| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is pheT [H]
Identifier: 238027726
GI number: 238027726
Start: 2334033
End: 2336462
Strand: Reverse
Name: pheT [H]
Synonym: bglu_1g21470
Alternate gene names: 238027726
Gene position: 2336462-2334033 (Counterclockwise)
Preceding gene: 238027727
Following gene: 238027725
Centisome position: 59.81
GC content: 68.07
Gene sequence:
>2430_bases ATGCAATTCCCTGAATCCTGGTTGAGAACCTTTGTCGATCCGCAGCTGACGACTGACGAGCTGTCGCATGCGCTGACGAT GGCCGGGCTCGAAGTCGAGTCGCTGCGTCCGGCCGCGCCGCCGACCTCGCGCATCGTCGTCGGCCGCGTGCTCGAAGTGG TGAAGCATCCGGACGCGGACAAGCTGAACGTCTGCCAGGTCGATGCCGGCACGGGCGCGACGCTGAACATCGTCTGCGGG GCGCCGAACGTTGCGCCGGGCATCAAGGTGCCGGTCGCGCTGGTCGGCGCGGAACTGCCGCCCGCCGAGGAGGGCGGCGA GCCGTTCCGGATTCGGCTGTCGAAGCTGCGCGGCGTCGAGAGCCAGGGCATGCTCTGCTCGGCGCGCGAGCTGAAGCTGT CCGACGATCACAGCGGCCTGATGATCCTGCCCGAGGACACGCCGATCGGCCGCGACATCCGCGAGGTGCTGAACCTCGAC GACACGATCTTCGAAATCAAGCTGACGCCGAACAAGGCCGACTGCCTGTCGGTATACGGCATCGCGCGCGAAACCGCCGC GATCACGGGCGCGCCGCTGAAGGCCGTCGCGTTCGCGCCGGTGGCCACCGAGCTGGACGAAACGCTGCCGGTGCGCATTT CCGCGCCGGATCTGTGCGGCCGCTTCTCGGGCCGCGTAATCCGCGGCGTGAACGCACGCGCGAAGACGCCGCAATGGATG GTCGAGCGCCTCGAGCGCTCGGGGCAGCGCAGCGTGTCGGCGCTGGTCGACATCTCGAACTATGTGATGTTCGAACTCGG CCGCCCGTCGCACGTGTTCGACCTCGACAAGATCCACGGCGCGATCGACGTGCGCTGGGGCCGGCGCGGCGAGACGCTGA AGCTGCTGAACGGCAACACGGTCGAACTCGACGAGACGGTCGGCGTGATTGCCGATGAAGGGCAGGTGGAGAGCCTTGCG GGCATCATGGGCGGCGACAGCACGGCCGTCACGCTCGACACCACCAACATCTATCTCGAAGCGGCGTTCTGGTGGCCGGA CAGCATCCGCGGCCGCTCGCGCAAGTACAACTTCTCGACCGACGCGGGCCACCGCTTCGAGCGCGGCGTCGATTATTCGA CGACGGTCGAGCATCTCGAGCGCATCACGCAGCTGATCCTCGAGATCTGCGGCGGCCAGGCCGGGCCGGTCGACGACCAG GCGGTGAACCTGCCGACGCGCGCGCCGGTCGCGATGCGCGTGGCGCGCGCGAACCGCATCATCGGCGTAGCGATCGGCGC CGACGAGATCGCCGCCATCTTCACGCGGCTCGGCCTGAGCTTCGAGCGCGACGGCGACACCTTCCTGGTCACGCCGCCGC CGCACCGCTTCGACATCGAGATCGAGGAAGACCTGATCGAGGAAGTCGCGCGCATCCACGGCTTCGAGAAGATCCCGGCG CGCCCGCCGGTGGCGACCAGCGAAATGCGCGCGACCAACGAGACGCAGCGCTCGATCCATACCATCCGCCATGCGCTCGC CGCGCGCGATTACGCCGAGACGGTCAACTTCAGCTTCGTCGACGCCGACTGGGAACGCGACTTCGCCGGCAATACCCGCC CGGTGCGTCTGCTCAACCCGATCGCGAGCCAGCTGTCGGTGATGCGCACCACGCTGTTCGGCAGCCTCGTCAACGTGCTG CGTCACAACCTGAACCGCCGCGCGGACCGCGTGCGCGCGTTCGAGACCGGCCGCGTGTTCCTGGCCGATCCCACCGTCGC GGCGGGCGAGCTGACGGTCGAGGGTTACGCGCAGCCGAAGCGGGTCGGCGCGCTCGCATATGGCCCGCTGCTCGAGGAGC AGTGGGGTGCGCCCACGCGCCAGGTCGATTTCTTCGACGTGAAGGGCGACCTGGAAGCGCTGCTCGCGCCGGCGGTGGCT CGTTTCGTGAAGGCCGAGCACCCGGCGCTGCATCCGGGCCGCAGCGCCCGCATCGAACTCGACGGCCGCGCGGTCGGCTG GATCGGCGAACTGCACCCGCGCCTGATGCAGCAGTACGAGCTGCCGCACGCGCCGGTGATGTTCGAGATCGATGCCGACG CGCTGATCGCACGCGCGCTGCCGGTGCCGACCGACGTGTCGAAATTCCCGCCGGTGCGTCGTGATATCGCGGTGGTCGTC GATCAGGGCGTCGAGGCGCAGACGCTGTTCGACGCCATGCAGGGCGCGCTGGCCGACGAGGCATGCAAGTTCGTCCAGAA GATTGTACTCTTTGACGAATTTCGTGCAAAATCAAATACTTCCGGCGGCCTTGCGATGCACGAGAAAAGCCTGGCGTTCC GCGTCGTCCTGCAGGATGACGCCGGCACGCTGCAGGACGAAGTGGTCGAGCGCGCGATCCGGGCCCTCGTTGACAGCCTG CGTGGACACGGTGCGCGGTTGCGCGGCTGA
Upstream 100 bases:
>100_bases GCTTCCTGCGCCAGTTCGCCTGACCCGCGGCGCGCCCATGGGCGGGCGCAGTGCCGCGCGCGCCGGGTATCGATCTAACC TGTTTCGAACGTAGACACTC
Downstream 100 bases:
>100_bases CACCACGCGAAGCTGGCCGGAACGCATCGGGTTCCGGCCTGTTTGTCCAGGGATAATGCGCAAGTTTTGCAGATATGAAC GACATGAACTCGAGTGAATT
Product: phenylalanyl-tRNA synthetase subunit beta
Products: NA
Alternate protein names: Phenylalanine--tRNA ligase beta chain; PheRS [H]
Number of amino acids: Translated: 809; Mature: 809
Protein sequence:
>809_residues MQFPESWLRTFVDPQLTTDELSHALTMAGLEVESLRPAAPPTSRIVVGRVLEVVKHPDADKLNVCQVDAGTGATLNIVCG APNVAPGIKVPVALVGAELPPAEEGGEPFRIRLSKLRGVESQGMLCSARELKLSDDHSGLMILPEDTPIGRDIREVLNLD DTIFEIKLTPNKADCLSVYGIARETAAITGAPLKAVAFAPVATELDETLPVRISAPDLCGRFSGRVIRGVNARAKTPQWM VERLERSGQRSVSALVDISNYVMFELGRPSHVFDLDKIHGAIDVRWGRRGETLKLLNGNTVELDETVGVIADEGQVESLA GIMGGDSTAVTLDTTNIYLEAAFWWPDSIRGRSRKYNFSTDAGHRFERGVDYSTTVEHLERITQLILEICGGQAGPVDDQ AVNLPTRAPVAMRVARANRIIGVAIGADEIAAIFTRLGLSFERDGDTFLVTPPPHRFDIEIEEDLIEEVARIHGFEKIPA RPPVATSEMRATNETQRSIHTIRHALAARDYAETVNFSFVDADWERDFAGNTRPVRLLNPIASQLSVMRTTLFGSLVNVL RHNLNRRADRVRAFETGRVFLADPTVAAGELTVEGYAQPKRVGALAYGPLLEEQWGAPTRQVDFFDVKGDLEALLAPAVA RFVKAEHPALHPGRSARIELDGRAVGWIGELHPRLMQQYELPHAPVMFEIDADALIARALPVPTDVSKFPPVRRDIAVVV DQGVEAQTLFDAMQGALADEACKFVQKIVLFDEFRAKSNTSGGLAMHEKSLAFRVVLQDDAGTLQDEVVERAIRALVDSL RGHGARLRG
Sequences:
>Translated_809_residues MQFPESWLRTFVDPQLTTDELSHALTMAGLEVESLRPAAPPTSRIVVGRVLEVVKHPDADKLNVCQVDAGTGATLNIVCG APNVAPGIKVPVALVGAELPPAEEGGEPFRIRLSKLRGVESQGMLCSARELKLSDDHSGLMILPEDTPIGRDIREVLNLD DTIFEIKLTPNKADCLSVYGIARETAAITGAPLKAVAFAPVATELDETLPVRISAPDLCGRFSGRVIRGVNARAKTPQWM VERLERSGQRSVSALVDISNYVMFELGRPSHVFDLDKIHGAIDVRWGRRGETLKLLNGNTVELDETVGVIADEGQVESLA GIMGGDSTAVTLDTTNIYLEAAFWWPDSIRGRSRKYNFSTDAGHRFERGVDYSTTVEHLERITQLILEICGGQAGPVDDQ AVNLPTRAPVAMRVARANRIIGVAIGADEIAAIFTRLGLSFERDGDTFLVTPPPHRFDIEIEEDLIEEVARIHGFEKIPA RPPVATSEMRATNETQRSIHTIRHALAARDYAETVNFSFVDADWERDFAGNTRPVRLLNPIASQLSVMRTTLFGSLVNVL RHNLNRRADRVRAFETGRVFLADPTVAAGELTVEGYAQPKRVGALAYGPLLEEQWGAPTRQVDFFDVKGDLEALLAPAVA RFVKAEHPALHPGRSARIELDGRAVGWIGELHPRLMQQYELPHAPVMFEIDADALIARALPVPTDVSKFPPVRRDIAVVV DQGVEAQTLFDAMQGALADEACKFVQKIVLFDEFRAKSNTSGGLAMHEKSLAFRVVLQDDAGTLQDEVVERAIRALVDSL RGHGARLRG >Mature_809_residues MQFPESWLRTFVDPQLTTDELSHALTMAGLEVESLRPAAPPTSRIVVGRVLEVVKHPDADKLNVCQVDAGTGATLNIVCG APNVAPGIKVPVALVGAELPPAEEGGEPFRIRLSKLRGVESQGMLCSARELKLSDDHSGLMILPEDTPIGRDIREVLNLD DTIFEIKLTPNKADCLSVYGIARETAAITGAPLKAVAFAPVATELDETLPVRISAPDLCGRFSGRVIRGVNARAKTPQWM VERLERSGQRSVSALVDISNYVMFELGRPSHVFDLDKIHGAIDVRWGRRGETLKLLNGNTVELDETVGVIADEGQVESLA GIMGGDSTAVTLDTTNIYLEAAFWWPDSIRGRSRKYNFSTDAGHRFERGVDYSTTVEHLERITQLILEICGGQAGPVDDQ AVNLPTRAPVAMRVARANRIIGVAIGADEIAAIFTRLGLSFERDGDTFLVTPPPHRFDIEIEEDLIEEVARIHGFEKIPA RPPVATSEMRATNETQRSIHTIRHALAARDYAETVNFSFVDADWERDFAGNTRPVRLLNPIASQLSVMRTTLFGSLVNVL RHNLNRRADRVRAFETGRVFLADPTVAAGELTVEGYAQPKRVGALAYGPLLEEQWGAPTRQVDFFDVKGDLEALLAPAVA RFVKAEHPALHPGRSARIELDGRAVGWIGELHPRLMQQYELPHAPVMFEIDADALIARALPVPTDVSKFPPVRRDIAVVV DQGVEAQTLFDAMQGALADEACKFVQKIVLFDEFRAKSNTSGGLAMHEKSLAFRVVLQDDAGTLQDEVVERAIRALVDSL RGHGARLRG
Specific function: Unknown
COG id: COG0072
COG function: function code J; Phenylalanyl-tRNA synthetase beta subunit
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 tRNA-binding domain [H]
Homologues:
Organism=Homo sapiens, GI124028525, Length=408, Percent_Identity=25.7352941176471, Blast_Score=87, Evalue=6e-17, Organism=Escherichia coli, GI1788006, Length=807, Percent_Identity=41.0161090458488, Blast_Score=606, Evalue=1e-174,
Paralogues:
None
Copy number: 1,800 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005146 - InterPro: IPR005147 - InterPro: IPR009061 - InterPro: IPR012340 - InterPro: IPR016027 - InterPro: IPR004532 - InterPro: IPR020825 - InterPro: IPR005121 - InterPro: IPR002547 [H]
Pfam domain/function: PF03483 B3_4; PF03484 B5; PF03147 FDX-ACB; PF01588 tRNA_bind [H]
EC number: =6.1.1.20 [H]
Molecular weight: Translated: 88543; Mature: 88543
Theoretical pI: Translated: 5.27; Mature: 5.27
Prosite motif: PS50886 TRBD
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQFPESWLRTFVDPQLTTDELSHALTMAGLEVESLRPAAPPTSRIVVGRVLEVVKHPDAD CCCCHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHCCCCC KLNVCQVDAGTGATLNIVCGAPNVAPGIKVPVALVGAELPPAEEGGEPFRIRLSKLRGVE CCEEEEEECCCCCEEEEEECCCCCCCCCCCCHHEECCCCCCCCCCCCCEEEEEHHHCCCC SQGMLCSARELKLSDDHSGLMILPEDTPIGRDIREVLNLDDTIFEIKLTPNKADCLSVYG CCCCEEECCCCEECCCCCCEEEEECCCCCCHHHHHHHCCCCEEEEEEECCCCHHHHHHHH IARETAAITGAPLKAVAFAPVATELDETLPVRISAPDLCGRFSGRVIRGVNARAKTPQWM HHHHHHHCCCCCHHHEEECHHHHHCCCCCCEEECCHHHHHHCCCCEEECCCCCCCCHHHH VERLERSGQRSVSALVDISNYVMFELGRPSHVFDLDKIHGAIDVRWGRRGETLKLLNGNT HHHHHHCCHHHHHHHHHHCCEEEEEECCCCCEEEHHHHCCEEEEEECCCCCEEEEECCCE VELDETVGVIADEGQVESLAGIMGGDSTAVTLDTTNIYLEAAFWWPDSIRGRSRKYNFST EEECCCCEEEECCCCHHHHHHHCCCCCEEEEEEECEEEEEEEEECCCCCCCCCCEECCCC DAGHRFERGVDYSTTVEHLERITQLILEICGGQAGPVDDQAVNLPTRAPVAMRVARANRI CCCCHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCCE IGVAIGADEIAAIFTRLGLSFERDGDTFLVTPPPHRFDIEIEEDLIEEVARIHGFEKIPA EEEEECHHHHHHHHHHHCCCEECCCCEEEECCCCCCEEEEEHHHHHHHHHHHCCCCCCCC RPPVATSEMRATNETQRSIHTIRHALAARDYAETVNFSFVDADWERDFAGNTRPVRLLNP CCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHH IASQLSVMRTTLFGSLVNVLRHNLNRRADRVRAFETGRVFLADPTVAAGELTVEGYAQPK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCEEEEECCCEECCEEEEECCCCCH RVGALAYGPLLEEQWGAPTRQVDFFDVKGDLEALLAPAVARFVKAEHPALHPGRSARIEL HHCEEHHCCCHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEE DGRAVGWIGELHPRLMQQYELPHAPVMFEIDADALIARALPVPTDVSKFPPVRRDIAVVV CCCEEECHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHCCCCCCHHHCCCCHHCCEEEE DQGVEAQTLFDAMQGALADEACKFVQKIVLFDEFRAKSNTSGGLAMHEKSLAFRVVLQDD CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCEEEEEEEECC AGTLQDEVVERAIRALVDSLRGHGARLRG CCCHHHHHHHHHHHHHHHHHCCCCCCCCC >Mature Secondary Structure MQFPESWLRTFVDPQLTTDELSHALTMAGLEVESLRPAAPPTSRIVVGRVLEVVKHPDAD CCCCHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHCCCCC KLNVCQVDAGTGATLNIVCGAPNVAPGIKVPVALVGAELPPAEEGGEPFRIRLSKLRGVE CCEEEEEECCCCCEEEEEECCCCCCCCCCCCHHEECCCCCCCCCCCCCEEEEEHHHCCCC SQGMLCSARELKLSDDHSGLMILPEDTPIGRDIREVLNLDDTIFEIKLTPNKADCLSVYG CCCCEEECCCCEECCCCCCEEEEECCCCCCHHHHHHHCCCCEEEEEEECCCCHHHHHHHH IARETAAITGAPLKAVAFAPVATELDETLPVRISAPDLCGRFSGRVIRGVNARAKTPQWM HHHHHHHCCCCCHHHEEECHHHHHCCCCCCEEECCHHHHHHCCCCEEECCCCCCCCHHHH VERLERSGQRSVSALVDISNYVMFELGRPSHVFDLDKIHGAIDVRWGRRGETLKLLNGNT HHHHHHCCHHHHHHHHHHCCEEEEEECCCCCEEEHHHHCCEEEEEECCCCCEEEEECCCE VELDETVGVIADEGQVESLAGIMGGDSTAVTLDTTNIYLEAAFWWPDSIRGRSRKYNFST EEECCCCEEEECCCCHHHHHHHCCCCCEEEEEEECEEEEEEEEECCCCCCCCCCEECCCC DAGHRFERGVDYSTTVEHLERITQLILEICGGQAGPVDDQAVNLPTRAPVAMRVARANRI CCCCHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCCE IGVAIGADEIAAIFTRLGLSFERDGDTFLVTPPPHRFDIEIEEDLIEEVARIHGFEKIPA EEEEECHHHHHHHHHHHCCCEECCCCEEEECCCCCCEEEEEHHHHHHHHHHHCCCCCCCC RPPVATSEMRATNETQRSIHTIRHALAARDYAETVNFSFVDADWERDFAGNTRPVRLLNP CCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHH IASQLSVMRTTLFGSLVNVLRHNLNRRADRVRAFETGRVFLADPTVAAGELTVEGYAQPK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCEEEEECCCEECCEEEEECCCCCH RVGALAYGPLLEEQWGAPTRQVDFFDVKGDLEALLAPAVARFVKAEHPALHPGRSARIEL HHCEEHHCCCHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEE DGRAVGWIGELHPRLMQQYELPHAPVMFEIDADALIARALPVPTDVSKFPPVRRDIAVVV CCCEEECHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHCCCCCCHHHCCCCHHCCEEEE DQGVEAQTLFDAMQGALADEACKFVQKIVLFDEFRAKSNTSGGLAMHEKSLAFRVVLQDD CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCEEEEEEEECC AGTLQDEVVERAIRALVDSLRGHGARLRG CCCHHHHHHHHHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA