| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is yeaH [C]
Identifier: 238027459
GI number: 238027459
Start: 2041928
End: 2043193
Strand: Reverse
Name: yeaH [C]
Synonym: bglu_1g18620
Alternate gene names: 238027459
Gene position: 2043193-2041928 (Counterclockwise)
Preceding gene: 238027460
Following gene: 238027458
Centisome position: 52.3
GC content: 64.53
Gene sequence:
>1266_bases GTGCTTCATCAAATCATCGACCGCAGGCTGGCCGGCAAGAACAAGAGCATTGCAAACCGCGAGCGCTTTCTGCGTCGCGT CAAGAACTACATTCGCCGGGCGGTGTCCGATGCCGTCCGCGACCGTAGCATCAAGGACATCCAAAGCACCCAGAGCATCA CCATTCCACGCAAGGACATCGCGGAGCCCACGTTCCGCCATGCCTCCGGCGGGCGGCGCGAGCACGTGCATCCCGGCAAT TCCGACTACATTCGCGGCGACAAGATCCCGCGCCCGCCGGGCGGCTCCGGCGGGGGCGGCAGCCAGGCCAGCAACGAGGG CGAGGGGCAGGACGACTTCGTGTTCGAGCTGAGCCGCGAGGAATTCATGCAGTATTTCTTCGACGACCTGGAACTGCCGC GGCTCGTGCAGACGCATCTGCTGGCGGTGCCGAGCTGGAAGAACGTGCGCGCGGGCTGGGCGGCGGAAGGCACGCCGAAC AACATCGACGTGGTGCGCTCGCTGCGCAGCGCGCTGGGCCGGCGCATCGCGCTCGGCTCGCCGCTCGTGGCCGAGCTGCG CGGGCTGGAGGCACGGCTCGAGGCGCTGCAAGACGACCCCGGCGACCACCGCGTCGAGATCGCCGAGCTCGAGGCGCAGA TCCATCACCTGAAAGGGCGCATCTGGCGGATTCCGTTCATCGATCCGTTCGACCTGCGCTACGTGAACCGCGTGAAGCAG CCGCAACCGTCGAGCCAGGCCGTGATGTTCTGCCTGATGGACGTGTCGGGCTCGATGGACGAGCAGCGCAAGGATCTCGC CAAGCGTTTCTTCATCCTGCTCTACCTGTTCCTGAAGCGAAACTACGAGCGCATCGAGGTGGTGTTCATCCGCCATCACA CGCGCGCCGAGGAAGTCGACGAGGACACCTTCTTCCATTCCACCGAGAGCGGCGGCACGGTCGTGTCGAGCGCGCTCGAA CTGATGCGCAAGGTGATGAACGAGCGCTACTCGCCGACCGAATGGAACATCTACGGCGCGCAGGCCTCGGACGGCGACAA CTGGACCGACGACTCGCCGAAGTGCCGCAAGATCCTGCAGGAGGACATCCTCACCAAGACGCGTTACTTCGCCTATATCC AGGTGGCGCCGGAAGAGCAGAATCTGTGGCTCGAATACGCGCAGCTCGCGCTGTCGCAGCCGCACATGGCGATGAAGAAG GCCGAGTCGGCCGCGGACATCTACCCGGTGTTCCGCGAGCTGTTCGAAAAACACGTGGAAACCTGA
Upstream 100 bases:
>100_bases CGTCCGCGCGGCCTGGCCGCGCGGGCACCCTGAGCGACGCGCCGCACGGTGGATCGTGCGGCACGTCCCGGCGTATCGAC TTTCGAGCGGGAGACCGGGA
Downstream 100 bases:
>100_bases TGGCATGACGACACGCCACCCGGACAACGCGGCGCGCGGCTGGCAGGCGCGCCACACGGGCGACGACGCGCCCGGCCCCG GCACCGATCGAGCCGGCGCC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 421; Mature: 421
Protein sequence:
>421_residues MLHQIIDRRLAGKNKSIANRERFLRRVKNYIRRAVSDAVRDRSIKDIQSTQSITIPRKDIAEPTFRHASGGRREHVHPGN SDYIRGDKIPRPPGGSGGGGSQASNEGEGQDDFVFELSREEFMQYFFDDLELPRLVQTHLLAVPSWKNVRAGWAAEGTPN NIDVVRSLRSALGRRIALGSPLVAELRGLEARLEALQDDPGDHRVEIAELEAQIHHLKGRIWRIPFIDPFDLRYVNRVKQ PQPSSQAVMFCLMDVSGSMDEQRKDLAKRFFILLYLFLKRNYERIEVVFIRHHTRAEEVDEDTFFHSTESGGTVVSSALE LMRKVMNERYSPTEWNIYGAQASDGDNWTDDSPKCRKILQEDILTKTRYFAYIQVAPEEQNLWLEYAQLALSQPHMAMKK AESAADIYPVFRELFEKHVET
Sequences:
>Translated_421_residues MLHQIIDRRLAGKNKSIANRERFLRRVKNYIRRAVSDAVRDRSIKDIQSTQSITIPRKDIAEPTFRHASGGRREHVHPGN SDYIRGDKIPRPPGGSGGGGSQASNEGEGQDDFVFELSREEFMQYFFDDLELPRLVQTHLLAVPSWKNVRAGWAAEGTPN NIDVVRSLRSALGRRIALGSPLVAELRGLEARLEALQDDPGDHRVEIAELEAQIHHLKGRIWRIPFIDPFDLRYVNRVKQ PQPSSQAVMFCLMDVSGSMDEQRKDLAKRFFILLYLFLKRNYERIEVVFIRHHTRAEEVDEDTFFHSTESGGTVVSSALE LMRKVMNERYSPTEWNIYGAQASDGDNWTDDSPKCRKILQEDILTKTRYFAYIQVAPEEQNLWLEYAQLALSQPHMAMKK AESAADIYPVFRELFEKHVET >Mature_421_residues MLHQIIDRRLAGKNKSIANRERFLRRVKNYIRRAVSDAVRDRSIKDIQSTQSITIPRKDIAEPTFRHASGGRREHVHPGN SDYIRGDKIPRPPGGSGGGGSQASNEGEGQDDFVFELSREEFMQYFFDDLELPRLVQTHLLAVPSWKNVRAGWAAEGTPN NIDVVRSLRSALGRRIALGSPLVAELRGLEARLEALQDDPGDHRVEIAELEAQIHHLKGRIWRIPFIDPFDLRYVNRVKQ PQPSSQAVMFCLMDVSGSMDEQRKDLAKRFFILLYLFLKRNYERIEVVFIRHHTRAEEVDEDTFFHSTESGGTVVSSALE LMRKVMNERYSPTEWNIYGAQASDGDNWTDDSPKCRKILQEDILTKTRYFAYIQVAPEEQNLWLEYAQLALSQPHMAMKK AESAADIYPVFRELFEKHVET
Specific function: Unknown
COG id: COG2718
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0229 family [H]
Homologues:
Organism=Escherichia coli, GI1788084, Length=421, Percent_Identity=52.0190023752969, Blast_Score=437, Evalue=1e-124,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006698 [H]
Pfam domain/function: PF04285 DUF444 [H]
EC number: NA
Molecular weight: Translated: 48421; Mature: 48421
Theoretical pI: Translated: 7.21; Mature: 7.21
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLHQIIDRRLAGKNKSIANRERFLRRVKNYIRRAVSDAVRDRSIKDIQSTQSITIPRKDI CHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCHHHH AEPTFRHASGGRREHVHPGNSDYIRGDKIPRPPGGSGGGGSQASNEGEGQDDFVFELSRE CCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHEEHHHH EFMQYFFDDLELPRLVQTHLLAVPSWKNVRAGWAAEGTPNNIDVVRSLRSALGRRIALGS HHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCC PLVAELRGLEARLEALQDDPGDHRVEIAELEAQIHHLKGRIWRIPFIDPFDLRYVNRVKQ CHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHCC PQPSSQAVMFCLMDVSGSMDEQRKDLAKRFFILLYLFLKRNYERIEVVFIRHHTRAEEVD CCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCHHHCC EDTFFHSTESGGTVVSSALELMRKVMNERYSPTEWNIYGAQASDGDNWTDDSPKCRKILQ CHHHEECCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHH EDILTKTRYFAYIQVAPEEQNLWLEYAQLALSQPHMAMKKAESAADIYPVFRELFEKHVE HHHHHHHEEEEEEEECCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCC T C >Mature Secondary Structure MLHQIIDRRLAGKNKSIANRERFLRRVKNYIRRAVSDAVRDRSIKDIQSTQSITIPRKDI CHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCHHHH AEPTFRHASGGRREHVHPGNSDYIRGDKIPRPPGGSGGGGSQASNEGEGQDDFVFELSRE CCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHEEHHHH EFMQYFFDDLELPRLVQTHLLAVPSWKNVRAGWAAEGTPNNIDVVRSLRSALGRRIALGS HHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCC PLVAELRGLEARLEALQDDPGDHRVEIAELEAQIHHLKGRIWRIPFIDPFDLRYVNRVKQ CHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHCC PQPSSQAVMFCLMDVSGSMDEQRKDLAKRFFILLYLFLKRNYERIEVVFIRHHTRAEEVD CCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCHHHCC EDTFFHSTESGGTVVSSALELMRKVMNERYSPTEWNIYGAQASDGDNWTDDSPKCRKILQ CHHHEECCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHH EDILTKTRYFAYIQVAPEEQNLWLEYAQLALSQPHMAMKKAESAADIYPVFRELFEKHVE HHHHHHHEEEEEEEECCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCC T C
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA