| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is yghA [H]
Identifier: 238027127
GI number: 238027127
Start: 1668596
End: 1669498
Strand: Reverse
Name: yghA [H]
Synonym: bglu_1g15070
Alternate gene names: 238027127
Gene position: 1669498-1668596 (Counterclockwise)
Preceding gene: 238027128
Following gene: 238027126
Centisome position: 42.74
GC content: 70.65
Gene sequence:
>903_bases ATGCCCGGTGAATTCGATCAAACCACGATGCGTGACCCGCTCACGCAATACCCGCGTCCCGACTTCGACAAGCAGCCCCA GCCCGCTCCGGGCCTGGCCGGCCAGATGCGCCCGCGCCCCGACCACGGCGAAACCTCCTATCGCGGCATGGGCCGCCTGA GCGGCCGGCGCGCGCTGATCACCGGCGCCGACAGCGGCATCGGCCGCGCCGTGGCGATCGCCTTCGCACGCGAAGGCGCC AATCTCGCCCTGAACTATTTACACAGCGAGCAAGCCGATGCCCGCGAGGTGCTCGCCCTCGTCGAGGACGCCGGCCGCCA GGCACTCGCGCTGCCCGGCGACATCGCCGACGAATCGTTCTGCCAGCAGCTCGTCGCCGACGCCGTCGAGGGCCTCGGCG GCCTCGACATCCTCGTCAACGTCGCCGGCAAGCAGGTCTACGTCGAGCAGATCGCCGAGCTCACCACCGCGCAGCTGGAA GCCACCTTCCGCACCAACGTGTTCGCCATGTTCTGGCTTTGCAAGGCCGCGCTGCCGCACCTGCCGCCCGGCGCCAGCAT CATCAACACCACCTCGATCCAGAGCTACCAGCCCAGCCCCGGCCTGCTCGACTACGCCGCCACCAAGGCCGCCATCACCG CCTTCACCCACGCCTTCGCCAAGCAGGTGGCCGGCCGCGGCGTGCGCGTGAACGCCGTGGCGCCCGGGCCGGTCTGGACG CCCCTGCAGCCCAGCGGCGGCCAGCCCCAGGAAAAGGTCGAGGTGTTCGGCTCCGAGACGCCGATGAAGCGCCCCGGCCA GCCGGCCGAACTCGCGCCCGTCTACGTGCTGCTGGCCTCCCAGGAGTCCAGCTTCGTCACCGGCGAGATCTACGGCGTCA CGGGCGGCCACCACCTGCCATGA
Upstream 100 bases:
>100_bases GGCGCATCGCCGAGCCGGCGCGCGCGGCACGGCGCTTGCTGAAAACGGGGATCCGCGGGCCTGCAGGCCCGTCGTCCCAT CCACGAAAAGGAGCTCCCCC
Downstream 100 bases:
>100_bases GGCGAACCGCCACCGAAGGTCGCCTGCTCGTCGTCTCTCCGCATCTGGACGACGCCGTGCTCAGTTGCGGCCACGTGCTG GCGCGGCATCCCGGCGCGAC
Product: oxidoreductase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 300; Mature: 299
Protein sequence:
>300_residues MPGEFDQTTMRDPLTQYPRPDFDKQPQPAPGLAGQMRPRPDHGETSYRGMGRLSGRRALITGADSGIGRAVAIAFAREGA NLALNYLHSEQADAREVLALVEDAGRQALALPGDIADESFCQQLVADAVEGLGGLDILVNVAGKQVYVEQIAELTTAQLE ATFRTNVFAMFWLCKAALPHLPPGASIINTTSIQSYQPSPGLLDYAATKAAITAFTHAFAKQVAGRGVRVNAVAPGPVWT PLQPSGGQPQEKVEVFGSETPMKRPGQPAELAPVYVLLASQESSFVTGEIYGVTGGHHLP
Sequences:
>Translated_300_residues MPGEFDQTTMRDPLTQYPRPDFDKQPQPAPGLAGQMRPRPDHGETSYRGMGRLSGRRALITGADSGIGRAVAIAFAREGA NLALNYLHSEQADAREVLALVEDAGRQALALPGDIADESFCQQLVADAVEGLGGLDILVNVAGKQVYVEQIAELTTAQLE ATFRTNVFAMFWLCKAALPHLPPGASIINTTSIQSYQPSPGLLDYAATKAAITAFTHAFAKQVAGRGVRVNAVAPGPVWT PLQPSGGQPQEKVEVFGSETPMKRPGQPAELAPVYVLLASQESSFVTGEIYGVTGGHHLP >Mature_299_residues PGEFDQTTMRDPLTQYPRPDFDKQPQPAPGLAGQMRPRPDHGETSYRGMGRLSGRRALITGADSGIGRAVAIAFAREGAN LALNYLHSEQADAREVLALVEDAGRQALALPGDIADESFCQQLVADAVEGLGGLDILVNVAGKQVYVEQIAELTTAQLEA TFRTNVFAMFWLCKAALPHLPPGASIINTTSIQSYQPSPGLLDYAATKAAITAFTHAFAKQVAGRGVRVNAVAPGPVWTP LQPSGGQPQEKVEVFGSETPMKRPGQPAELAPVYVLLASQESSFVTGEIYGVTGGHHLP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI32483357, Length=253, Percent_Identity=30.4347826086957, Blast_Score=115, Evalue=4e-26, Organism=Homo sapiens, GI40254992, Length=245, Percent_Identity=33.8775510204082, Blast_Score=102, Evalue=6e-22, Organism=Homo sapiens, GI19923817, Length=262, Percent_Identity=29.0076335877863, Blast_Score=97, Evalue=2e-20, Organism=Homo sapiens, GI59889578, Length=219, Percent_Identity=33.3333333333333, Blast_Score=94, Evalue=1e-19, Organism=Homo sapiens, GI15277342, Length=257, Percent_Identity=30.7392996108949, Blast_Score=94, Evalue=2e-19, Organism=Homo sapiens, GI5031737, Length=246, Percent_Identity=28.0487804878049, Blast_Score=93, Evalue=3e-19, Organism=Homo sapiens, GI66933014, Length=259, Percent_Identity=33.2046332046332, Blast_Score=88, Evalue=1e-17, Organism=Homo sapiens, GI126723750, Length=256, Percent_Identity=26.5625, Blast_Score=86, Evalue=4e-17, Organism=Homo sapiens, GI33667109, Length=191, Percent_Identity=29.8429319371728, Blast_Score=78, Evalue=1e-14, Organism=Homo sapiens, GI4758504, Length=257, Percent_Identity=27.2373540856031, Blast_Score=75, Evalue=9e-14, Organism=Homo sapiens, GI126723191, Length=183, Percent_Identity=27.8688524590164, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI10190704, Length=253, Percent_Identity=27.6679841897233, Blast_Score=72, Evalue=8e-13, Organism=Homo sapiens, GI31542939, Length=202, Percent_Identity=31.6831683168317, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI142976729, Length=193, Percent_Identity=29.0155440414508, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI40254986, Length=198, Percent_Identity=28.2828282828283, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI4504505, Length=254, Percent_Identity=25.9842519685039, Blast_Score=65, Evalue=8e-11, Organism=Escherichia coli, GI1789378, Length=290, Percent_Identity=60.6896551724138, Blast_Score=367, Evalue=1e-103, Organism=Escherichia coli, GI2367175, Length=245, Percent_Identity=37.1428571428571, Blast_Score=144, Evalue=6e-36, Organism=Escherichia coli, GI87082100, Length=260, Percent_Identity=32.6923076923077, Blast_Score=118, Evalue=5e-28, Organism=Escherichia coli, GI2367365, Length=247, Percent_Identity=33.6032388663968, Blast_Score=114, Evalue=6e-27, Organism=Escherichia coli, GI1787905, Length=247, Percent_Identity=31.9838056680162, Blast_Score=106, Evalue=2e-24, Organism=Escherichia coli, GI87082160, Length=250, Percent_Identity=31.6, Blast_Score=102, Evalue=2e-23, Organism=Escherichia coli, GI1789208, Length=249, Percent_Identity=30.1204819277108, Blast_Score=98, Evalue=6e-22, Organism=Escherichia coli, GI1790717, Length=246, Percent_Identity=28.4552845528455, Blast_Score=94, Evalue=9e-21, Organism=Escherichia coli, GI1787335, Length=251, Percent_Identity=30.2788844621514, Blast_Score=93, Evalue=3e-20, Organism=Escherichia coli, GI1788459, Length=248, Percent_Identity=28.2258064516129, Blast_Score=91, Evalue=7e-20, Organism=Escherichia coli, GI1786812, Length=260, Percent_Identity=29.2307692307692, Blast_Score=85, Evalue=5e-18, Organism=Escherichia coli, GI1787526, Length=244, Percent_Identity=29.9180327868852, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI1787545, Length=260, Percent_Identity=26.1538461538462, Blast_Score=67, Evalue=2e-12, Organism=Escherichia coli, GI1786701, Length=228, Percent_Identity=27.1929824561404, Blast_Score=63, Evalue=2e-11, Organism=Caenorhabditis elegans, GI71994604, Length=254, Percent_Identity=33.0708661417323, Blast_Score=116, Evalue=1e-26, Organism=Caenorhabditis elegans, GI17559104, Length=264, Percent_Identity=32.1969696969697, Blast_Score=114, Evalue=7e-26, Organism=Caenorhabditis elegans, GI17561402, Length=251, Percent_Identity=31.0756972111554, Blast_Score=113, Evalue=1e-25, Organism=Caenorhabditis elegans, GI17531453, Length=272, Percent_Identity=32.3529411764706, Blast_Score=110, Evalue=7e-25, Organism=Caenorhabditis elegans, GI71994600, Length=247, Percent_Identity=29.9595141700405, Blast_Score=110, Evalue=1e-24, Organism=Caenorhabditis elegans, GI193204405, Length=264, Percent_Identity=32.5757575757576, Blast_Score=108, Evalue=2e-24, Organism=Caenorhabditis elegans, GI17563726, Length=265, Percent_Identity=30.9433962264151, Blast_Score=107, Evalue=7e-24, Organism=Caenorhabditis elegans, GI17562904, Length=265, Percent_Identity=30.188679245283, Blast_Score=107, Evalue=1e-23, Organism=Caenorhabditis elegans, GI17562906, Length=271, Percent_Identity=30.9963099630996, Blast_Score=106, Evalue=2e-23, Organism=Caenorhabditis elegans, GI17560676, Length=248, Percent_Identity=27.4193548387097, Blast_Score=105, Evalue=3e-23, Organism=Caenorhabditis elegans, GI25147288, Length=251, Percent_Identity=32.2709163346614, Blast_Score=102, Evalue=2e-22, Organism=Caenorhabditis elegans, GI72000259, Length=270, Percent_Identity=30.3703703703704, Blast_Score=102, Evalue=2e-22, Organism=Caenorhabditis elegans, GI17544670, Length=266, Percent_Identity=30.4511278195489, Blast_Score=102, Evalue=3e-22, Organism=Caenorhabditis elegans, GI17560150, Length=268, Percent_Identity=30.9701492537313, Blast_Score=99, Evalue=2e-21, Organism=Caenorhabditis elegans, GI17562908, Length=270, Percent_Identity=30, Blast_Score=99, Evalue=2e-21, Organism=Caenorhabditis elegans, GI17560220, Length=266, Percent_Identity=31.203007518797, Blast_Score=98, Evalue=6e-21, Organism=Caenorhabditis elegans, GI17562990, Length=268, Percent_Identity=30.2238805970149, Blast_Score=97, Evalue=9e-21, Organism=Caenorhabditis elegans, GI17555706, Length=248, Percent_Identity=31.0483870967742, Blast_Score=96, Evalue=2e-20, Organism=Caenorhabditis elegans, GI17562910, Length=268, Percent_Identity=30.2238805970149, Blast_Score=91, Evalue=5e-19, Organism=Caenorhabditis elegans, GI17538480, Length=269, Percent_Identity=30.4832713754647, Blast_Score=91, Evalue=1e-18, Organism=Caenorhabditis elegans, GI17551412, Length=272, Percent_Identity=29.4117647058824, Blast_Score=89, Evalue=4e-18, Organism=Caenorhabditis elegans, GI17560332, Length=268, Percent_Identity=29.4776119402985, Blast_Score=88, Evalue=5e-18, Organism=Caenorhabditis elegans, GI17508651, Length=253, Percent_Identity=29.6442687747036, Blast_Score=82, Evalue=3e-16, Organism=Caenorhabditis elegans, GI17538486, Length=269, Percent_Identity=27.5092936802974, Blast_Score=80, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17565030, Length=263, Percent_Identity=26.9961977186312, Blast_Score=74, Evalue=6e-14, Organism=Caenorhabditis elegans, GI17538182, Length=264, Percent_Identity=28.030303030303, Blast_Score=72, Evalue=2e-13, Organism=Caenorhabditis elegans, GI115534694, Length=251, Percent_Identity=25.8964143426295, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI71982365, Length=256, Percent_Identity=27.34375, Blast_Score=71, Evalue=6e-13, Organism=Caenorhabditis elegans, GI17568967, Length=195, Percent_Identity=26.6666666666667, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17536651, Length=269, Percent_Identity=27.5092936802974, Blast_Score=69, Evalue=4e-12, Organism=Caenorhabditis elegans, GI17564282, Length=188, Percent_Identity=27.1276595744681, Blast_Score=67, Evalue=1e-11, Organism=Saccharomyces cerevisiae, GI6323882, Length=230, Percent_Identity=29.1304347826087, Blast_Score=78, Evalue=1e-15, Organism=Saccharomyces cerevisiae, GI6322226, Length=193, Percent_Identity=29.5336787564767, Blast_Score=70, Evalue=6e-13, Organism=Saccharomyces cerevisiae, GI6322861, Length=197, Percent_Identity=27.9187817258883, Blast_Score=64, Evalue=3e-11, Organism=Drosophila melanogaster, GI24644339, Length=253, Percent_Identity=36.3636363636364, Blast_Score=133, Evalue=2e-31, Organism=Drosophila melanogaster, GI21357041, Length=247, Percent_Identity=34.0080971659919, Blast_Score=118, Evalue=5e-27, Organism=Drosophila melanogaster, GI23397609, Length=253, Percent_Identity=33.9920948616601, Blast_Score=117, Evalue=7e-27, Organism=Drosophila melanogaster, GI28571526, Length=254, Percent_Identity=32.2834645669291, Blast_Score=115, Evalue=3e-26, Organism=Drosophila melanogaster, GI21355319, Length=249, Percent_Identity=30.1204819277108, Blast_Score=104, Evalue=9e-23, Organism=Drosophila melanogaster, GI24639444, Length=258, Percent_Identity=32.5581395348837, Blast_Score=99, Evalue=4e-21, Organism=Drosophila melanogaster, GI24643142, Length=245, Percent_Identity=31.4285714285714, Blast_Score=89, Evalue=3e-18, Organism=Drosophila melanogaster, GI24644337, Length=261, Percent_Identity=33.3333333333333, Blast_Score=86, Evalue=4e-17, Organism=Drosophila melanogaster, GI17737361, Length=257, Percent_Identity=26.8482490272374, Blast_Score=75, Evalue=5e-14, Organism=Drosophila melanogaster, GI21358495, Length=196, Percent_Identity=29.0816326530612, Blast_Score=72, Evalue=5e-13, Organism=Drosophila melanogaster, GI161076933, Length=202, Percent_Identity=28.7128712871287, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI24584748, Length=202, Percent_Identity=28.7128712871287, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI24581726, Length=209, Percent_Identity=28.2296650717703, Blast_Score=68, Evalue=6e-12, Organism=Drosophila melanogaster, GI24580925, Length=202, Percent_Identity=30.1980198019802, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI21357673, Length=199, Percent_Identity=28.1407035175879, Blast_Score=66, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 31869; Mature: 31738
Theoretical pI: Translated: 5.34; Mature: 5.34
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPGEFDQTTMRDPLTQYPRPDFDKQPQPAPGLAGQMRPRPDHGETSYRGMGRLSGRRALI CCCCCCCHHHHCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE TGADSGIGRAVAIAFAREGANLALNYLHSEQADAREVLALVEDAGRQALALPGDIADESF ECCCCCCCCEEEEEEHHCCCCEEEEHHHCCCCHHHHHHHHHHHCCCCEEECCCCCCHHHH CQQLVADAVEGLGGLDILVNVAGKQVYVEQIAELTTAQLEATFRTNVFAMFWLCKAALPH HHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC LPPGASIINTTSIQSYQPSPGLLDYAATKAAITAFTHAFAKQVAGRGVRVNAVAPGPVWT CCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCC PLQPSGGQPQEKVEVFGSETPMKRPGQPAELAPVYVLLASQESSFVTGEIYGVTGGHHLP CCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEEECCCCCCC >Mature Secondary Structure PGEFDQTTMRDPLTQYPRPDFDKQPQPAPGLAGQMRPRPDHGETSYRGMGRLSGRRALI CCCCCCHHHHCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE TGADSGIGRAVAIAFAREGANLALNYLHSEQADAREVLALVEDAGRQALALPGDIADESF ECCCCCCCCEEEEEEHHCCCCEEEEHHHCCCCHHHHHHHHHHHCCCCEEECCCCCCHHHH CQQLVADAVEGLGGLDILVNVAGKQVYVEQIAELTTAQLEATFRTNVFAMFWLCKAALPH HHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC LPPGASIINTTSIQSYQPSPGLLDYAATKAAITAFTHAFAKQVAGRGVRVNAVAPGPVWT CCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCC PLQPSGGQPQEKVEVFGSETPMKRPGQPAELAPVYVLLASQESSFVTGEIYGVTGGHHLP CCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]