Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
---|---|
Accession | NC_012724 |
Length | 3,906,507 |
Click here to switch to the map view.
The map label for this gene is 238027559
Identifier: 238027559
GI number: 238027559
Start: 2161910
End: 2162926
Strand: Reverse
Name: 238027559
Synonym: bglu_1g19770
Alternate gene names: NA
Gene position: 2162926-2161910 (Counterclockwise)
Preceding gene: 238027560
Following gene: 238027558
Centisome position: 55.37
GC content: 73.06
Gene sequence:
>1017_bases ATGTCTAGCGGCGTGCTGTGGGCGCTGTCGTTCGCGCTGCTGCTGGCCGCGGCCGGCGTGATGCTGTGGCGCGGCAGCCA GTTGCGCGAGCAGAGCGCCCATACGCGGCGCTTCTTCGACAGTCGCCTGGAGGCGGGCGCGAAGGGGGCCGTGCCGGCGG GCGCGGCAGGCGGCGCGGGTCGCACAGCCGCGCGCCAGGCGGCGCCGGCGGCGGGGCAGCCGGCCAGGCCGGCGAGCCGG CCGGCGGCGCCCGCGAAGGGGCTGGCGGCGTGGCGCGCCAAGGCCGAGGCGCGCTGGCTCGGCATCAGCGATCGCGCCGG CCTCGACGAGGTGCGGGGCTTGCTCTACGTGCTGGCGGGGCTGGTGTTGCTGGCCATGCTGGTGGCCGGCGCGCGCGGCG GCGGGGTGGCGGCCGGCGCGGCCCTGCTCGGCGGCGTGGCGCTCGCCTGCCTGTGGGTGCTGCGGCGGATCTCGGCGCGG CGCCTGAAGATCGTCCAGCAGCTGCCGTCGTTCCTCGACGGCGTGGTACGGCTGGTGACGCTCGGCAACAGCGTGCCGGC CGCGTTCCAGGGCGCGCTCGGCACCACCGAGATGCCGCTGCGCCGCTGCCTCGACCAGGTATCGAGAATGCTGCGCACCG GCGTGGAGATCGATCGCGCGATGCTGCACATCGCCAAGGAATACCGCGTTCGCGAGTTCGAGCTGGTGGGATCGGTGCTG CGCCTGTCGGTCAAGTACGGCGGCCGTGCCGACGTGATGCTGGAGCGCATGGCGACCTTCATGCGCGACCTCGAGCAGGC CGAGCGCGAACTGCACGCGATGTCGGCGGAGACGCGCCTGTCGGCCTGGGTGCTCGGCCTGCTGCCGGTCGCGGTCGGCA GCTTCGTGGTATCGACCAATCCGCAGTATTTCACGGCGATGTGGATGAACGAATCCGGGCGCCTGGTGCTGTACGTGGCC TTCGGCCTGCAGATGCTCGGCGGCTATCTGCTGTACCGGATGGCTCGGCTCAGGTAG
Upstream 100 bases:
>100_bases GGCATCCACCCGCATTCGCCCAAGCTCGCGCGGTTTCGCAATGAGCTGATCGGCAGCCTGGGCGGCGGCATGGACGGCTT CGGCTGCGGCGAGGGCTTCA
Downstream 100 bases:
>100_bases GGAGGCGCAATGGAGGCACATCAACTGGGCGCGCTGGCGCTGGCGTTGGGGGCGATCGGCGTGCTGCTGCTGGCCGGCCT GGCGATCGTGCGCGCCATGC
Product: Flp pilus assembly protein TadB
Products: NA
Alternate protein names: Flp Pilus Assembly Protein TadB; Pilus Assembly Protein; Secretion System Protein; Type II Secretion System; Type II Secretion System Protein F Domain; Type II Secretion System F Domain Protein; Type II Secretion System F Domain-Containing Protein; Tight Adherence TadB Related Transmembrane Protein; TadB Protein; Flp Type Pilus Assembly Protein; Flp Pilus Assembly Protein; Pilus Assembly Transmembrane Protein; Pilus Assembly Protein Tadb; Type II/IV Secretion System Membrane Protein; Type IV Pilus Assembly Protein
Number of amino acids: Translated: 338; Mature: 337
Protein sequence:
>338_residues MSSGVLWALSFALLLAAAGVMLWRGSQLREQSAHTRRFFDSRLEAGAKGAVPAGAAGGAGRTAARQAAPAAGQPARPASR PAAPAKGLAAWRAKAEARWLGISDRAGLDEVRGLLYVLAGLVLLAMLVAGARGGGVAAGAALLGGVALACLWVLRRISAR RLKIVQQLPSFLDGVVRLVTLGNSVPAAFQGALGTTEMPLRRCLDQVSRMLRTGVEIDRAMLHIAKEYRVREFELVGSVL RLSVKYGGRADVMLERMATFMRDLEQAERELHAMSAETRLSAWVLGLLPVAVGSFVVSTNPQYFTAMWMNESGRLVLYVA FGLQMLGGYLLYRMARLR
Sequences:
>Translated_338_residues MSSGVLWALSFALLLAAAGVMLWRGSQLREQSAHTRRFFDSRLEAGAKGAVPAGAAGGAGRTAARQAAPAAGQPARPASR PAAPAKGLAAWRAKAEARWLGISDRAGLDEVRGLLYVLAGLVLLAMLVAGARGGGVAAGAALLGGVALACLWVLRRISAR RLKIVQQLPSFLDGVVRLVTLGNSVPAAFQGALGTTEMPLRRCLDQVSRMLRTGVEIDRAMLHIAKEYRVREFELVGSVL RLSVKYGGRADVMLERMATFMRDLEQAERELHAMSAETRLSAWVLGLLPVAVGSFVVSTNPQYFTAMWMNESGRLVLYVA FGLQMLGGYLLYRMARLR >Mature_337_residues SSGVLWALSFALLLAAAGVMLWRGSQLREQSAHTRRFFDSRLEAGAKGAVPAGAAGGAGRTAARQAAPAAGQPARPASRP AAPAKGLAAWRAKAEARWLGISDRAGLDEVRGLLYVLAGLVLLAMLVAGARGGGVAAGAALLGGVALACLWVLRRISARR LKIVQQLPSFLDGVVRLVTLGNSVPAAFQGALGTTEMPLRRCLDQVSRMLRTGVEIDRAMLHIAKEYRVREFELVGSVLR LSVKYGGRADVMLERMATFMRDLEQAERELHAMSAETRLSAWVLGLLPVAVGSFVVSTNPQYFTAMWMNESGRLVLYVAF GLQMLGGYLLYRMARLR
Specific function: Unknown
COG id: COG4965
COG function: function code U; Flp pilus assembly protein TadB
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 36258; Mature: 36127
Theoretical pI: Translated: 11.60; Mature: 11.60
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 4.1 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 3.9 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSGVLWALSFALLLAAAGVMLWRGSQLREQSAHTRRFFDSRLEAGAKGAVPAGAAGGAG CCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC RTAARQAAPAAGQPARPASRPAAPAKGLAAWRAKAEARWLGISDRAGLDEVRGLLYVLAG CHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHH LVLLAMLVAGARGGGVAAGAALLGGVALACLWVLRRISARRLKIVQQLPSFLDGVVRLVT HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LGNSVPAAFQGALGTTEMPLRRCLDQVSRMLRTGVEIDRAMLHIAKEYRVREFELVGSVL CCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH RLSVKYGGRADVMLERMATFMRDLEQAERELHAMSAETRLSAWVLGLLPVAVGSFVVSTN HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECC PQYFTAMWMNESGRLVLYVAFGLQMLGGYLLYRMARLR CCEEEEEEECCCCCEEEEHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure SSGVLWALSFALLLAAAGVMLWRGSQLREQSAHTRRFFDSRLEAGAKGAVPAGAAGGAG CCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC RTAARQAAPAAGQPARPASRPAAPAKGLAAWRAKAEARWLGISDRAGLDEVRGLLYVLAG CHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHH LVLLAMLVAGARGGGVAAGAALLGGVALACLWVLRRISARRLKIVQQLPSFLDGVVRLVT HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LGNSVPAAFQGALGTTEMPLRRCLDQVSRMLRTGVEIDRAMLHIAKEYRVREFELVGSVL CCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH RLSVKYGGRADVMLERMATFMRDLEQAERELHAMSAETRLSAWVLGLLPVAVGSFVVSTN HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECC PQYFTAMWMNESGRLVLYVAFGLQMLGGYLLYRMARLR CCEEEEEEECCCCCEEEEHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA