| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
Click here to switch to the map view.
The map label for this gene is smeIM [H]
Identifier: 238027668
GI number: 238027668
Start: 2278804
End: 2279556
Strand: Reverse
Name: smeIM [H]
Synonym: bglu_1g20890
Alternate gene names: 238027668
Gene position: 2279556-2278804 (Counterclockwise)
Preceding gene: 238027669
Following gene: 238027667
Centisome position: 58.35
GC content: 63.35
Gene sequence:
>753_bases ATGAGCGACTGGCTTGACCGATGCCACTTCGGAGACTGCCGCGAGCTGCTGCCGATGATCCCGGCCGGCGTGGCTGATGC CGTCATTGCCGATCCGCCCTATGGCGACACTTCCCTGAAGTGGGATCGCGTGGTCGACGGCTGGATCGATGCATGCGCGC GAACCCTGAAACCAGCCGGATCGATTTGGGTATTCGGCAGTCTCCGGTTCATCGCGCCCACGTTCGAACTGATGGAGCGC GCCGGGTTCCGGTACTCGCAGGACATCGTGTGGCGCAAGCAGAACGGCACTGGCTTCCACAATGATCGCTTTCGGCGCGT CCACGAGCATGCGGTGCTGTTCTATCGCGGCGCTTGGTCCGACGTCTACAAGTGCCCGCAGGTCACGCACGACGCGCGCA AAAAACAGGTGCGCCGCAAGACTCGAGCAGCTCACTGGGGCGACATCGACCGCGGCCATTACACCAGCGTGGACGGCGGC CCGCGCCTGCGCACGAGCGTGATCGACATGAGGAATGAGCACGGCCATGCGCTTCACCCTACACAGAAACCCGTCGATCT GATCGAGCTGATGGTGCGCTACAGCGTGCCACCTGGCGGCATCGTGCTCGACCCTTTCCTCGGCAGCGGCAGTACAGCGC TCGCCGCCATCCGAAACGGCAGACACTGGATCGGCTGCGAGCTCGATCCGGATTGCCGCGATATGCAGGCGCAGCGGCTG CAGCAAAGCCCGCTGATCTTGGAAACGATATGA
Upstream 100 bases:
>100_bases GAGCCGGCGCCAGTACGGGCCGGTCTTTTTCCGGCTTCATCGAAAGCCGCGTGCATCGAGCCGCGCGCCCTTCGATGCAA CTGACCTACTGGATTTGACC
Downstream 100 bases:
>100_bases GCGCCTATTACAACGAGATTGACCCGTATGCGGCGCAGTGGCTTCGCAACCTGATCGCCGCCGGCCACATCGCGCCTGGC GACGTCGACGAACGGAGTAT
Product: DNA methylase N-4/N-6 domain-containing protein
Products: NA
Alternate protein names: M.SmeI; Adenine-specific methyltransferase SmeIP; M.CcrMI ortholog; Modification methylase SmeIP; M.SmeIP [H]
Number of amino acids: Translated: 250; Mature: 249
Protein sequence:
>250_residues MSDWLDRCHFGDCRELLPMIPAGVADAVIADPPYGDTSLKWDRVVDGWIDACARTLKPAGSIWVFGSLRFIAPTFELMER AGFRYSQDIVWRKQNGTGFHNDRFRRVHEHAVLFYRGAWSDVYKCPQVTHDARKKQVRRKTRAAHWGDIDRGHYTSVDGG PRLRTSVIDMRNEHGHALHPTQKPVDLIELMVRYSVPPGGIVLDPFLGSGSTALAAIRNGRHWIGCELDPDCRDMQAQRL QQSPLILETI
Sequences:
>Translated_250_residues MSDWLDRCHFGDCRELLPMIPAGVADAVIADPPYGDTSLKWDRVVDGWIDACARTLKPAGSIWVFGSLRFIAPTFELMER AGFRYSQDIVWRKQNGTGFHNDRFRRVHEHAVLFYRGAWSDVYKCPQVTHDARKKQVRRKTRAAHWGDIDRGHYTSVDGG PRLRTSVIDMRNEHGHALHPTQKPVDLIELMVRYSVPPGGIVLDPFLGSGSTALAAIRNGRHWIGCELDPDCRDMQAQRL QQSPLILETI >Mature_249_residues SDWLDRCHFGDCRELLPMIPAGVADAVIADPPYGDTSLKWDRVVDGWIDACARTLKPAGSIWVFGSLRFIAPTFELMERA GFRYSQDIVWRKQNGTGFHNDRFRRVHEHAVLFYRGAWSDVYKCPQVTHDARKKQVRRKTRAAHWGDIDRGHYTSVDGGP RLRTSVIDMRNEHGHALHPTQKPVDLIELMVRYSVPPGGIVLDPFLGSGSTALAAIRNGRHWIGCELDPDCRDMQAQRLQ QSPLILETI
Specific function: This methylase recognizes the double-stranded sequence GANTC and causes specific methylation on A-2 on both strands. Ccrm-mediated methylation has important cellular functions. Appears to contribute to the accurate cell-cycle control of DNA replication an
COG id: COG0863
COG function: function code L; DNA modification methylase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the N(4)/N(6)-methyltransferase family [H]
Homologues:
Organism=Escherichia coli, GI87082238, Length=251, Percent_Identity=27.8884462151394, Blast_Score=87, Evalue=8e-19,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002941 - InterPro: IPR002052 - InterPro: IPR001091 [H]
Pfam domain/function: PF01555 N6_N4_Mtase [H]
EC number: =2.1.1.72 [H]
Molecular weight: Translated: 28413; Mature: 28282
Theoretical pI: Translated: 8.39; Mature: 8.39
Prosite motif: PS00092 N6_MTASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.4 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 2.4 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDWLDRCHFGDCRELLPMIPAGVADAVIADPPYGDTSLKWDRVVDGWIDACARTLKPAG CCHHHHHCCCCCHHHHHHHCCCCHHHHEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC SIWVFGSLRFIAPTFELMERAGFRYSQDIVWRKQNGTGFHNDRFRRVHEHAVLFYRGAWS CEEEEECHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCHHHHHHHHHHEEEEEECCCH DVYKCPQVTHDARKKQVRRKTRAAHWGDIDRGHYTSVDGGPRLRTSVIDMRNEHGHALHP HHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCC TQKPVDLIELMVRYSVPPGGIVLDPFLGSGSTALAAIRNGRHWIGCELDPDCRDMQAQRL CCCHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHCCCEEEECCCCCCHHHHHHHHH QQSPLILETI HCCCCEEECC >Mature Secondary Structure SDWLDRCHFGDCRELLPMIPAGVADAVIADPPYGDTSLKWDRVVDGWIDACARTLKPAG CHHHHHCCCCCHHHHHHHCCCCHHHHEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC SIWVFGSLRFIAPTFELMERAGFRYSQDIVWRKQNGTGFHNDRFRRVHEHAVLFYRGAWS CEEEEECHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCHHHHHHHHHHEEEEEECCCH DVYKCPQVTHDARKKQVRRKTRAAHWGDIDRGHYTSVDGGPRLRTSVIDMRNEHGHALHP HHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCC TQKPVDLIELMVRYSVPPGGIVLDPFLGSGSTALAAIRNGRHWIGCELDPDCRDMQAQRL CCCHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHCCCEEEECCCCCCHHHHHHHHH QQSPLILETI HCCCCEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9294447; 11481430 [H]