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The map label for this gene is ppiD [H]

Identifier: 238026979

GI number: 238026979

Start: 1490425

End: 1492368

Strand: Direct

Name: ppiD [H]

Synonym: bglu_1g13560

Alternate gene names: 238026979

Gene position: 1490425-1492368 (Clockwise)

Preceding gene: 238026976

Following gene: 238026981

Centisome position: 38.15

GC content: 67.64

Gene sequence:

>1944_bases
ATGCTCGATTTCTTCCGCAATCACCAGCGCTTGATGATGTTCCTCCTGCTCCTGATCGTGCTGCCGGGGCTCGCGTTCGT
GGGGGTTCAGGGTTTCCGCGACTTCTTCGACGACAGCGCGAACGTGGCCTCGGTCGATGGGCGCAAGATCACGCGCGCCG
AATTCGACAGCGCCTACCGCCAGCAGATCGACCAGGCGCGCCAGGCGCTCGGCGCCCGCTACGACGCCAAGGTGATCGAC
ACGCCGGAGCGTCGCCAGCAACTGCTCGACGGCATGATCGAACAGCGCGCGCTGGCCGACGAGGTGCGCCGCCTGCACCT
GACGGCCTCCGATGCCGCAGTACGGGAGGCGCTGCTCAGCAATCCGATCGTCGCCGCGATGCGCAAGCCGGACGGCTCGA
TCGACGCGGAGCGCTACACGCAGCTGCTCGCGATGCAGGGCATGACGCCGGACCAGTATCAGGAAAGCATCCGCTACCAG
CTCACGCAGCAGCAACTGCCGAGCAACCTGATCGACAGCGCGTTTACGCCCAAAAGCGTGGCACGGAGCCTCACCGATCT
CGCGCAGCAGCAGCGCGAAATCCAGGCGCTGGTGCTGAAGCCGGCCGACTACGCGGCCAAGGTGCAGCCGACCGACGCGC
AGATCTCGGCCTACTACGATGCCCACAAGCAGGCCTTCGCGACGCCCGAGACGGCCACCATCCAGTACCTGGTGTTCACG
CCGGCCACCGCCGCCGCGTCGGCCACGCCGCCGACCGAGGCGGACATCCGCAAGTACTACGACGACAACACCGCGCGCTA
CCGCACCGAGGCGCAGGTGCGCGTGAGCCACATCTTCATCGCGGCCGCGCGCGGCGCGAGCGCGGCCGACAAGGCCGCCG
CGAGGGCGAAGGCCGATCGGCTGCTGGCCGACGTGAAGGCGCATCCGGACCAGTTCGCGCAGATCGCCGAGAAGAACTCG
CAGGACGCGCCGTCGGCGGCCAAGGGCGGCGACCTGGGCTACATCACGCGCGGCTCGACGGCGGGCGGCGCGGCGTTCGA
CGACGCGGCCTTCGCCTTGAAGCCGGGCGAGATCAGCAAGGTGGTCGAATCGGATCTCGGCTTTCACATCCTGAAGGCGA
CCGACGTGAAGCCTGCCATCGTCAAGCCGTTCGACGAGGTCAAGGAGTCGATCGCGGCCGAACTGAAGCAGCAGTACGCG
GCCAAGGCGTTCTCGGACAACTCGGAAGGCTTCAGCTCGAGCGTCTACGAGAAGGCCAAGAGCCTGCAGCCGACCGCCGA
CAAATACAAGCTGACGCTGCAAACGGCCACCGTCACGCCGCAGCCGAACCCGGCGCTGCCGCCCGACAGTCCGCTCAACA
ACGCGAAGTTCCTGGCCGCCGTGTTCGCGCCCGACTCGGTGAAGAACGGCAACAACACGCAGGCGATCGATGTCGGCAAC
AACACGCTGATCGCCGCGCACGTGATGAGCGACAAGCCGGCGGCGGTGCCGCCGCTCGACGCGATCAAGGACGCGGTGCG
CCAGAAGCTCATCGCCGACGAGAGCGCGAAGCTCGCCAAGCAGGACGGCATGGCGAGGCTCGCGGCGCTGCAGAAGTCGA
AGGCCACCACCGGCTTCCTGCCGGCCGAGAAGATCTCGCGCACGCAGACGCTCGGTTTGCCGCCGGACGCGGTCGCGGCG
ATCTACAAGGTCGATCCGAAGTCGCTGCCGGCTTATGTCGGCGTCGATCTCGGCGCGAACGGCGGCTATGCGATCTTCCG
CGTGAACGCGATCGTCGCTCCGGCGCCGGCCGATCCGCAGCAGCTCGCGGCCGCTCAGCAGCAGATCGCCCAGGTCTATG
CGCAAAGCGAGAGCGAGGCGTTCATGAAGGCGCTGCGCGCGCGTGCGAAGGTCAAGCTGTACGGCTCGGTGGCCGACGGC
AGCCGCAACGGCGACGACAACTGA

Upstream 100 bases:

>100_bases
CGCATCGGAACCCGGCGGCGCCTCCGTCGCGGCCCGTTTCGCCAATTTTCCGCTCCGCTGAGGTAATATCAGCCGTTTTG
TCCAGCCACGTTCGCTCCGC

Downstream 100 bases:

>100_bases
TCGGTCCGCCACGCGCCGGCGTGGCGCCCTTCACGACCACGGCAGCCCCGCCCGATATCGGGCGGGGCTGTTTTGCTCAT
GCGGTCCGCCGCGTCGCGCG

Product: peptidyl-prolyl cis-trans isomerase D

Products: NA

Alternate protein names: PPIase D; Rotamase D [H]

Number of amino acids: Translated: 647; Mature: 647

Protein sequence:

>647_residues
MLDFFRNHQRLMMFLLLLIVLPGLAFVGVQGFRDFFDDSANVASVDGRKITRAEFDSAYRQQIDQARQALGARYDAKVID
TPERRQQLLDGMIEQRALADEVRRLHLTASDAAVREALLSNPIVAAMRKPDGSIDAERYTQLLAMQGMTPDQYQESIRYQ
LTQQQLPSNLIDSAFTPKSVARSLTDLAQQQREIQALVLKPADYAAKVQPTDAQISAYYDAHKQAFATPETATIQYLVFT
PATAAASATPPTEADIRKYYDDNTARYRTEAQVRVSHIFIAAARGASAADKAAARAKADRLLADVKAHPDQFAQIAEKNS
QDAPSAAKGGDLGYITRGSTAGGAAFDDAAFALKPGEISKVVESDLGFHILKATDVKPAIVKPFDEVKESIAAELKQQYA
AKAFSDNSEGFSSSVYEKAKSLQPTADKYKLTLQTATVTPQPNPALPPDSPLNNAKFLAAVFAPDSVKNGNNTQAIDVGN
NTLIAAHVMSDKPAAVPPLDAIKDAVRQKLIADESAKLAKQDGMARLAALQKSKATTGFLPAEKISRTQTLGLPPDAVAA
IYKVDPKSLPAYVGVDLGANGGYAIFRVNAIVAPAPADPQQLAAAQQQIAQVYAQSESEAFMKALRARAKVKLYGSVADG
SRNGDDN

Sequences:

>Translated_647_residues
MLDFFRNHQRLMMFLLLLIVLPGLAFVGVQGFRDFFDDSANVASVDGRKITRAEFDSAYRQQIDQARQALGARYDAKVID
TPERRQQLLDGMIEQRALADEVRRLHLTASDAAVREALLSNPIVAAMRKPDGSIDAERYTQLLAMQGMTPDQYQESIRYQ
LTQQQLPSNLIDSAFTPKSVARSLTDLAQQQREIQALVLKPADYAAKVQPTDAQISAYYDAHKQAFATPETATIQYLVFT
PATAAASATPPTEADIRKYYDDNTARYRTEAQVRVSHIFIAAARGASAADKAAARAKADRLLADVKAHPDQFAQIAEKNS
QDAPSAAKGGDLGYITRGSTAGGAAFDDAAFALKPGEISKVVESDLGFHILKATDVKPAIVKPFDEVKESIAAELKQQYA
AKAFSDNSEGFSSSVYEKAKSLQPTADKYKLTLQTATVTPQPNPALPPDSPLNNAKFLAAVFAPDSVKNGNNTQAIDVGN
NTLIAAHVMSDKPAAVPPLDAIKDAVRQKLIADESAKLAKQDGMARLAALQKSKATTGFLPAEKISRTQTLGLPPDAVAA
IYKVDPKSLPAYVGVDLGANGGYAIFRVNAIVAPAPADPQQLAAAQQQIAQVYAQSESEAFMKALRARAKVKLYGSVADG
SRNGDDN
>Mature_647_residues
MLDFFRNHQRLMMFLLLLIVLPGLAFVGVQGFRDFFDDSANVASVDGRKITRAEFDSAYRQQIDQARQALGARYDAKVID
TPERRQQLLDGMIEQRALADEVRRLHLTASDAAVREALLSNPIVAAMRKPDGSIDAERYTQLLAMQGMTPDQYQESIRYQ
LTQQQLPSNLIDSAFTPKSVARSLTDLAQQQREIQALVLKPADYAAKVQPTDAQISAYYDAHKQAFATPETATIQYLVFT
PATAAASATPPTEADIRKYYDDNTARYRTEAQVRVSHIFIAAARGASAADKAAARAKADRLLADVKAHPDQFAQIAEKNS
QDAPSAAKGGDLGYITRGSTAGGAAFDDAAFALKPGEISKVVESDLGFHILKATDVKPAIVKPFDEVKESIAAELKQQYA
AKAFSDNSEGFSSSVYEKAKSLQPTADKYKLTLQTATVTPQPNPALPPDSPLNNAKFLAAVFAPDSVKNGNNTQAIDVGN
NTLIAAHVMSDKPAAVPPLDAIKDAVRQKLIADESAKLAKQDGMARLAALQKSKATTGFLPAEKISRTQTLGLPPDAVAA
IYKVDPKSLPAYVGVDLGANGGYAIFRVNAIVAPAPADPQQLAAAQQQIAQVYAQSESEAFMKALRARAKVKLYGSVADG
SRNGDDN

Specific function: PPIases accelerate the folding of proteins. Seems to be involved in the folding of outer membrane proteins [H]

COG id: COG0760

COG function: function code O; Parvulin-like peptidyl-prolyl isomerase

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein; Periplasmic side [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PpiC domain [H]

Homologues:

Organism=Escherichia coli, GI1786645, Length=645, Percent_Identity=28.2170542635659, Blast_Score=188, Evalue=8e-49,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000297
- InterPro:   IPR023058
- InterPro:   IPR015391
- InterPro:   IPR008880 [H]

Pfam domain/function: PF00639 Rotamase; PF09312 SurA_N [H]

EC number: =5.2.1.8 [H]

