Definition Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence.
Accession NC_012724
Length 3,906,507

Click here to switch to the map view.

The map label for this gene is ychM [H]

Identifier: 238028151

GI number: 238028151

Start: 2964829

End: 2966361

Strand: Direct

Name: ychM [H]

Synonym: bglu_1g26020

Alternate gene names: 238028151

Gene position: 2964829-2966361 (Clockwise)

Preceding gene: 238028150

Following gene: 238028158

Centisome position: 75.89

GC content: 70.78

Gene sequence:

>1533_bases
ATGAATCCACGCACCTTCCTTTCCACGTTTCCGCGCGACGCCGTTGCCGGCACCGTGGTGTTCCTCGTCGCGCTGCCACT
GTGCCTCGGCATTGCCAATGCCTCCGGCGTCGAGCCATTCGCGGGGCTCGTCTCCGGCATCATCGGCGGCCTCGTGGTCG
CGCTGCTGAGCGGCTCGTCGCTGTCCGTGAGCGGCCCCGCGGCCGGCCTTGTCGTAATCGTCGTCGACGGCATCGCGCAG
CTCGGCGGCTTCCCGGCCTTCCTGCTCGCCGTCGCGCTGTCGGGCCTGCTGCAGCTGGGCCTCGGCCTGCTGCGCGCGGG
CCGGCTCGCGGCCTACGTGCCCTCGCCGGTGATCAAGGGCATGCTGGCCGCGATCGGCCTGCTGCTGATCGTCAAGCAGG
TGCCGTTCGCGCTCGGCCTGCACGGCGGCACCGCGCCGTTCAGCGCGCATGCGCTTGCCGCCGCCGCGCTCGCGCTGGCC
TCGCTCGCGCTGCTGGTGGCCTGGGATTCGGGCGCGCTGCGCCGCTTCGCGCTGGTCCGCAACGTGCCGGCGCCGCTCGT
GGTGGTGGTGCTCGGCATCGCCGTGACGCTCGCGCTCGATGCACTCGCGCCCGCCTTCGCGCCGCCCGCCGAACACCGCG
TCGCGCTGCCGGCACTCGATTCGCTCGCCGCGCTCGACGGCGCGCTGGCGAACATCGAATTCGGCCCTCATTTCGCTCAA
CTCTGGAATCCGGCGGTCTGGCGCGTGGCCATCACGCTCGCGATCGTCGCCAGCCTCGAAACGCTGCTCTCGCTCGAAGC
CGTCGAACAGATCGATCCGAAGCGCCGCGCACCGTTGCCGGACCGCGAGCTGAAGGCGCAGGGCATCGGCAACCTGGTGG
CGGGCGTCGTCGGCGGCCTGCCGATCACCTCGGTGATCGTGCGCAGCTCGGTCAATGTCCACGCCGGCGCGCAAAGCCGA
ATCTCGGCCGTGGTTCACGGCGTGCTGCTGCTCGCCAGCGTGTTCCTGCTGACCGAACTCATCAATCTGATTCCGCTCGC
GACGCTCGCCGCGATCCTGATCCACACCGGATTCAAGCTCGCGAAGCCGGCGCTGTTCGCGGCCGTGGCCCGGCAGGGAC
CGGCGGCGTTCGCGCCGTTCGTGGCGACCATCGCCGGCGTGCTGGCAATCGACCTGCTGGCCGGCATCGGACTGGGCATC
GTCTGCAGCGTGCTGGCCGTCGCGCTCGCGAACCTGCGCAACCCGGCCACGCTCGCGCGGCACGACGACCATTACTTGCT
GACGTTTCGCAAGGACGTGTCGTTCCTCGGCAAGGTGCGCGTGAAGCACGACCTGCGGCAAATCCCGGATGGCGCGGTGG
TGATCATCGACGCGACGCGCGCCGACTATCTCGATCACGACGTGCGTGAGCTGATCGACGCGTTCGTCGCCGAGGCGCCG
GCGCGCGGCATCAGCGTGGACTATCGCCAGCCGGCGCGCTCGCGCGACGGGAGCTGGCGCTTCGGCGCGCTGCGCAGCCC
GGCGCCGCAATAA

Upstream 100 bases:

>100_bases
CGACGCCAGCGGCATGCCACGCGACGCCTCGCGCGCCGACGTGCTGAAGGCTGCCTGAGCCGCACCCGCTCCCCATTTCG
CCCAGCCCTGTCCCGAGATC

Downstream 100 bases:

