| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is ypjH [H]
Identifier: 238027008
GI number: 238027008
Start: 1527651
End: 1528718
Strand: Direct
Name: ypjH [H]
Synonym: bglu_1g13860
Alternate gene names: 238027008
Gene position: 1527651-1528718 (Clockwise)
Preceding gene: 238027007
Following gene: 238027011
Centisome position: 39.11
GC content: 67.7
Gene sequence:
>1068_bases ATGAAGATTGCTCAGATCGCGCCACTGACCGAATCCGTGCCGCCGAAGCTCTACGGCGGCACCGAACGGGTCGTGTCCTA TATCACGGAGGCGCTGGTCGAACTTGGGCACGACGTGACCTTGTTCGCGAGCGGGGACTCGCGCACCAGCGCGAAGCTGG ACGCCGTATGGCCGCGCGCGATGCGGCTCGACGTGTCGATTCGCGACCGGGTGGCGCCGCACATGCTGCTGATGGAGCGC GTCGCGCGCCGCGCGAACGAGTTCGACGTGCTGCACTTCCACATGGACTATTACTCGTTCTCGGTGTTCCAGCGCCAGCC GGTGCCTTTCCTGACCACGCTGCACGGCCGCCTCGACCTGCTCGAGCAGCAGCCGGTGTTCGACCTGTTCGACACCGCGC CCGTCGTCTCGATCTCGAACGCGCAGCGCCAGCCGCTGCCTCGCGCGAACTGGCTGAAGACGGTGCAGCACGGCCTGCCC GACACGCTCTACACGCCGCAGCCGGTGGAACCGCAGTATCTCGCGTTCCTGGGCCGCATCTCGCCCGAGAAGCGCGTGGA CCGCGCGATCCGGATCGCCGAACGCTGCGGCCTGCCGATCCGGATCGCGGCGAAGATCGACGCGGCCGACGAGGAGTATT TCGAACGCAAGATCAAGCCCTTGTTCGCGCTGCCGCACGTCGAGTACATCGGCGAGATCGCCGACGACCAGAAGGCCGCG TTCCTGTCCGGCGCGCACGCGCTGCTGTTTCCGATCGACTGGCCCGAGCCGTTCGGCCTGGTCATGATCGAGGCGATGGC CTGCGGCACCCCGGTGATCGGCTTCAACCGCGGCGCCGTGCCGGAGGTGATCGAGGAGGGGCTGACCGGCTTCATCGTCG AGGACGAGATCGGCGCGGTGGCCGCCGTGAACCGCCTGCCGCTGCTGTCGCGCACCCGCGTGCGGCAGCGTTTCGAGGAG CGCTTCACGTCGCGCCGCATGGCGCAGCAGTACGTGGACGTCTACCAGGCCCTGATCCGCGCACAGAAGCGCTCGCGCTT CAAGGTGATCGATTCGGCCGCCTCCTGA
Upstream 100 bases:
>100_bases GTGCAATCCCGCTGCCGCCCGTCCTGACGATCGCGAATAATACCGGGAGTCGGCGCCTTGCTGCTGCGGCGCCGTCGACG GGCATCCCGGAGACAAAACG
Downstream 100 bases:
>100_bases CCCGCTGTCCTTTCGGGGCCGGCCTCCCGAGCGTGGCGCGGCGCCGTGGCGGATGCAAAAATGGCGCCCGTCGCGGGCGC CATTCGTTGCGGGTCGAGCC
Product: group 1 glycosyl transferase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 355; Mature: 355
Protein sequence:
>355_residues MKIAQIAPLTESVPPKLYGGTERVVSYITEALVELGHDVTLFASGDSRTSAKLDAVWPRAMRLDVSIRDRVAPHMLLMER VARRANEFDVLHFHMDYYSFSVFQRQPVPFLTTLHGRLDLLEQQPVFDLFDTAPVVSISNAQRQPLPRANWLKTVQHGLP DTLYTPQPVEPQYLAFLGRISPEKRVDRAIRIAERCGLPIRIAAKIDAADEEYFERKIKPLFALPHVEYIGEIADDQKAA FLSGAHALLFPIDWPEPFGLVMIEAMACGTPVIGFNRGAVPEVIEEGLTGFIVEDEIGAVAAVNRLPLLSRTRVRQRFEE RFTSRRMAQQYVDVYQALIRAQKRSRFKVIDSAAS
Sequences:
>Translated_355_residues MKIAQIAPLTESVPPKLYGGTERVVSYITEALVELGHDVTLFASGDSRTSAKLDAVWPRAMRLDVSIRDRVAPHMLLMER VARRANEFDVLHFHMDYYSFSVFQRQPVPFLTTLHGRLDLLEQQPVFDLFDTAPVVSISNAQRQPLPRANWLKTVQHGLP DTLYTPQPVEPQYLAFLGRISPEKRVDRAIRIAERCGLPIRIAAKIDAADEEYFERKIKPLFALPHVEYIGEIADDQKAA FLSGAHALLFPIDWPEPFGLVMIEAMACGTPVIGFNRGAVPEVIEEGLTGFIVEDEIGAVAAVNRLPLLSRTRVRQRFEE RFTSRRMAQQYVDVYQALIRAQKRSRFKVIDSAAS >Mature_355_residues MKIAQIAPLTESVPPKLYGGTERVVSYITEALVELGHDVTLFASGDSRTSAKLDAVWPRAMRLDVSIRDRVAPHMLLMER VARRANEFDVLHFHMDYYSFSVFQRQPVPFLTTLHGRLDLLEQQPVFDLFDTAPVVSISNAQRQPLPRANWLKTVQHGLP DTLYTPQPVEPQYLAFLGRISPEKRVDRAIRIAERCGLPIRIAAKIDAADEEYFERKIKPLFALPHVEYIGEIADDQKAA FLSGAHALLFPIDWPEPFGLVMIEAMACGTPVIGFNRGAVPEVIEEGLTGFIVEDEIGAVAAVNRLPLLSRTRVRQRFEE RFTSRRMAQQYVDVYQALIRAQKRSRFKVIDSAAS
Specific function: Unknown
COG id: COG0438
COG function: function code M; Glycosyltransferase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyltransferase 1 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001296 - InterPro: IPR016040 [H]
Pfam domain/function: PF00534 Glycos_transf_1 [H]
EC number: NA
Molecular weight: Translated: 40123; Mature: 40123
Theoretical pI: Translated: 7.27; Mature: 7.27
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKIAQIAPLTESVPPKLYGGTERVVSYITEALVELGHDVTLFASGDSRTSAKLDAVWPRA CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHCCHH MRLDVSIRDRVAPHMLLMERVARRANEFDVLHFHMDYYSFSVFQRQPVPFLTTLHGRLDL HEECCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECHHHHHHHHCCCCCHHHHHHHHHHH LEQQPVFDLFDTAPVVSISNAQRQPLPRANWLKTVQHGLPDTLYTPQPVEPQYLAFLGRI HHCCCCHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCC SPEKRVDRAIRIAERCGLPIRIAAKIDAADEEYFERKIKPLFALPHVEYIGEIADDQKAA CHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHH FLSGAHALLFPIDWPEPFGLVMIEAMACGTPVIGFNRGAVPEVIEEGLTGFIVEDEIGAV HHCCCCEEEEECCCCCCHHHHHHHHHHCCCCCEECCCCCHHHHHHCCCCEEEEECCCCHH AAVNRLPLLSRTRVRQRFEERFTSRRMAQQYVDVYQALIRAQKRSRFKVIDSAAS HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure MKIAQIAPLTESVPPKLYGGTERVVSYITEALVELGHDVTLFASGDSRTSAKLDAVWPRA CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHCCHH MRLDVSIRDRVAPHMLLMERVARRANEFDVLHFHMDYYSFSVFQRQPVPFLTTLHGRLDL HEECCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECHHHHHHHHCCCCCHHHHHHHHHHH LEQQPVFDLFDTAPVVSISNAQRQPLPRANWLKTVQHGLPDTLYTPQPVEPQYLAFLGRI HHCCCCHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCC SPEKRVDRAIRIAERCGLPIRIAAKIDAADEEYFERKIKPLFALPHVEYIGEIADDQKAA CHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHH FLSGAHALLFPIDWPEPFGLVMIEAMACGTPVIGFNRGAVPEVIEEGLTGFIVEDEIGAV HHCCCCEEEEECCCCCCHHHHHHHHHHCCCCCEECCCCCHHHHHHCCCCEEEEECCCCHH AAVNRLPLLSRTRVRQRFEERFTSRRMAQQYVDVYQALIRAQKRSRFKVIDSAAS HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8760912; 9384377 [H]