Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
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Accession | NC_012724 |
Length | 3,906,507 |
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The map label for this gene is 238027598
Identifier: 238027598
GI number: 238027598
Start: 2207491
End: 2208693
Strand: Reverse
Name: 238027598
Synonym: bglu_1g20160
Alternate gene names: NA
Gene position: 2208693-2207491 (Counterclockwise)
Preceding gene: 238027600
Following gene: 238027597
Centisome position: 56.54
GC content: 64.26
Gene sequence:
>1203_bases ATGTCTGATCTTCGTCTTACCAAGCGGTTCGCGGTTGTGCTGGCAGTCGGTACGTTCGTGGCAGGGTGCAGTTCGCCGTC GCCCACGAAAATCGATTACAAGAGCGATTCCAAGAACAAGGAGGTATCGCTCGCGGTCCCGCCGAACATGATGGACGAGA CGGCCGATCAGCGGTCGCTGCCGCCGCAGGGCGGTGAAACGTCGCTGTCGAGTCTGCAGCAGACCCAGCGGGTCGCGCCG ACCACCGATACGGTCGTGCCGCCTACGCAGGGCATGCACCTGCAGCGCGACGGCACCGAAAGCTGGCTCGTGATCGACCA TCAGACGCCGGCCCAAGTCTGGCCGCAAGTGCGCCGCTTCTGGCAGGAACAGGGTTTCCTGCTCGTGGTCGACCAGCGCG ACAAGGGCGTGATGGAAACCGACTGGAACGAAACGCGTCCGTCGATCAACCAGGGCTTGATTCGCGGCGTGATCTCGAAG GCGATGGGCAATTCCTACGTCACGGCTGAGCGCAACAAGTACCGCACGCGCCTCGATACCGCGCCGAACGGCGGCACCTA CGTGTTCATCAGCCAGAAGGGGATGCGCGAGGCGCTCACCGGACCGAACAATGATTCGAGCAAGTGGGAAATGCGGCCGA ACGATCCGGGGCTCGAAACCGAATACCTGAAGCGGCTGATGGTCGTGCTTGCCCAGAACGACTCGCGCAAGGTGGCCGGC GGCGACAAGGCCGCTACGGCGCCGGCGCCGGCCTCGGCAGTGAAGCCGGCCGGCGGCGACGCGGCGGCAGCCGCGGTGGC AGCGCAGAACGTCACCAGTGTAGGCTCGCAAGGCCCGCGCAGCTCCAACGAAACGGCCGACGTGCCATCCGAAGTCATGC TCGGCGAGCCGTATGATCGCTCGTGGCTGCGCGTGGGGCTCGCGCTCGATCGTGCGAATTTCACGGTTGACGATCGCGAC CGCTCGAAGGGGCTCTACTACGTGCGCTACGTCGATCCGAAGGATCTGAGCTCGGCCGAGCAGGGGTTCTGGAGCCAGCT CTTCCACGGAAAGAAGGAAAAGACGGCGAAGCAATACCTCGTCAACGTGAAGGCGCTGACGCAGGATCAGACGCGCGTCG CGGTGGTCGATGCGAGCGGTAACATCGATATGTCCAGTCCCGCCCGCCAGATCATGGGGCTGCTCGCCGATCAGCTGCGC TGA
Upstream 100 bases:
>100_bases TGCGTGCGCTCTTTTTGCACTTGGCGGTGCGAGCCCGGTAAAATGCAATGTTGATCCACGGAAAAGTACCCGTGGCCACT CGCGGAAGGATTCCCTGAAC
Downstream 100 bases:
>100_bases CCACGCACCCGCGCTCCGGTTGCCAAGCCCGCCCGACGGCGGGCTTTTTCATTGGTGTCGTGGAAACGAGCGTGCGTTAC GTAACGTTACTTGGTAACGC
Product: putative lipoprotein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 400; Mature: 399
Protein sequence:
>400_residues MSDLRLTKRFAVVLAVGTFVAGCSSPSPTKIDYKSDSKNKEVSLAVPPNMMDETADQRSLPPQGGETSLSSLQQTQRVAP TTDTVVPPTQGMHLQRDGTESWLVIDHQTPAQVWPQVRRFWQEQGFLLVVDQRDKGVMETDWNETRPSINQGLIRGVISK AMGNSYVTAERNKYRTRLDTAPNGGTYVFISQKGMREALTGPNNDSSKWEMRPNDPGLETEYLKRLMVVLAQNDSRKVAG GDKAATAPAPASAVKPAGGDAAAAAVAAQNVTSVGSQGPRSSNETADVPSEVMLGEPYDRSWLRVGLALDRANFTVDDRD RSKGLYYVRYVDPKDLSSAEQGFWSQLFHGKKEKTAKQYLVNVKALTQDQTRVAVVDASGNIDMSSPARQIMGLLADQLR
Sequences:
>Translated_400_residues MSDLRLTKRFAVVLAVGTFVAGCSSPSPTKIDYKSDSKNKEVSLAVPPNMMDETADQRSLPPQGGETSLSSLQQTQRVAP TTDTVVPPTQGMHLQRDGTESWLVIDHQTPAQVWPQVRRFWQEQGFLLVVDQRDKGVMETDWNETRPSINQGLIRGVISK AMGNSYVTAERNKYRTRLDTAPNGGTYVFISQKGMREALTGPNNDSSKWEMRPNDPGLETEYLKRLMVVLAQNDSRKVAG GDKAATAPAPASAVKPAGGDAAAAAVAAQNVTSVGSQGPRSSNETADVPSEVMLGEPYDRSWLRVGLALDRANFTVDDRD RSKGLYYVRYVDPKDLSSAEQGFWSQLFHGKKEKTAKQYLVNVKALTQDQTRVAVVDASGNIDMSSPARQIMGLLADQLR >Mature_399_residues SDLRLTKRFAVVLAVGTFVAGCSSPSPTKIDYKSDSKNKEVSLAVPPNMMDETADQRSLPPQGGETSLSSLQQTQRVAPT TDTVVPPTQGMHLQRDGTESWLVIDHQTPAQVWPQVRRFWQEQGFLLVVDQRDKGVMETDWNETRPSINQGLIRGVISKA MGNSYVTAERNKYRTRLDTAPNGGTYVFISQKGMREALTGPNNDSSKWEMRPNDPGLETEYLKRLMVVLAQNDSRKVAGG DKAATAPAPASAVKPAGGDAAAAAVAAQNVTSVGSQGPRSSNETADVPSEVMLGEPYDRSWLRVGLALDRANFTVDDRDR SKGLYYVRYVDPKDLSSAEQGFWSQLFHGKKEKTAKQYLVNVKALTQDQTRVAVVDASGNIDMSSPARQIMGLLADQLR
Specific function: Unknown
COG id: COG3317
COG function: function code M; Uncharacterized lipoprotein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43778; Mature: 43646
Theoretical pI: Translated: 8.82; Mature: 8.82
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDLRLTKRFAVVLAVGTFVAGCSSPSPTKIDYKSDSKNKEVSLAVPPNMMDETADQRSL CCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCEEEEEECCCHHHHCHHHCCC PPQGGETSLSSLQQTQRVAPTTDTVVPPTQGMHLQRDGTESWLVIDHQTPAQVWPQVRRF CCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEEECCCHHHHHHHHHHH WQEQGFLLVVDQRDKGVMETDWNETRPSINQGLIRGVISKAMGNSYVTAERNKYRTRLDT HHHCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCHHHHHCCCC APNGGTYVFISQKGMREALTGPNNDSSKWEMRPNDPGLETEYLKRLMVVLAQNDSRKVAG CCCCCEEEEEECCCCHHHHCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHCCCCCEECC GDKAATAPAPASAVKPAGGDAAAAAVAAQNVTSVGSQGPRSSNETADVPSEVMLGEPYDR CCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCC SWLRVGLALDRANFTVDDRDRSKGLYYVRYVDPKDLSSAEQGFWSQLFHGKKEKTAKQYL CCEEEEEEEECCCCEECCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHCCCHHHHHHHHH VNVKALTQDQTRVAVVDASGNIDMSSPARQIMGLLADQLR HHHHHCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHCC >Mature Secondary Structure SDLRLTKRFAVVLAVGTFVAGCSSPSPTKIDYKSDSKNKEVSLAVPPNMMDETADQRSL CCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCEEEEEECCCHHHHCHHHCCC PPQGGETSLSSLQQTQRVAPTTDTVVPPTQGMHLQRDGTESWLVIDHQTPAQVWPQVRRF CCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEEECCCHHHHHHHHHHH WQEQGFLLVVDQRDKGVMETDWNETRPSINQGLIRGVISKAMGNSYVTAERNKYRTRLDT HHHCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCHHHHHCCCC APNGGTYVFISQKGMREALTGPNNDSSKWEMRPNDPGLETEYLKRLMVVLAQNDSRKVAG CCCCCEEEEEECCCCHHHHCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHCCCCCEECC GDKAATAPAPASAVKPAGGDAAAAAVAAQNVTSVGSQGPRSSNETADVPSEVMLGEPYDR CCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCC SWLRVGLALDRANFTVDDRDRSKGLYYVRYVDPKDLSSAEQGFWSQLFHGKKEKTAKQYL CCEEEEEEEECCCCEECCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHCCCHHHHHHHHH VNVKALTQDQTRVAVVDASGNIDMSSPARQIMGLLADQLR HHHHHCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10710307 [H]