Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
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Accession | NC_012724 |
Length | 3,906,507 |
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The map label for this gene is dam [C]
Identifier: 238027602
GI number: 238027602
Start: 2213575
End: 2214366
Strand: Reverse
Name: dam [C]
Synonym: bglu_1g20230
Alternate gene names: 238027602
Gene position: 2214366-2213575 (Counterclockwise)
Preceding gene: 238027603
Following gene: 238027600
Centisome position: 56.68
GC content: 63.13
Gene sequence:
>792_bases ATGGCTTTACCTATCATTCCCTGGATCGGCGGAAAGCGCCGTCTCGCGGATCAGCTCATACCGCGGTTTCCGCGTCACGA GTGCTATGTAGAGGTGTTTGCTGGCGGGGCCGCGTTGTACTTCATGCGGCCGCCCGCGAACGTTGAGATCATCAACGACG TCAACGGCGAGTTGGTGAACCTGTACCGGGTGGTCAAGGTCCACCCCGAGGAGTTCGTCCGGCAGTTCAGGTGGGCGCTG AGCAGTCGGGCGATGTTCGAGTGGCAGCAGAAGACGCCACCCGAGACGCTGACGGATATCCAGCGAGCGGCCAGGTTCTT CTACTTGCAGCAGCTGTGCTTCGGCGGCAAGGTGGAAGGGCAGACGTTCGGCACGTCCACAACGTCGCCGCCTGGGCTTA ACCTGTGGCGGATTGAGGAGACGCTGTCGTCTGCCCATCTCCGGCTGGCGGCGACCTGCATCGAGCAACTGGACTGGCGG GATTGCGTCGATCGGTACGATCGCGGCCACACGTTTTTCTACATGGACCCTCCGTATCTCGAGATGACGGGGTATGGCGT CCCGTTTCCCGTGAGCGAGTACGGGGCGGTCGCAGACCGCATGCGCGCCTTGAAGGGGAAGGCCATTCTCAGCGTGAACG ACCATCCCGAGACCCGCCGGATCTTCGACGGCTTCCATGTCGAGACGGTCGACATCGAGTACACGGTGAGCGGGGGCGGC CGCTCGGTGCCTCGGCGGGAGTTGATCGTCTTCAGCTGGGATGTGTCGGCGGAGCCGGCGGGGCTGTTCTAG
Upstream 100 bases:
>100_bases CGATGTGGCCACCCATCACTGAACGCGCCAGTGACAGGCCAAGGCCCTGCCACCCCCGGGGGGCGGGCCGATTGTAGCAA TAATCGGAGGTTTGTCACGG
Downstream 100 bases:
>100_bases ACCAAGGTGCCCGCCCGGCAGTGCGGGCATCACCAGTCGGCGGCCCTTGTCTCTTCCTGTAGAAGCAGTCTCAGTTGATA CATTGCGACGAGATGGCCGC
Product: DNA adenine methylase
Products: S-adenosyl-L-homocysteine; DNA methylaminopurine [C]
Alternate protein names: DNA Adenine Methylase; Adenine-Specific DNA Methyltransferase; Methyltransferase; Site-Specific DNA-Methyltransferase; Site-Specific DNA Methylase; N6 Adenine-Specific DNA Methyltransferase; Methylase; DNA Adenine Methylase Subfamily; Methylase LlaDCHIA; DNA Adenine Methyltransferase; Site-Specific DNA Adenine Methylase; N6 Adenine-Specific DNA Methyltransferase Protein; Phage DNA Adenine Methylase; Type II DNA Methyltransferase; Prophage; Adenine Specific DNA Methyltransferase; Phage Associated Type II DNA-Methyltransferase; Ype IIs Methyltransferase M.AlwI; Prophage DNA Adenine Methylase; DNA Adenine Methylase Prophage; Adenine-Specific DNA Methyltransferase; Site-Specific DNA-Methyltransferase Bacteriophage Origin; Phage Methylase; DNA Methyltransferase; Phage_related Methylase; Prophage DNA Methylase; LOW QUALITY PROTEIN DNA Adenine Methylase; Dam Methylase; N6 Adenine-Specific DNA-Methyltransferase; Phage-Related Methylase; Adenine-Specific Methyltransferase; DNA Methylase; Type IIs Methyltransferase; Phage DNA Methyltransferase; Site-Specific DNA Methylase Protein
Number of amino acids: Translated: 263; Mature: 262
Protein sequence:
>263_residues MALPIIPWIGGKRRLADQLIPRFPRHECYVEVFAGGAALYFMRPPANVEIINDVNGELVNLYRVVKVHPEEFVRQFRWAL SSRAMFEWQQKTPPETLTDIQRAARFFYLQQLCFGGKVEGQTFGTSTTSPPGLNLWRIEETLSSAHLRLAATCIEQLDWR DCVDRYDRGHTFFYMDPPYLEMTGYGVPFPVSEYGAVADRMRALKGKAILSVNDHPETRRIFDGFHVETVDIEYTVSGGG RSVPRRELIVFSWDVSAEPAGLF
Sequences:
>Translated_263_residues MALPIIPWIGGKRRLADQLIPRFPRHECYVEVFAGGAALYFMRPPANVEIINDVNGELVNLYRVVKVHPEEFVRQFRWAL SSRAMFEWQQKTPPETLTDIQRAARFFYLQQLCFGGKVEGQTFGTSTTSPPGLNLWRIEETLSSAHLRLAATCIEQLDWR DCVDRYDRGHTFFYMDPPYLEMTGYGVPFPVSEYGAVADRMRALKGKAILSVNDHPETRRIFDGFHVETVDIEYTVSGGG RSVPRRELIVFSWDVSAEPAGLF >Mature_262_residues ALPIIPWIGGKRRLADQLIPRFPRHECYVEVFAGGAALYFMRPPANVEIINDVNGELVNLYRVVKVHPEEFVRQFRWALS SRAMFEWQQKTPPETLTDIQRAARFFYLQQLCFGGKVEGQTFGTSTTSPPGLNLWRIEETLSSAHLRLAATCIEQLDWRD CVDRYDRGHTFFYMDPPYLEMTGYGVPFPVSEYGAVADRMRALKGKAILSVNDHPETRRIFDGFHVETVDIEYTVSGGGR SVPRRELIVFSWDVSAEPAGLF
Specific function: Methylates DNA Within The Sequence GATC And Protects The DNA From Cleavage By The Restriction Endonuclease Mboi. Although It Shares Sequence Specificity With A Number Of Type II Restriction Endonucleases And Methylases, It Is Thought To Act In Postreplica
COG id: COG0338
COG function: function code L; Site-specific DNA methylase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: 2.1.1.72 [C]
Molecular weight: Translated: 30070; Mature: 29938
Theoretical pI: Translated: 6.52; Mature: 6.52
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MALPIIPWIGGKRRLADQLIPRFPRHECYVEVFAGGAALYFMRPPANVEIINDVNGELVN CCCCCCCCCCCHHHHHHHHCCCCCCCCEEEEEEECCEEEEEECCCCCEEEEECCCCHHEE LYRVVKVHPEEFVRQFRWALSSRAMFEWQQKTPPETLTDIQRAARFFYLQQLCFGGKVEG HHHHEEECHHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC QTFGTSTTSPPGLNLWRIEETLSSAHLRLAATCIEQLDWRDCVDRYDRGHTFFYMDPPYL CCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCEEEEECCCEE EMTGYGVPFPVSEYGAVADRMRALKGKAILSVNDHPETRRIFDGFHVETVDIEYTVSGGG EEECCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHCCCEEEEEEEEEEECCCC RSVPRRELIVFSWDVSAEPAGLF CCCCCCEEEEEEECCCCCCCCCC >Mature Secondary Structure ALPIIPWIGGKRRLADQLIPRFPRHECYVEVFAGGAALYFMRPPANVEIINDVNGELVN CCCCCCCCCCHHHHHHHHCCCCCCCCEEEEEEECCEEEEEECCCCCEEEEECCCCHHEE LYRVVKVHPEEFVRQFRWALSSRAMFEWQQKTPPETLTDIQRAARFFYLQQLCFGGKVEG HHHHEEECHHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC QTFGTSTTSPPGLNLWRIEETLSSAHLRLAATCIEQLDWRDCVDRYDRGHTFFYMDPPYL CCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCEEEEECCCEE EMTGYGVPFPVSEYGAVADRMRALKGKAILSVNDHPETRRIFDGFHVETVDIEYTVSGGG EEECCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHCCCEEEEEEEEEEECCCC RSVPRRELIVFSWDVSAEPAGLF CCCCCCEEEEEEECCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: S-Adenosyl-L-methionine; DNA adenine; DNA [C]
Specific reaction: S-Adenosyl-L-methionine + DNA adenine =S-adenosyl-L-homocysteine + DNA methylaminopurine Protein + DNA = Protein-DNA [C]
General reaction: Methyl group transfer [C]
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA