| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is ychM [H]
Identifier: 238028151
GI number: 238028151
Start: 2964829
End: 2966361
Strand: Direct
Name: ychM [H]
Synonym: bglu_1g26020
Alternate gene names: 238028151
Gene position: 2964829-2966361 (Clockwise)
Preceding gene: 238028150
Following gene: 238028158
Centisome position: 75.89
GC content: 70.78
Gene sequence:
>1533_bases ATGAATCCACGCACCTTCCTTTCCACGTTTCCGCGCGACGCCGTTGCCGGCACCGTGGTGTTCCTCGTCGCGCTGCCACT GTGCCTCGGCATTGCCAATGCCTCCGGCGTCGAGCCATTCGCGGGGCTCGTCTCCGGCATCATCGGCGGCCTCGTGGTCG CGCTGCTGAGCGGCTCGTCGCTGTCCGTGAGCGGCCCCGCGGCCGGCCTTGTCGTAATCGTCGTCGACGGCATCGCGCAG CTCGGCGGCTTCCCGGCCTTCCTGCTCGCCGTCGCGCTGTCGGGCCTGCTGCAGCTGGGCCTCGGCCTGCTGCGCGCGGG CCGGCTCGCGGCCTACGTGCCCTCGCCGGTGATCAAGGGCATGCTGGCCGCGATCGGCCTGCTGCTGATCGTCAAGCAGG TGCCGTTCGCGCTCGGCCTGCACGGCGGCACCGCGCCGTTCAGCGCGCATGCGCTTGCCGCCGCCGCGCTCGCGCTGGCC TCGCTCGCGCTGCTGGTGGCCTGGGATTCGGGCGCGCTGCGCCGCTTCGCGCTGGTCCGCAACGTGCCGGCGCCGCTCGT GGTGGTGGTGCTCGGCATCGCCGTGACGCTCGCGCTCGATGCACTCGCGCCCGCCTTCGCGCCGCCCGCCGAACACCGCG TCGCGCTGCCGGCACTCGATTCGCTCGCCGCGCTCGACGGCGCGCTGGCGAACATCGAATTCGGCCCTCATTTCGCTCAA CTCTGGAATCCGGCGGTCTGGCGCGTGGCCATCACGCTCGCGATCGTCGCCAGCCTCGAAACGCTGCTCTCGCTCGAAGC CGTCGAACAGATCGATCCGAAGCGCCGCGCACCGTTGCCGGACCGCGAGCTGAAGGCGCAGGGCATCGGCAACCTGGTGG CGGGCGTCGTCGGCGGCCTGCCGATCACCTCGGTGATCGTGCGCAGCTCGGTCAATGTCCACGCCGGCGCGCAAAGCCGA ATCTCGGCCGTGGTTCACGGCGTGCTGCTGCTCGCCAGCGTGTTCCTGCTGACCGAACTCATCAATCTGATTCCGCTCGC GACGCTCGCCGCGATCCTGATCCACACCGGATTCAAGCTCGCGAAGCCGGCGCTGTTCGCGGCCGTGGCCCGGCAGGGAC CGGCGGCGTTCGCGCCGTTCGTGGCGACCATCGCCGGCGTGCTGGCAATCGACCTGCTGGCCGGCATCGGACTGGGCATC GTCTGCAGCGTGCTGGCCGTCGCGCTCGCGAACCTGCGCAACCCGGCCACGCTCGCGCGGCACGACGACCATTACTTGCT GACGTTTCGCAAGGACGTGTCGTTCCTCGGCAAGGTGCGCGTGAAGCACGACCTGCGGCAAATCCCGGATGGCGCGGTGG TGATCATCGACGCGACGCGCGCCGACTATCTCGATCACGACGTGCGTGAGCTGATCGACGCGTTCGTCGCCGAGGCGCCG GCGCGCGGCATCAGCGTGGACTATCGCCAGCCGGCGCGCTCGCGCGACGGGAGCTGGCGCTTCGGCGCGCTGCGCAGCCC GGCGCCGCAATAA
Upstream 100 bases:
>100_bases CGACGCCAGCGGCATGCCACGCGACGCCTCGCGCGCCGACGTGCTGAAGGCTGCCTGAGCCGCACCCGCTCCCCATTTCG CCCAGCCCTGTCCCGAGATC
Downstream 100 bases:
>100_bases CGCGCCCCCAAACGACGACGCCCCACGCGGCCGGCGGCAGCGTGGGGCGTCGTATCGTTGCGCCGCCGGGCCGGCGGCCC GGCATCAGGACAGCTGCGGG
Product: sulfate transporter
Products: Proton [Cytoplasm]; SO42- [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 510; Mature: 510
Protein sequence:
>510_residues MNPRTFLSTFPRDAVAGTVVFLVALPLCLGIANASGVEPFAGLVSGIIGGLVVALLSGSSLSVSGPAAGLVVIVVDGIAQ LGGFPAFLLAVALSGLLQLGLGLLRAGRLAAYVPSPVIKGMLAAIGLLLIVKQVPFALGLHGGTAPFSAHALAAAALALA SLALLVAWDSGALRRFALVRNVPAPLVVVVLGIAVTLALDALAPAFAPPAEHRVALPALDSLAALDGALANIEFGPHFAQ LWNPAVWRVAITLAIVASLETLLSLEAVEQIDPKRRAPLPDRELKAQGIGNLVAGVVGGLPITSVIVRSSVNVHAGAQSR ISAVVHGVLLLASVFLLTELINLIPLATLAAILIHTGFKLAKPALFAAVARQGPAAFAPFVATIAGVLAIDLLAGIGLGI VCSVLAVALANLRNPATLARHDDHYLLTFRKDVSFLGKVRVKHDLRQIPDGAVVIIDATRADYLDHDVRELIDAFVAEAP ARGISVDYRQPARSRDGSWRFGALRSPAPQ
Sequences:
>Translated_510_residues MNPRTFLSTFPRDAVAGTVVFLVALPLCLGIANASGVEPFAGLVSGIIGGLVVALLSGSSLSVSGPAAGLVVIVVDGIAQ LGGFPAFLLAVALSGLLQLGLGLLRAGRLAAYVPSPVIKGMLAAIGLLLIVKQVPFALGLHGGTAPFSAHALAAAALALA SLALLVAWDSGALRRFALVRNVPAPLVVVVLGIAVTLALDALAPAFAPPAEHRVALPALDSLAALDGALANIEFGPHFAQ LWNPAVWRVAITLAIVASLETLLSLEAVEQIDPKRRAPLPDRELKAQGIGNLVAGVVGGLPITSVIVRSSVNVHAGAQSR ISAVVHGVLLLASVFLLTELINLIPLATLAAILIHTGFKLAKPALFAAVARQGPAAFAPFVATIAGVLAIDLLAGIGLGI VCSVLAVALANLRNPATLARHDDHYLLTFRKDVSFLGKVRVKHDLRQIPDGAVVIIDATRADYLDHDVRELIDAFVAEAP ARGISVDYRQPARSRDGSWRFGALRSPAPQ >Mature_510_residues MNPRTFLSTFPRDAVAGTVVFLVALPLCLGIANASGVEPFAGLVSGIIGGLVVALLSGSSLSVSGPAAGLVVIVVDGIAQ LGGFPAFLLAVALSGLLQLGLGLLRAGRLAAYVPSPVIKGMLAAIGLLLIVKQVPFALGLHGGTAPFSAHALAAAALALA SLALLVAWDSGALRRFALVRNVPAPLVVVVLGIAVTLALDALAPAFAPPAEHRVALPALDSLAALDGALANIEFGPHFAQ LWNPAVWRVAITLAIVASLETLLSLEAVEQIDPKRRAPLPDRELKAQGIGNLVAGVVGGLPITSVIVRSSVNVHAGAQSR ISAVVHGVLLLASVFLLTELINLIPLATLAAILIHTGFKLAKPALFAAVARQGPAAFAPFVATIAGVLAIDLLAGIGLGI VCSVLAVALANLRNPATLARHDDHYLLTFRKDVSFLGKVRVKHDLRQIPDGAVVIIDATRADYLDHDVRELIDAFVAEAP ARGISVDYRQPARSRDGSWRFGALRSPAPQ
Specific function: Possible sulfate transporter [H]
COG id: COG0659
COG function: function code P; Sulfate permease and related transporters (MFS superfamily)
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 STAS domain [H]
Homologues:
Organism=Homo sapiens, GI94721255, Length=284, Percent_Identity=24.6478873239437, Blast_Score=66, Evalue=9e-11, Organism=Homo sapiens, GI94721257, Length=284, Percent_Identity=24.6478873239437, Blast_Score=66, Evalue=9e-11, Organism=Homo sapiens, GI94721253, Length=284, Percent_Identity=24.6478873239437, Blast_Score=66, Evalue=9e-11, Organism=Homo sapiens, GI94721259, Length=284, Percent_Identity=24.6478873239437, Blast_Score=66, Evalue=9e-11, Organism=Escherichia coli, GI87081859, Length=392, Percent_Identity=30.6122448979592, Blast_Score=121, Evalue=1e-28, Organism=Drosophila melanogaster, GI85815873, Length=439, Percent_Identity=23.9179954441913, Blast_Score=72, Evalue=9e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR018045 - InterPro: IPR002645 - InterPro: IPR001902 - InterPro: IPR011547 [H]
Pfam domain/function: PF01740 STAS; PF00916 Sulfate_transp [H]
EC number: NA
Molecular weight: Translated: 52507; Mature: 52507
Theoretical pI: Translated: 10.00; Mature: 10.00
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 0.4 %Met (Translated Protein) 0.8 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 0.4 %Met (Mature Protein) 0.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNPRTFLSTFPRDAVAGTVVFLVALPLCLGIANASGVEPFAGLVSGIIGGLVVALLSGSS CCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCC LSVSGPAAGLVVIVVDGIAQLGGFPAFLLAVALSGLLQLGLGLLRAGRLAAYVPSPVIKG CCCCCCCCCEEEEEEHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCHHHHH MLAAIGLLLIVKQVPFALGLHGGTAPFSAHALAAAALALASLALLVAWDSGALRRFALVR HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH NVPAPLVVVVLGIAVTLALDALAPAFAPPAEHRVALPALDSLAALDGALANIEFGPHFAQ CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHHHHCCCCCCHHHH LWNPAVWRVAITLAIVASLETLLSLEAVEQIDPKRRAPLPDRELKAQGIGNLVAGVVGGL HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC PITSVIVRSSVNVHAGAQSRISAVVHGVLLLASVFLLTELINLIPLATLAAILIHTGFKL HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH AKPALFAAVARQGPAAFAPFVATIAGVLAIDLLAGIGLGIVCSVLAVALANLRNPATLAR HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHC HDDHYLLTFRKDVSFLGKVRVKHDLRQIPDGAVVIIDATRADYLDHDVRELIDAFVAEAP CCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHCC ARGISVDYRQPARSRDGSWRFGALRSPAPQ CCCCCCCCCCCCCCCCCCEECCCCCCCCCC >Mature Secondary Structure MNPRTFLSTFPRDAVAGTVVFLVALPLCLGIANASGVEPFAGLVSGIIGGLVVALLSGSS CCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCC LSVSGPAAGLVVIVVDGIAQLGGFPAFLLAVALSGLLQLGLGLLRAGRLAAYVPSPVIKG CCCCCCCCCEEEEEEHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCHHHHH MLAAIGLLLIVKQVPFALGLHGGTAPFSAHALAAAALALASLALLVAWDSGALRRFALVR HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH NVPAPLVVVVLGIAVTLALDALAPAFAPPAEHRVALPALDSLAALDGALANIEFGPHFAQ CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHHHHCCCCCCHHHH LWNPAVWRVAITLAIVASLETLLSLEAVEQIDPKRRAPLPDRELKAQGIGNLVAGVVGGL HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC PITSVIVRSSVNVHAGAQSRISAVVHGVLLLASVFLLTELINLIPLATLAAILIHTGFKL HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH AKPALFAAVARQGPAAFAPFVATIAGVLAIDLLAGIGLGIVCSVLAVALANLRNPATLAR HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHC HDDHYLLTFRKDVSFLGKVRVKHDLRQIPDGAVVIIDATRADYLDHDVRELIDAFVAEAP CCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHCC ARGISVDYRQPARSRDGSWRFGALRSPAPQ CCCCCCCCCCCCCCCCCCEECCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: Proton [Periplasm]; SO42- [Periplasm] [C]
Specific reaction: Proton [Periplasm] + SO42- [Periplasm] = Proton [Cytoplasm] + SO42- [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]