Molecular weight: Translated: 69699; Mature: 69699

Theoretical pI: Translated: 7.85; Mature: 7.85

Prosite motif: PS50198 PPIC_PPIASE_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDFFRNHQRLMMFLLLLIVLPGLAFVGVQGFRDFFDDSANVASVDGRKITRAEFDSAYR
CCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCEEECCCCEEHHHHHHHHHH
QQIDQARQALGARYDAKVIDTPERRQQLLDGMIEQRALADEVRRLHLTASDAAVREALLS
HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHC
NPIVAAMRKPDGSIDAERYTQLLAMQGMTPDQYQESIRYQLTQQQLPSNLIDSAFTPKSV
CCCEEEEECCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHCCCCHHHH
ARSLTDLAQQQREIQALVLKPADYAAKVQPTDAQISAYYDAHKQAFATPETATIQYLVFT
HHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEE
PATAAASATPPTEADIRKYYDDNTARYRTEAQVRVSHIFIAAARGASAADKAAARAKADR
CCHHCCCCCCCCHHHHHHHHCCCCHHEEHHHHEEEEEEEEEECCCCCHHHHHHHHHHHHH
LLADVKAHPDQFAQIAEKNSQDAPSAAKGGDLGYITRGSTAGGAAFDDAAFALKPGEISK
HHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCEEECCHHHHH
VVESDLGFHILKATDVKPAIVKPFDEVKESIAAELKQQYAAKAFSDNSEGFSSSVYEKAK
HHHHCCCEEEEEECCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
SLQPTADKYKLTLQTATVTPQPNPALPPDSPLNNAKFLAAVFAPDSVKNGNNTQAIDVGN
CCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCEEEECCC
NTLIAAHVMSDKPAAVPPLDAIKDAVRQKLIADESAKLAKQDGMARLAALQKSKATTGFL
CEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHCCHHHHHHHHHHCCCCCCC
PAEKISRTQTLGLPPDAVAAIYKVDPKSLPAYVGVDLGANGGYAIFRVNAIVAPAPADPQ
CHHHHCCHHCCCCCHHHHHEEEEECHHHCCEEEEEEECCCCCEEEEEEEEEEECCCCCHH
QLAAAQQQIAQVYAQSESEAFMKALRARAKVKLYGSVADGSRNGDDN
HHHHHHHHHHHHHHCCHHHHHHHHHHHHCEEEEEEEECCCCCCCCCC
>Mature Secondary Structure
MLDFFRNHQRLMMFLLLLIVLPGLAFVGVQGFRDFFDDSANVASVDGRKITRAEFDSAYR
CCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCEEECCCCEEHHHHHHHHHH
QQIDQARQALGARYDAKVIDTPERRQQLLDGMIEQRALADEVRRLHLTASDAAVREALLS
HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHC
NPIVAAMRKPDGSIDAERYTQLLAMQGMTPDQYQESIRYQLTQQQLPSNLIDSAFTPKSV
CCCEEEEECCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHCCCCHHHH
ARSLTDLAQQQREIQALVLKPADYAAKVQPTDAQISAYYDAHKQAFATPETATIQYLVFT
HHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEE
PATAAASATPPTEADIRKYYDDNTARYRTEAQVRVSHIFIAAARGASAADKAAARAKADR
CCHHCCCCCCCCHHHHHHHHCCCCHHEEHHHHEEEEEEEEEECCCCCHHHHHHHHHHHHH
LLADVKAHPDQFAQIAEKNSQDAPSAAKGGDLGYITRGSTAGGAAFDDAAFALKPGEISK
HHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCEEECCHHHHH
VVESDLGFHILKATDVKPAIVKPFDEVKESIAAELKQQYAAKAFSDNSEGFSSSVYEKAK
HHHHCCCEEEEEECCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
SLQPTADKYKLTLQTATVTPQPNPALPPDSPLNNAKFLAAVFAPDSVKNGNNTQAIDVGN
CCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCEEEECCC
NTLIAAHVMSDKPAAVPPLDAIKDAVRQKLIADESAKLAKQDGMARLAALQKSKATTGFL
CEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHCCHHHHHHHHHHCCCCCCC
PAEKISRTQTLGLPPDAVAAIYKVDPKSLPAYVGVDLGANGGYAIFRVNAIVAPAPADPQ
CHHHHCCHHCCCCCHHHHHEEEEECHHHCCEEEEEEECCCCCEEEEEEEEEEECCCCCHH
QLAAAQQQIAQVYAQSESEAFMKALRARAKVKLYGSVADGSRNGDDN
HHHHHHHHHHHHHHCCHHHHHHHHHHHHCEEEEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]