>100_bases
CGCGCCCCCAAACGACGACGCCCCACGCGGCCGGCGGCAGCGTGGGGCGTCGTATCGTTGCGCCGCCGGGCCGGCGGCCC
GGCATCAGGACAGCTGCGGG

Product: sulfate transporter

Products: Proton [Cytoplasm]; SO42- [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 510; Mature: 510

Protein sequence:

>510_residues
MNPRTFLSTFPRDAVAGTVVFLVALPLCLGIANASGVEPFAGLVSGIIGGLVVALLSGSSLSVSGPAAGLVVIVVDGIAQ
LGGFPAFLLAVALSGLLQLGLGLLRAGRLAAYVPSPVIKGMLAAIGLLLIVKQVPFALGLHGGTAPFSAHALAAAALALA
SLALLVAWDSGALRRFALVRNVPAPLVVVVLGIAVTLALDALAPAFAPPAEHRVALPALDSLAALDGALANIEFGPHFAQ
LWNPAVWRVAITLAIVASLETLLSLEAVEQIDPKRRAPLPDRELKAQGIGNLVAGVVGGLPITSVIVRSSVNVHAGAQSR
ISAVVHGVLLLASVFLLTELINLIPLATLAAILIHTGFKLAKPALFAAVARQGPAAFAPFVATIAGVLAIDLLAGIGLGI
VCSVLAVALANLRNPATLARHDDHYLLTFRKDVSFLGKVRVKHDLRQIPDGAVVIIDATRADYLDHDVRELIDAFVAEAP
ARGISVDYRQPARSRDGSWRFGALRSPAPQ

Sequences:

>Translated_510_residues
MNPRTFLSTFPRDAVAGTVVFLVALPLCLGIANASGVEPFAGLVSGIIGGLVVALLSGSSLSVSGPAAGLVVIVVDGIAQ
LGGFPAFLLAVALSGLLQLGLGLLRAGRLAAYVPSPVIKGMLAAIGLLLIVKQVPFALGLHGGTAPFSAHALAAAALALA
SLALLVAWDSGALRRFALVRNVPAPLVVVVLGIAVTLALDALAPAFAPPAEHRVALPALDSLAALDGALANIEFGPHFAQ
LWNPAVWRVAITLAIVASLETLLSLEAVEQIDPKRRAPLPDRELKAQGIGNLVAGVVGGLPITSVIVRSSVNVHAGAQSR
ISAVVHGVLLLASVFLLTELINLIPLATLAAILIHTGFKLAKPALFAAVARQGPAAFAPFVATIAGVLAIDLLAGIGLGI
VCSVLAVALANLRNPATLARHDDHYLLTFRKDVSFLGKVRVKHDLRQIPDGAVVIIDATRADYLDHDVRELIDAFVAEAP
ARGISVDYRQPARSRDGSWRFGALRSPAPQ
>Mature_510_residues
MNPRTFLSTFPRDAVAGTVVFLVALPLCLGIANASGVEPFAGLVSGIIGGLVVALLSGSSLSVSGPAAGLVVIVVDGIAQ
LGGFPAFLLAVALSGLLQLGLGLLRAGRLAAYVPSPVIKGMLAAIGLLLIVKQVPFALGLHGGTAPFSAHALAAAALALA
SLALLVAWDSGALRRFALVRNVPAPLVVVVLGIAVTLALDALAPAFAPPAEHRVALPALDSLAALDGALANIEFGPHFAQ
LWNPAVWRVAITLAIVASLETLLSLEAVEQIDPKRRAPLPDRELKAQGIGNLVAGVVGGLPITSVIVRSSVNVHAGAQSR
ISAVVHGVLLLASVFLLTELINLIPLATLAAILIHTGFKLAKPALFAAVARQGPAAFAPFVATIAGVLAIDLLAGIGLGI
VCSVLAVALANLRNPATLARHDDHYLLTFRKDVSFLGKVRVKHDLRQIPDGAVVIIDATRADYLDHDVRELIDAFVAEAP
ARGISVDYRQPARSRDGSWRFGALRSPAPQ

Specific function: Possible sulfate transporter [H]

COG id: COG0659

COG function: function code P; Sulfate permease and related transporters (MFS superfamily)

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 STAS domain [H]

Homologues:

Organism=Homo sapiens, GI94721255, Length=284, Percent_Identity=24.6478873239437, Blast_Score=66, Evalue=9e-11,
Organism=Homo sapiens, GI94721257, Length=284, Percent_Identity=24.6478873239437, Blast_Score=66, Evalue=9e-11,
Organism=Homo sapiens, GI94721253, Length=284, Percent_Identity=24.6478873239437, Blast_Score=66, Evalue=9e-11,
Organism=Homo sapiens, GI94721259, Length=284, Percent_Identity=24.6478873239437, Blast_Score=66, Evalue=9e-11,
Organism=Escherichia coli, GI87081859, Length=392, Percent_Identity=30.6122448979592, Blast_Score=121, Evalue=1e-28,
Organism=Drosophila melanogaster, GI85815873, Length=439, Percent_Identity=23.9179954441913, Blast_Score=72, Evalue=9e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018045
- InterPro:   IPR002645
- InterPro:   IPR001902
- InterPro:   IPR011547 [H]

Pfam domain/function: PF01740 STAS; PF00916 Sulfate_transp [H]

EC number: NA

Molecular weight: Translated: 52507; Mature: 52507

Theoretical pI: Translated: 10.00; Mature: 10.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNPRTFLSTFPRDAVAGTVVFLVALPLCLGIANASGVEPFAGLVSGIIGGLVVALLSGSS
CCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCC
LSVSGPAAGLVVIVVDGIAQLGGFPAFLLAVALSGLLQLGLGLLRAGRLAAYVPSPVIKG
CCCCCCCCCEEEEEEHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCHHHHH
MLAAIGLLLIVKQVPFALGLHGGTAPFSAHALAAAALALASLALLVAWDSGALRRFALVR
HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
NVPAPLVVVVLGIAVTLALDALAPAFAPPAEHRVALPALDSLAALDGALANIEFGPHFAQ
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHHHHCCCCCCHHHH
LWNPAVWRVAITLAIVASLETLLSLEAVEQIDPKRRAPLPDRELKAQGIGNLVAGVVGGL
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC
PITSVIVRSSVNVHAGAQSRISAVVHGVLLLASVFLLTELINLIPLATLAAILIHTGFKL
HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
AKPALFAAVARQGPAAFAPFVATIAGVLAIDLLAGIGLGIVCSVLAVALANLRNPATLAR
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHC
HDDHYLLTFRKDVSFLGKVRVKHDLRQIPDGAVVIIDATRADYLDHDVRELIDAFVAEAP
CCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHCC
ARGISVDYRQPARSRDGSWRFGALRSPAPQ
CCCCCCCCCCCCCCCCCCEECCCCCCCCCC
>Mature Secondary Structure
MNPRTFLSTFPRDAVAGTVVFLVALPLCLGIANASGVEPFAGLVSGIIGGLVVALLSGSS
CCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCC
LSVSGPAAGLVVIVVDGIAQLGGFPAFLLAVALSGLLQLGLGLLRAGRLAAYVPSPVIKG
CCCCCCCCCEEEEEEHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCHHHHH
MLAAIGLLLIVKQVPFALGLHGGTAPFSAHALAAAALALASLALLVAWDSGALRRFALVR
HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
NVPAPLVVVVLGIAVTLALDALAPAFAPPAEHRVALPALDSLAALDGALANIEFGPHFAQ
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHHHHCCCCCCHHHH
LWNPAVWRVAITLAIVASLETLLSLEAVEQIDPKRRAPLPDRELKAQGIGNLVAGVVGGL
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC
PITSVIVRSSVNVHAGAQSRISAVVHGVLLLASVFLLTELINLIPLATLAAILIHTGFKL
HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
AKPALFAAVARQGPAAFAPFVATIAGVLAIDLLAGIGLGIVCSVLAVALANLRNPATLAR
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHC
HDDHYLLTFRKDVSFLGKVRVKHDLRQIPDGAVVIIDATRADYLDHDVRELIDAFVAEAP
CCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHCC
ARGISVDYRQPARSRDGSWRFGALRSPAPQ
CCCCCCCCCCCCCCCCCCEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Proton [Periplasm]; SO42- [Periplasm] [C]

Specific reaction: Proton [Periplasm] + SO42- [Periplasm] = Proton [Cytoplasm] + SO42- [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]