CCCGAGCATGGTCGGCGGCACCGGCGCCGGCGCGCCGTCGCGGCTCGCCGCCGTGAAGGCCGTCTCGGCCGGCTACCCGC TGCGCGGGCGGGTGGAGATCGCCGCCTCCGCCGGTGCGCCGGGCCGCCCGGCTGGCGCGATTCCCGCGCCCGGTACGGTG TGGGCCGATCCCGCGCTGCTCGACGCGCTGCATCTGAAGGTCGGCGACGCGGTGCGGGTCGGCCGGCGCCACTTCACGAT CGCCGCGGCGATCACGCGCGAGCTCGACCGCGGCTTCTCGTTCGTCAATTTCTCGCCGCGTCTGATGCTGCGCGAGGACG AGCTCGCCTCCACCGGCCTGGTCGGCTACGGCAGCCGCGTCACCTACCGGCTGCTGGTGGCCGGCCCCGACGCGGCCGTG GCGCGCTTCGCGGCGTTCGCGCATCAGCGCGTGGACGGCGGCAAGCTGCGCGGCGTCGCGCTCGAATCGCTGCAGGAGGG CCAGCCGCAGGTGCGCGAGACGCTCGACCGCGCGCGCCATTTCCTGACGCTGGTCTCGCTGCTCACGGCGCTGCTCTCGG CGGTGGCGATCGCGATGGCCGCACAGCGCTACATGCGCCGCCATCTCGACGGCTGCGCCGCGATGCGCTGCCTCGGTGCC AGCCAGCGCACGCTGGCCGGGCTCTTCACGCTCGAATTCGTCGCGATCGGCGTCGCCTCCGGGCTGCTCGGCGCGGCGCT CGGCTACCTGGGCCATCTCGTGCTGCTGGCCGTGCTCGGCAGCCTGATCGATGTGGTGCTGCCGCAGCCCGGCATCGCGC CCGCGCTGGTCGGGGTGGGCGCCGGGCTGGTGCTGCTGCTCGGCTTCGCGCTGCCGCCGCTGATGCCGCTCACGCGCGTG CCGCCGGTGCGCGTGCTGCGCCGCGAGTGGGGCGGCGAGGGGCGCGCCGCCTGGCTCGGCTACGGGCTCGGCGTGGTGCT GTTCGCGGCGCTGCTGATCGCGGCGGCCGGCAACCTGATGCTCGGCCTGATCGTGGCGGGCGGCTTCGCGGGCGGCCTCG TGCTGTTCGCGACGCTGGCACGCGTGCTGTTGTTCGCGGCCGCGCGCGCGGTGCGCGACGCGCGGGTCGGGGCCGGGCTC GGCTGGCGCTACGCGATCGCCTCGCTGCATCGGCGCGGCGCGGCCAGCGCGCTGCAGATCACCGCGCTCGCGCTCGGCCT GATGTGCCTGCTGCTGATCTCGATCACGCGCGACGACCTGGTGGCCGGCTGGCGCAAATCGACGCCGCCCGACGCGCCGA ACCAGTTCCTGATCGACATCCAGCCCGATCAGCGGCCCGAGGTGGTTCGTTACCTCGCCTCGCAGGGCATCGACGACGCG CCGCTCGAGCCGATGGTGCGCGGCCGCCTGATCGCGATCGACGGCCGCCCCGTGAACCCCGACAGCTACGCCGAGGCGAA CACGCGCCGGCTCGTCGACCGCGAATTCAATCTGTCGTACACGACGCAGCTGCCCGACGACAACCGGATCGTGGCAGGGC GCTGGTTCGGCGTTTCCTCGCAGCCGCAGGTGTCGATCGAGGCGGGGCTCGCGAAGGCGCTCGGCGTGAAGCTCGGCGAC ACGCTGCGCTTCGACGTGACCGGGCTCACCGTGGAGGCGCCCGTGACCAGCATCCGCAAGCTCGACTGGGGCACCTTCCG CGTGAATTTCTTCGTGCTGATGCCGCCTGCCGCGCTGGAGGACATGCCGGCGATGTACATCACGAGCTTCCATCTGCCGC CGCGGCGCTCGCGCGTGATCGACGGGTTGATCGCTCGCCAGCCCGGCATCACGGCCATCGACGTCGCGCCGATTCTCGCG CAGGTGCAGCGCGTGCTGCTGCAGGTGGTGGGTGCCGTGCAGCTGCTGTTCGGCTTCACGCTCGCGGCGGGCATCCTGGT GCTCTACACGGCCTTGGCCGGCAGCCGCGACGAGCGTGAGCGCGAGGCGGCGCTGCTGCGCGCGCTCGGCGCGTCACGCG CGCAGATCGGCGCGGTGCAGCGCGCCGAATTCGTGATCGTTGGCACCATCGCCGGCGTGTGCGCGGCGCTCGGCGCGCTC GCGATCGGCTCGGTGCTGGCCGTCCAGGTGTTCCGTTTCGAACTCGCGCTCAATCCTTGGCTGGTGCCGGCCGGCATCGC CGCGGGCATCGTCTGCGCGGGCGCGGCGGGCTGGTGGAGCCTGCGCCGGGTGCTGGCGCGTCCGGCGCTGCGCTCGTTGC GCGATGCCTGA
Upstream 100 bases:
>100_bases CGTGGGTGCTGCCGAGGCTCTGGCGCGGCGTGTCGGGCGGATTTCGCGGGATGGCGCACCAGATGGTGTCGCGCCTCAAT TCACTCGGGGGCAAGCGGGA
Downstream 100 bases:
>100_bases TGCGGTATCGTTGCGCTTTTCCCGAATTCCGGTTTCCCGTATGACCGACGATGTGACCGACGACAGCGCGCAGGCGAAGC CGAGCGCGTTCGACCTGGTG
Product: efflux ABC transporter permease
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 856; Mature: 855
Protein sequence:
>856_residues MTTQHEGVRAARGARLGAGELARQAIRMTMRDWRAGELTLLVLALVLAVAALTSVGFLSDRLRQGLERDARQMLGADFVV RGDRPVDPSFAAAARADGLATASTAIFPSMVGGTGAGAPSRLAAVKAVSAGYPLRGRVEIAASAGAPGRPAGAIPAPGTV WADPALLDALHLKVGDAVRVGRRHFTIAAAITRELDRGFSFVNFSPRLMLREDELASTGLVGYGSRVTYRLLVAGPDAAV ARFAAFAHQRVDGGKLRGVALESLQEGQPQVRETLDRARHFLTLVSLLTALLSAVAIAMAAQRYMRRHLDGCAAMRCLGA SQRTLAGLFTLEFVAIGVASGLLGAALGYLGHLVLLAVLGSLIDVVLPQPGIAPALVGVGAGLVLLLGFALPPLMPLTRV PPVRVLRREWGGEGRAAWLGYGLGVVLFAALLIAAAGNLMLGLIVAGGFAGGLVLFATLARVLLFAAARAVRDARVGAGL GWRYAIASLHRRGAASALQITALALGLMCLLLISITRDDLVAGWRKSTPPDAPNQFLIDIQPDQRPEVVRYLASQGIDDA PLEPMVRGRLIAIDGRPVNPDSYAEANTRRLVDREFNLSYTTQLPDDNRIVAGRWFGVSSQPQVSIEAGLAKALGVKLGD TLRFDVTGLTVEAPVTSIRKLDWGTFRVNFFVLMPPAALEDMPAMYITSFHLPPRRSRVIDGLIARQPGITAIDVAPILA QVQRVLLQVVGAVQLLFGFTLAAGILVLYTALAGSRDEREREAALLRALGASRAQIGAVQRAEFVIVGTIAGVCAALGAL AIGSVLAVQVFRFELALNPWLVPAGIAAGIVCAGAAGWWSLRRVLARPALRSLRDA
Sequences:
>Translated_856_residues MTTQHEGVRAARGARLGAGELARQAIRMTMRDWRAGELTLLVLALVLAVAALTSVGFLSDRLRQGLERDARQMLGADFVV RGDRPVDPSFAAAARADGLATASTAIFPSMVGGTGAGAPSRLAAVKAVSAGYPLRGRVEIAASAGAPGRPAGAIPAPGTV WADPALLDALHLKVGDAVRVGRRHFTIAAAITRELDRGFSFVNFSPRLMLREDELASTGLVGYGSRVTYRLLVAGPDAAV ARFAAFAHQRVDGGKLRGVALESLQEGQPQVRETLDRARHFLTLVSLLTALLSAVAIAMAAQRYMRRHLDGCAAMRCLGA SQRTLAGLFTLEFVAIGVASGLLGAALGYLGHLVLLAVLGSLIDVVLPQPGIAPALVGVGAGLVLLLGFALPPLMPLTRV PPVRVLRREWGGEGRAAWLGYGLGVVLFAALLIAAAGNLMLGLIVAGGFAGGLVLFATLARVLLFAAARAVRDARVGAGL GWRYAIASLHRRGAASALQITALALGLMCLLLISITRDDLVAGWRKSTPPDAPNQFLIDIQPDQRPEVVRYLASQGIDDA PLEPMVRGRLIAIDGRPVNPDSYAEANTRRLVDREFNLSYTTQLPDDNRIVAGRWFGVSSQPQVSIEAGLAKALGVKLGD TLRFDVTGLTVEAPVTSIRKLDWGTFRVNFFVLMPPAALEDMPAMYITSFHLPPRRSRVIDGLIARQPGITAIDVAPILA QVQRVLLQVVGAVQLLFGFTLAAGILVLYTALAGSRDEREREAALLRALGASRAQIGAVQRAEFVIVGTIAGVCAALGAL AIGSVLAVQVFRFELALNPWLVPAGIAAGIVCAGAAGWWSLRRVLARPALRSLRDA >Mature_855_residues TTQHEGVRAARGARLGAGELARQAIRMTMRDWRAGELTLLVLALVLAVAALTSVGFLSDRLRQGLERDARQMLGADFVVR GDRPVDPSFAAAARADGLATASTAIFPSMVGGTGAGAPSRLAAVKAVSAGYPLRGRVEIAASAGAPGRPAGAIPAPGTVW ADPALLDALHLKVGDAVRVGRRHFTIAAAITRELDRGFSFVNFSPRLMLREDELASTGLVGYGSRVTYRLLVAGPDAAVA RFAAFAHQRVDGGKLRGVALESLQEGQPQVRETLDRARHFLTLVSLLTALLSAVAIAMAAQRYMRRHLDGCAAMRCLGAS QRTLAGLFTLEFVAIGVASGLLGAALGYLGHLVLLAVLGSLIDVVLPQPGIAPALVGVGAGLVLLLGFALPPLMPLTRVP PVRVLRREWGGEGRAAWLGYGLGVVLFAALLIAAAGNLMLGLIVAGGFAGGLVLFATLARVLLFAAARAVRDARVGAGLG WRYAIASLHRRGAASALQITALALGLMCLLLISITRDDLVAGWRKSTPPDAPNQFLIDIQPDQRPEVVRYLASQGIDDAP LEPMVRGRLIAIDGRPVNPDSYAEANTRRLVDREFNLSYTTQLPDDNRIVAGRWFGVSSQPQVSIEAGLAKALGVKLGDT LRFDVTGLTVEAPVTSIRKLDWGTFRVNFFVLMPPAALEDMPAMYITSFHLPPRRSRVIDGLIARQPGITAIDVAPILAQ VQRVLLQVVGAVQLLFGFTLAAGILVLYTALAGSRDEREREAALLRALGASRAQIGAVQRAEFVIVGTIAGVCAALGALA IGSVLAVQVFRFELALNPWLVPAGIAAGIVCAGAAGWWSLRRVLARPALRSLRDA
Specific function: Unknown
COG id: COG3127
COG function: function code Q; Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ABC-4 integral membrane protein family [H]
Homologues:
Organism=Escherichia coli, GI1786704, Length=814, Percent_Identity=31.8181818181818, Blast_Score=316, Evalue=5e-87,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003838 [H]
Pfam domain/function: PF02687 FtsX [H]
EC number: NA
Molecular weight: Translated: 90247; Mature: 90116
Theoretical pI: Translated: 11.12; Mature: 11.12
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTQHEGVRAARGARLGAGELARQAIRMTMRDWRAGELTLLVLALVLAVAALTSVGFLSD CCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH RLRQGLERDARQMLGADFVVRGDRPVDPSFAAAARADGLATASTAIFPSMVGGTGAGAPS HHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCH RLAAVKAVSAGYPLRGRVEIAASAGAPGRPAGAIPAPGTVWADPALLDALHLKVGDAVRV HHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCHHHHH GRRHFTIAAAITRELDRGFSFVNFSPRLMLREDELASTGLVGYGSRVTYRLLVAGPDAAV CCHHHHHHHHHHHHHHCCCCEEECCCCEEEECHHHHHCCCCCCCCCEEEEEEEECCCHHH ARFAAFAHQRVDGGKLRGVALESLQEGQPQVRETLDRARHFLTLVSLLTALLSAVAIAMA HHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AQRYMRRHLDGCAAMRCLGASQRTLAGLFTLEFVAIGVASGLLGAALGYLGHLVLLAVLG HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SLIDVVLPQPGIAPALVGVGAGLVLLLGFALPPLMPLTRVPPVRVLRREWGGEGRAAWLG HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCEEHHH YGLGVVLFAALLIAAAGNLMLGLIVAGGFAGGLVLFATLARVLLFAAARAVRDARVGAGL HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC GWRYAIASLHRRGAASALQITALALGLMCLLLISITRDDLVAGWRKSTPPDAPNQFLIDI CHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEE QPDQRPEVVRYLASQGIDDAPLEPMVRGRLIAIDGRPVNPDSYAEANTRRLVDREFNLSY CCCCCHHHHHHHHHCCCCCCCCCHHHCCEEEEECCCCCCCCCCCCCHHHHHHCCCCCCEE TTQLPDDNRIVAGRWFGVSSQPQVSIEAGLAKALGVKLGDTLRFDVTGLTVEAPVTSIRK EEECCCCCEEEEEEEECCCCCCCEEHHHHHHHHHCCCCCCEEEEEEECEEEECCHHHHHH LDWGTFRVNFFVLMPPAALEDMPAMYITSFHLPPRRSRVIDGLIARQPGITAIDVAPILA CCCCEEEEEEEEEECCHHHHHCCHHHHEEECCCCHHHHHHHHHHHCCCCCCEEHHHHHHH QVQRVLLQVVGAVQLLFGFTLAAGILVLYTALAGSRDEREREAALLRALGASRAQIGAVQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHH RAEFVIVGTIAGVCAALGALAIGSVLAVQVFRFELALNPWLVPAGIAAGIVCAGAAGWWS HCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHH LRRVLARPALRSLRDA HHHHHHHHHHHHHCCC >Mature Secondary Structure TTQHEGVRAARGARLGAGELARQAIRMTMRDWRAGELTLLVLALVLAVAALTSVGFLSD CCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH RLRQGLERDARQMLGADFVVRGDRPVDPSFAAAARADGLATASTAIFPSMVGGTGAGAPS HHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCH RLAAVKAVSAGYPLRGRVEIAASAGAPGRPAGAIPAPGTVWADPALLDALHLKVGDAVRV HHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCHHHHH GRRHFTIAAAITRELDRGFSFVNFSPRLMLREDELASTGLVGYGSRVTYRLLVAGPDAAV CCHHHHHHHHHHHHHHCCCCEEECCCCEEEECHHHHHCCCCCCCCCEEEEEEEECCCHHH ARFAAFAHQRVDGGKLRGVALESLQEGQPQVRETLDRARHFLTLVSLLTALLSAVAIAMA HHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AQRYMRRHLDGCAAMRCLGASQRTLAGLFTLEFVAIGVASGLLGAALGYLGHLVLLAVLG HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SLIDVVLPQPGIAPALVGVGAGLVLLLGFALPPLMPLTRVPPVRVLRREWGGEGRAAWLG HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCEEHHH YGLGVVLFAALLIAAAGNLMLGLIVAGGFAGGLVLFATLARVLLFAAARAVRDARVGAGL HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC GWRYAIASLHRRGAASALQITALALGLMCLLLISITRDDLVAGWRKSTPPDAPNQFLIDI CHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEE QPDQRPEVVRYLASQGIDDAPLEPMVRGRLIAIDGRPVNPDSYAEANTRRLVDREFNLSY CCCCCHHHHHHHHHCCCCCCCCCHHHCCEEEEECCCCCCCCCCCCCHHHHHHCCCCCCEE TTQLPDDNRIVAGRWFGVSSQPQVSIEAGLAKALGVKLGDTLRFDVTGLTVEAPVTSIRK EEECCCCCEEEEEEEECCCCCCCEEHHHHHHHHHCCCCCCEEEEEEECEEEECCHHHHHH LDWGTFRVNFFVLMPPAALEDMPAMYITSFHLPPRRSRVIDGLIARQPGITAIDVAPILA CCCCEEEEEEEEEECCHHHHHCCHHHHEEECCCCHHHHHHHHHHHCCCCCCEEHHHHHHH QVQRVLLQVVGAVQLLFGFTLAAGILVLYTALAGSRDEREREAALLRALGASRAQIGAVQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHH RAEFVIVGTIAGVCAALGALAIGSVLAVQVFRFELALNPWLVPAGIAAGIVCAGAAGWWS HCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHH LRRVLARPALRSLRDA HHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9278503 [H]