BacMap

Definition	Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence.
Accession	NC_012724
Length	3,906,507

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The map label for this gene is ybbL [H]

Identifier: 238027215

GI number: 238027215

Start: 1751032

End: 1751772

Strand: Reverse

Name: ybbL [H]

Synonym: bglu_1g16010

Alternate gene names: 238027215

Gene position: 1751772-1751032 (Counterclockwise)

Preceding gene: 238027220

Following gene: 238027214

Centisome position: 44.84

GC content: 75.71

Gene sequence:

>741_bases
ATGACAGCAGCCCGCCTGATCGAAGCCCGCGGCCTGACCCGCCGCGACCCAGTCTCCAGGCGGCTGCTGGTCGCGCCGAC
CGACTTCAGCGTGCTGCCGGGCATGCGCATTGCTGTCACCGGCCCGTCCGGTTCGGGCAAGAGCGTGCTGCTGCGCGCGC
TGGCGCTGCTCGACCCGCTCGACGGCGGCACGCTGCACTGGCGCGGCGCAGCCGTTGCGCGCGCATCGATCACGCGCTAC
CGGCGCAGCGTCGCCTACCTGCGGCAGCGGCCCGCCACCGCCGACGGCACCGTGGAGGATATCCTGCGCTACCCGTATTC
GCTGGCCGTGTACCGCGACCTGCGCTTCGATCGCGACCGCGCCGTGACGCTCGCGCGGCAGGCGGGCCGCGCCGACGGCT
TCCTCGATCAGGACGCGCGCGAACTGTCGGGCGGCGAGGCGCAGATCGCGGCGCTGCTGCGCGTGCTGCTGCTCGACCCC
GAGGTGCTGCTGCTCGACGAGCCGACTTCGGCGCTCGATCCCGAAGCGGTGCAGGCGATCGAGGCGCTGGTGCAGGCGTG
GTTCGCCGCGGCGCCCGAGGCGCGCGCGTATCTGTGGGTCTCGCACGACCCCGCGCAGGCGGCGCGGATCGCCTCGCGCC
GCGTCACGATGCGCGCCGGCGTGCTCGGCGAAGCGGAGGCCGACGGCGGCACGGCGGCGGCGCGCGAGGCGCGCGACCGC
GCCGGCGGGGCGGCCCGATGA

Upstream 100 bases:

>100_bases
TTGACCGAAGCGAAGGCCGCGCCGAACCCGCCGCAACCGAGTGTCGGTATTATGGCACCGCGCGCGAGCTCTCCTCCCCC
ATTTACCCTTTATTGCATTT

Downstream 100 bases:

>100_bases
GCCCGGTGCTGCAGGATCTGAGCCTCGGCGACGTCGCGCTCGCGGCCGCGCTGGTGGCCGTCAACGGGGCGCTCTCGTGC
GCCCTCTCGCTGGGCCTTGG

Product: ABC transporter ATP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 246; Mature: 245

Protein sequence:

>246_residues
MTAARLIEARGLTRRDPVSRRLLVAPTDFSVLPGMRIAVTGPSGSGKSVLLRALALLDPLDGGTLHWRGAAVARASITRY
RRSVAYLRQRPATADGTVEDILRYPYSLAVYRDLRFDRDRAVTLARQAGRADGFLDQDARELSGGEAQIAALLRVLLLDP
EVLLLDEPTSALDPEAVQAIEALVQAWFAAAPEARAYLWVSHDPAQAARIASRRVTMRAGVLGEAEADGGTAAAREARDR
AGGAAR

Sequences:

>Translated_246_residues
MTAARLIEARGLTRRDPVSRRLLVAPTDFSVLPGMRIAVTGPSGSGKSVLLRALALLDPLDGGTLHWRGAAVARASITRY
RRSVAYLRQRPATADGTVEDILRYPYSLAVYRDLRFDRDRAVTLARQAGRADGFLDQDARELSGGEAQIAALLRVLLLDP
EVLLLDEPTSALDPEAVQAIEALVQAWFAAAPEARAYLWVSHDPAQAARIASRRVTMRAGVLGEAEADGGTAAAREARDR
AGGAAR
>Mature_245_residues
TAARLIEARGLTRRDPVSRRLLVAPTDFSVLPGMRIAVTGPSGSGKSVLLRALALLDPLDGGTLHWRGAAVARASITRYR
RSVAYLRQRPATADGTVEDILRYPYSLAVYRDLRFDRDRAVTLARQAGRADGFLDQDARELSGGEAQIAALLRVLLLDPE
VLLLDEPTSALDPEAVQAIEALVQAWFAAAPEARAYLWVSHDPAQAARIASRRVTMRAGVLGEAEADGGTAAAREARDRA
GGAAR

Specific function: Unknown

COG id: COG4619

COG function: function code R; ABC-type uncharacterized transport system, ATPase component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI9955968, Length=237, Percent_Identity=27.0042194092827, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI9955966, Length=237, Percent_Identity=27.0042194092827, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI45243524, Length=237, Percent_Identity=27.0042194092827, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI255708477, Length=220, Percent_Identity=28.6363636363636, Blast_Score=71, Evalue=8e-13,
Organism=Homo sapiens, GI9955963, Length=166, Percent_Identity=30.7228915662651, Blast_Score=71, Evalue=9e-13,
Organism=Homo sapiens, GI9961250, Length=178, Percent_Identity=28.0898876404494, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI4505771, Length=178, Percent_Identity=28.0898876404494, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI9961252, Length=178, Percent_Identity=28.0898876404494, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI21536378, Length=183, Percent_Identity=27.8688524590164, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI42490749, Length=168, Percent_Identity=29.7619047619048, Blast_Score=65, Evalue=6e-11,
Organism=Homo sapiens, GI42741659, Length=183, Percent_Identity=27.8688524590164, Blast_Score=65, Evalue=8e-11,
Organism=Escherichia coli, GI1786698, Length=205, Percent_Identity=33.6585365853659, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI1788225, Length=227, Percent_Identity=29.9559471365639, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1789672, Length=224, Percent_Identity=29.0178571428571, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1786872, Length=199, Percent_Identity=31.1557788944724, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1787029, Length=212, Percent_Identity=29.7169811320755, Blast_Score=78, Evalue=4e-16,
Organism=Escherichia coli, GI1787089, Length=216, Percent_Identity=31.9444444444444, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1788761, Length=203, Percent_Identity=30.5418719211823, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI87081709, Length=228, Percent_Identity=28.5087719298246, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1789891, Length=206, Percent_Identity=30.0970873786408, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI1786803, Length=196, Percent_Identity=33.1632653061224, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1789962, Length=230, Percent_Identity=28.2608695652174, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1786253, Length=201, Percent_Identity=34.8258706467662, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1790162, Length=209, Percent_Identity=30.1435406698565, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1786345, Length=210, Percent_Identity=31.9047619047619, Blast_Score=67, Evalue=9e-13,
Organism=Escherichia coli, GI87082267, Length=212, Percent_Identity=28.7735849056604, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI87081834, Length=200, Percent_Identity=31, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1789032, Length=228, Percent_Identity=30.2631578947368, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI145693107, Length=241, Percent_Identity=31.5352697095436, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1790739, Length=194, Percent_Identity=30.4123711340206, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI2367384, Length=203, Percent_Identity=30.0492610837438, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1788450, Length=194, Percent_Identity=30.4123711340206, Blast_Score=62, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI193211015, Length=200, Percent_Identity=32, Blast_Score=81, Evalue=5e-16,
Organism=Caenorhabditis elegans, GI71996809, Length=200, Percent_Identity=32, Blast_Score=81, Evalue=5e-16,
Organism=Caenorhabditis elegans, GI193211017, Length=200, Percent_Identity=32, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17567265, Length=184, Percent_Identity=30.4347826086957, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17565938, Length=198, Percent_Identity=28.7878787878788, Blast_Score=78, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI115535101, Length=194, Percent_Identity=32.9896907216495, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17569143, Length=199, Percent_Identity=29.6482412060301, Blast_Score=75, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI212646699, Length=199, Percent_Identity=29.1457286432161, Blast_Score=74, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI25146777, Length=181, Percent_Identity=30.939226519337, Blast_Score=74, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI17567269, Length=211, Percent_Identity=28.9099526066351, Blast_Score=74, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI17533971, Length=178, Percent_Identity=29.2134831460674, Blast_Score=74, Evalue=7e-14,
Organism=Caenorhabditis elegans, GI17558664, Length=199, Percent_Identity=29.1457286432161, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17541710, Length=184, Percent_Identity=31.5217391304348, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI193202349, Length=173, Percent_Identity=31.7919075144509, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI71992290, Length=202, Percent_Identity=28.2178217821782, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17569145, Length=199, Percent_Identity=29.1457286432161, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17543740, Length=183, Percent_Identity=25.1366120218579, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI71984940, Length=209, Percent_Identity=25.8373205741627, Blast_Score=65, Evalue=3e-11,
Organism=Saccharomyces cerevisiae, GI6323217, Length=164, Percent_Identity=33.5365853658537, Blast_Score=80, Evalue=3e-16,
Organism=Saccharomyces cerevisiae, GI6322640, Length=177, Percent_Identity=28.8135593220339, Blast_Score=69, Evalue=6e-13,
Organism=Saccharomyces cerevisiae, GI6324985, Length=162, Percent_Identity=29.0123456790123, Blast_Score=67, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24659289, Length=221, Percent_Identity=32.1266968325792, Blast_Score=74, Evalue=9e-14,
Organism=Drosophila melanogaster, GI85726357, Length=186, Percent_Identity=30.1075268817204, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI281363262, Length=199, Percent_Identity=30.1507537688442, Blast_Score=68, Evalue=7e-12,
Organism=Drosophila melanogaster, GI24653245, Length=199, Percent_Identity=30.1507537688442, Blast_Score=67, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 26446; Mature: 26315

Theoretical pI: Translated: 10.04; Mature: 10.04

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAARLIEARGLTRRDPVSRRLLVAPTDFSVLPGMRIAVTGPSGSGKSVLLRALALLDPL
CCHHHHHHHCCCCCCCCCCCEEEECCCCCHHCCCCEEEEECCCCCCHHHHHHHHHHHCCC
DGGTLHWRGAAVARASITRYRRSVAYLRQRPATADGTVEDILRYPYSLAVYRDLRFDRDR
CCCEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCHHHHHHHHHCCCCHH
AVTLARQAGRADGFLDQDARELSGGEAQIAALLRVLLLDPEVLLLDEPTSALDPEAVQAI
HHHHHHHCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHH
EALVQAWFAAAPEARAYLWVSHDPAQAARIASRRVTMRAGVLGEAEADGGTAAAREARDR
HHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
AGGAAR
CCCCCC
>Mature Secondary Structure 
TAARLIEARGLTRRDPVSRRLLVAPTDFSVLPGMRIAVTGPSGSGKSVLLRALALLDPL
CHHHHHHHCCCCCCCCCCCEEEECCCCCHHCCCCEEEEECCCCCCHHHHHHHHHHHCCC
DGGTLHWRGAAVARASITRYRRSVAYLRQRPATADGTVEDILRYPYSLAVYRDLRFDRDR
CCCEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCHHHHHHHHHCCCCHH
AVTLARQAGRADGFLDQDARELSGGEAQIAALLRVLLLDPEVLLLDEPTSALDPEAVQAI
HHHHHHHCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHH
EALVQAWFAAAPEARAYLWVSHDPAQAARIASRRVTMRAGVLGEAEADGGTAAAREARDR
HHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
AGGAAR
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]