Click here to switch to the map view.

The map label for this gene is rfaF [H]

Identifier: 238027118

GI number: 238027118

Start: 1656536

End: 1657639

Strand: Reverse

Name: rfaF [H]

Synonym: bglu_1g14980

Alternate gene names: 238027118

Gene position: 1657639-1656536 (Counterclockwise)

Preceding gene: 238027119

Following gene: 238027117

Centisome position: 42.43

GC content: 76.9

Gene sequence:

>1104_bases
ATGGCCCCGGCGCCGCGCCGCATCGCCGTGTTCCGCGCCTTGCAGCTGGGCGACATGCTGTGCGCCGTGCCGGCCCTGCG
CGCGTTGCGCCGTGCCGCGCCCGCGGCCCGGATCGCACTGATCGGCCTGCCGTGGGCGCAGGCGTTCGTCGAGCGCTACG
CCGACCTGCTCGACGAGCTGATCGTGTTTCCCGGCGCGCCCGGCTTCCCCGAACAGCCCGAGACCGACGCCGGCCTGCCC
GGCTTCTTCGCCGCCATGCGCGCGCGGCACTTCGATCTGGCGATCCAACTGCACGGCAGCGGCGGCGTGGCCAACACGCT
GCTGCTCGAACTCGGCGCGCGGGCCAATGCCGGCTTCGTGCAGCCCGGCGAGGCGGCGCGGCGCGGCACCTTCGTCGACT
GGCCCGATACGCTGCCCGAGCCCGAGCGCTACCTGCGGCTGATGGAGGCGCTCGGCGCGCCGGCCGTGGACCGCCGGCTC
GCGTTCCCGCTGCAGCCGCGCGACCACGACGAATGCACAGCCCTGATCGCCGAGCACGGCCTCGAACCGGCGCGGCTGGT
GCTGGTGCACCCGGGCGCGCAGCTGCCCTCGCGCCGCTGGCCGCCCGAGCGCTTCGCGGCGCTGGCCGACCGGCTGGCCG
CCGACGGCTGGCAGATCGCGATCACCGGCACCGCCGCCGAGGCGGCGCTGGCGGACGCCGTCTGCGGCGCGATGCAGGCC
CCCGCGCGGCATCTGGCCGGCGCCACCTCGCTCGGCGGCCTGGCCGCGCTGGTCGCGCGCTCGCGCCTCGTGGTCTGCAA
CGACACCGGCATCTCGCACGTCGCGGCGGCCCTGCGCACCGCCTCGGTGGTGGTGGCCTCGGGCAGCGACACGCGCCGCT
GGGCGCCGCTCGACCGCGTGCTGCACCGCGTGCTGGCCGACTATCCGCCGTGCCGCCCCTGCCTGTTCCGCGACTGCCCC
TACGGCCACGTCTGCGCGCTCAACGTCAGCGTCGAACAGGCCGCGGGCGCGGCGCGCAGGCAGCTCGAACACGTCCACGG
CGCCCACCGGGCCCCGCCCGCCGGCGCCGCCGGCCCCGCCAAGGAGACCCATCATGCTGCCTGA

Upstream 100 bases:

>100_bases
CCTGGACCTCGGTGCCGATCCCGTTTCTTTCCGTGTACTGGCGACTCTACGGCGCCGTCCGCTTCAAGGTGTTCTTCCTA
TGAGCGCATCCCCGTTCCCG

Downstream 100 bases:

>100_bases
GCGCCGCCGGCTGCGCGTGCTGACCTGGCACGTCCACGGCAACTACCTCTACTACCTGAGCCAGACGCCGCACGAGTTCC
ATCTGGTCACGCGGCCGGGC

Product: glycosyl transferase family protein

Products: NA

Alternate protein names: ADP-heptose--LPS heptosyltransferase II [H]

Number of amino acids: Translated: 367; Mature: 366

Protein sequence:

>367_residues
MAPAPRRIAVFRALQLGDMLCAVPALRALRRAAPAARIALIGLPWAQAFVERYADLLDELIVFPGAPGFPEQPETDAGLP
GFFAAMRARHFDLAIQLHGSGGVANTLLLELGARANAGFVQPGEAARRGTFVDWPDTLPEPERYLRLMEALGAPAVDRRL
AFPLQPRDHDECTALIAEHGLEPARLVLVHPGAQLPSRRWPPERFAALADRLAADGWQIAITGTAAEAALADAVCGAMQA
PARHLAGATSLGGLAALVARSRLVVCNDTGISHVAAALRTASVVVASGSDTRRWAPLDRVLHRVLADYPPCRPCLFRDCP
YGHVCALNVSVEQAAGAARRQLEHVHGAHRAPPAGAAGPAKETHHAA

Sequences:

>Translated_367_residues
MAPAPRRIAVFRALQLGDMLCAVPALRALRRAAPAARIALIGLPWAQAFVERYADLLDELIVFPGAPGFPEQPETDAGLP
GFFAAMRARHFDLAIQLHGSGGVANTLLLELGARANAGFVQPGEAARRGTFVDWPDTLPEPERYLRLMEALGAPAVDRRL
AFPLQPRDHDECTALIAEHGLEPARLVLVHPGAQLPSRRWPPERFAALADRLAADGWQIAITGTAAEAALADAVCGAMQA
PARHLAGATSLGGLAALVARSRLVVCNDTGISHVAAALRTASVVVASGSDTRRWAPLDRVLHRVLADYPPCRPCLFRDCP
YGHVCALNVSVEQAAGAARRQLEHVHGAHRAPPAGAAGPAKETHHAA
>Mature_366_residues
APAPRRIAVFRALQLGDMLCAVPALRALRRAAPAARIALIGLPWAQAFVERYADLLDELIVFPGAPGFPEQPETDAGLPG
FFAAMRARHFDLAIQLHGSGGVANTLLLELGARANAGFVQPGEAARRGTFVDWPDTLPEPERYLRLMEALGAPAVDRRLA
FPLQPRDHDECTALIAEHGLEPARLVLVHPGAQLPSRRWPPERFAALADRLAADGWQIAITGTAAEAALADAVCGAMQAP
ARHLAGATSLGGLAALVARSRLVVCNDTGISHVAAALRTASVVVASGSDTRRWAPLDRVLHRVLADYPPCRPCLFRDCPY
GHVCALNVSVEQAAGAARRQLEHVHGAHRAPPAGAAGPAKETHHAA

Specific function: Lipopolysaccharide core biosynthesis. [C]

COG id: COG0859

COG function: function code M; ADP-heptose:LPS heptosyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 9 family [H]

Homologues:

Organism=Escherichia coli, GI1790050, Length=291, Percent_Identity=27.4914089347079, Blast_Score=69, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002201
- InterPro:   IPR011910 [H]

Pfam domain/function: PF01075 Glyco_transf_9 [H]

EC number: 2.-.-.- [C]

Molecular weight: Translated: 38909; Mature: 38778

Theoretical pI: Translated: 8.06; Mature: 8.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAPAPRRIAVFRALQLGDMLCAVPALRALRRAAPAARIALIGLPWAQAFVERYADLLDEL
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEEEEECHHHHHHHHHHHHHHHHH
IVFPGAPGFPEQPETDAGLPGFFAAMRARHFDLAIQLHGSGGVANTLLLELGARANAGFV
HCCCCCCCCCCCCCCCCCCHHHHHHHHHHCEEEEEEECCCCCHHHHHHHHHCCCCCCCCC
QPGEAARRGTFVDWPDTLPEPERYLRLMEALGAPAVDRRLAFPLQPRDHDECTALIAEHG
CCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHEECCCCCCCHHHHHHHHHHHC
LEPARLVLVHPGAQLPSRRWPPERFAALADRLAADGWQIAITGTAAEAALADAVCGAMQA
CCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHH
PARHLAGATSLGGLAALVARSRLVVCNDTGISHVAAALRTASVVVASGSDTRRWAPLDRV
HHHHHCCCCHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHEEEEECCCCCCCCCHHHHH
LHRVLADYPPCRPCLFRDCPYGHVCALNVSVEQAAGAARRQLEHVHGAHRAPPAGAAGPA
HHHHHHCCCCCCCHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
KETHHAA
CCCCCCC
>Mature Secondary Structure 
APAPRRIAVFRALQLGDMLCAVPALRALRRAAPAARIALIGLPWAQAFVERYADLLDEL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEEEEECHHHHHHHHHHHHHHHHH
IVFPGAPGFPEQPETDAGLPGFFAAMRARHFDLAIQLHGSGGVANTLLLELGARANAGFV
HCCCCCCCCCCCCCCCCCCHHHHHHHHHHCEEEEEEECCCCCHHHHHHHHHCCCCCCCCC
QPGEAARRGTFVDWPDTLPEPERYLRLMEALGAPAVDRRLAFPLQPRDHDECTALIAEHG
CCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHEECCCCCCCHHHHHHHHHHHC
LEPARLVLVHPGAQLPSRRWPPERFAALADRLAADGWQIAITGTAAEAALADAVCGAMQA
CCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHH
PARHLAGATSLGGLAALVARSRLVVCNDTGISHVAAALRTASVVVASGSDTRRWAPLDRV
HHHHHCCCCHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHEEEEECCCCCCCCCHHHHH
LHRVLADYPPCRPCLFRDCPYGHVCALNVSVEQAAGAARRQLEHVHGAHRAPPAGAAGPA
HHHHHHCCCCCCCHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
KETHHAA
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503; 2198271; 8478319 [H]