| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is omp85 [H]
Identifier: 238026911
GI number: 238026911
Start: 1403246
End: 1405552
Strand: Direct
Name: omp85 [H]
Synonym: bglu_1g12810
Alternate gene names: 238026911
Gene position: 1403246-1405552 (Clockwise)
Preceding gene: 238026909
Following gene: 238026912
Centisome position: 35.92
GC content: 63.59
Gene sequence:
>2307_bases TTGTTCAAACCTCATCGCTTCGTACCCAAGACTGTAGCCGCCGCGGCGCTTGCCGTGCACGGACTCGCAGCCCACGCGAC GACACCGTTCGTCGTGCAGGATATCAAGATCGAGGGCTTGCAGCGTGTCGAAGCCGGTTCCGTGTTTGCCTACCTGCCGA TCAAGCAGGGTGACACGTTCACGGACGACAAGGCATCCGAAGCGATCCGCGCGCTCTATGCGACGGGCTTCTTCAACGAC GTGAAGATCGCGACGCAAGGCAATGTCGTGATCGTGCAGGTGCAGGAGCGTCCGGCGATCTCGTCGATCGACTTCACCGG CATCAAGGAGTTCGACAAGGACAACCTCCTCAAGGCCCTGAAGGCGGTCGGACTGTCGCAGGGCCGCTACTACGACAAGT CGCTGGTGGACAAGGCCGAGCAGGAGCTCAAGCGCCAGTACCTGACGCGCGGCTACTACGCCGCCGAGGTCACCACCACC GTGACGCCGGTCGACGCGAACCGCGTGTCGATCCTGTTCTCGGTGGCCGAAGGCCCGAGCGCGAAGATCCGGCAGATCAA CTTCATCGGCAACAAGACCTTCAGTTCTAGCACGCTGCGCAACGAGATGCAGCTGTCCACGCCGAACTGGTTCTCCTGGT ACACGAAGAACGACCTCTACTCGAAGGAAAAGCTCACGGGCGACCTCGAGAACGTGCGCTCGTACTACCTGAACCGCGGC TACCTCGAGTTCAACATCGATTCGACCCAGGTGTCGATCTCGCCCGACAAGAAGGACATGTACCTGACGGTCACGCTGCA TGAAGGCGAGCCGTACACGATCTCGAGCGTGAAGCTGGCGGGCAACCTGCTCGATCGCGAGGCCGAGCTGCAGAAGCTCG TCAAGATCAAGGCCGGCGACCGCTTCTCGGCCGAGAAGCTGCAGCAGACCACCAAGGCGATCGTCGACAAGCTGGGCGAA TACGGCTACGCGTTCGCGACCGTCAACGCCCAGCCGAACATCGACCAGTCCACGCACAAGGTCGGCCTCACGCTGATGGT CGATCCGGGCCGCCGCGTCTACGTGCGCCGCATCAACGTGGTGGGCAACTCGCGCACGCGCGACGAGGTGGTGCGCCGCG AGATGCGCCAGCTCGAGAGCTCGTGGTTCGATTCGGGCCGCCTCGCGCTGTCGAAGGATCGCATCAACCGTCTCGGCTAC TTCACCGACGTCGACGTGACGACGGTGCCGGTCGAGGGCACCAGCGACGAAGTCGACGTGAACGTGAAGGTGACCGAGAA GCCGACCGGCGCGATCACGCTCGGCGCGGGCTTCTCCTCGACCGACAAGGTGGTGCTGTCGGCCGGCATCTCGCAGGACA ACGTGTTCGGTTCGGGCACCAGCCTGTCGGTGAACGTGAACACGGCGCGCAGCTACCGCACGCTGACTGTCACGCAGGTC GATCCGTACTTCACGGTGGACGGCATCAAGCGCATCACCGACGTGTTCTATCGCACCTACCAGCCGCTTTACTATTCGAC GAACTCGAGCTTCCGGATCATCACGGCCGGTGGCGACCTGAAGTTCGGCATTCCGTTCTCCGAGACCGACACGGTGTTCT TCGGCGCCGGTTTCGAGCAGAACCGCCTCGACATCGACGACAACACGCCCGCCAGCTACAAGGCCTACGTGCAGCAGTTC GGCCGCGTCTCGAACACGGTGCCGCTGACGATCGGCTGGTCGCGCGACGCGCGTGACAGCGCGCTGATCCCGAGCCGCGG CTACTTCACCCAGGCGAACGCCGAATACGGCGCGCCGGTGGACAAGATCCAGTACTACAAGATGGACGTGCAGGCGCAGT ATTACTACTCGTTCGCGCGCGGCTTCATCCTGGGCCTGAACCTGCAGGGCGGGTACGGCAACGGCATCGGCAACTCGTAC CCGATCTTCAAGAACTACTACGCGGGCGGTATCGGCTCGGTGCGTGGCTACGAACCGAGTTCGCTCGGCCCGCGCGACGC CACCACCAACGACCCGATCGGCGGCTCGAAGATGGTGGTCGGCAATATCGAGCTGACCTTCCCGCTGCCGGGCACGGGCT ACGACCGCACGCTGCGCGTGTTCACGTTCCTCGACGGCGGCAACGTCTGGGGCAACGTGCCGGGCGGCAACAGCACCGGC GCGAACGGCCTGCGCTACGGCTACGGCGTGGGTCTCGCCTGGATCTCGCCGATCGGCCCGCTCAAGCTGAGCCTCGGCTT CCCGCTGCAAAAGCACGAAGGCGACCAGTACCAGAAATTCCAGTTCCAGATCGGCACGGCGTTCTGA
Upstream 100 bases:
>100_bases TTCAACGACCTGTCTCGTTTAATCCATTCTTGAAGCGTCGGGCGGTGGCTGCGAGGGCCGCCGCCGGATCTGATGCAAGC TTAAATACTGGGGATGCACG
Downstream 100 bases:
>100_bases TCGGAACCGCAACACCAAACGCATCGAGAGGGTAATTTTGCTAACCGGTAAGTATTCGAAACGGATGATGTGCGTGCTGG CGCTGACGGCCGCGCTCGGC
Product: OMP85 family outer membrane protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 768; Mature: 768
Protein sequence:
>768_residues MFKPHRFVPKTVAAAALAVHGLAAHATTPFVVQDIKIEGLQRVEAGSVFAYLPIKQGDTFTDDKASEAIRALYATGFFND VKIATQGNVVIVQVQERPAISSIDFTGIKEFDKDNLLKALKAVGLSQGRYYDKSLVDKAEQELKRQYLTRGYYAAEVTTT VTPVDANRVSILFSVAEGPSAKIRQINFIGNKTFSSSTLRNEMQLSTPNWFSWYTKNDLYSKEKLTGDLENVRSYYLNRG YLEFNIDSTQVSISPDKKDMYLTVTLHEGEPYTISSVKLAGNLLDREAELQKLVKIKAGDRFSAEKLQQTTKAIVDKLGE YGYAFATVNAQPNIDQSTHKVGLTLMVDPGRRVYVRRINVVGNSRTRDEVVRREMRQLESSWFDSGRLALSKDRINRLGY FTDVDVTTVPVEGTSDEVDVNVKVTEKPTGAITLGAGFSSTDKVVLSAGISQDNVFGSGTSLSVNVNTARSYRTLTVTQV DPYFTVDGIKRITDVFYRTYQPLYYSTNSSFRIITAGGDLKFGIPFSETDTVFFGAGFEQNRLDIDDNTPASYKAYVQQF GRVSNTVPLTIGWSRDARDSALIPSRGYFTQANAEYGAPVDKIQYYKMDVQAQYYYSFARGFILGLNLQGGYGNGIGNSY PIFKNYYAGGIGSVRGYEPSSLGPRDATTNDPIGGSKMVVGNIELTFPLPGTGYDRTLRVFTFLDGGNVWGNVPGGNSTG ANGLRYGYGVGLAWISPIGPLKLSLGFPLQKHEGDQYQKFQFQIGTAF
Sequences:
>Translated_768_residues MFKPHRFVPKTVAAAALAVHGLAAHATTPFVVQDIKIEGLQRVEAGSVFAYLPIKQGDTFTDDKASEAIRALYATGFFND VKIATQGNVVIVQVQERPAISSIDFTGIKEFDKDNLLKALKAVGLSQGRYYDKSLVDKAEQELKRQYLTRGYYAAEVTTT VTPVDANRVSILFSVAEGPSAKIRQINFIGNKTFSSSTLRNEMQLSTPNWFSWYTKNDLYSKEKLTGDLENVRSYYLNRG YLEFNIDSTQVSISPDKKDMYLTVTLHEGEPYTISSVKLAGNLLDREAELQKLVKIKAGDRFSAEKLQQTTKAIVDKLGE YGYAFATVNAQPNIDQSTHKVGLTLMVDPGRRVYVRRINVVGNSRTRDEVVRREMRQLESSWFDSGRLALSKDRINRLGY FTDVDVTTVPVEGTSDEVDVNVKVTEKPTGAITLGAGFSSTDKVVLSAGISQDNVFGSGTSLSVNVNTARSYRTLTVTQV DPYFTVDGIKRITDVFYRTYQPLYYSTNSSFRIITAGGDLKFGIPFSETDTVFFGAGFEQNRLDIDDNTPASYKAYVQQF GRVSNTVPLTIGWSRDARDSALIPSRGYFTQANAEYGAPVDKIQYYKMDVQAQYYYSFARGFILGLNLQGGYGNGIGNSY PIFKNYYAGGIGSVRGYEPSSLGPRDATTNDPIGGSKMVVGNIELTFPLPGTGYDRTLRVFTFLDGGNVWGNVPGGNSTG ANGLRYGYGVGLAWISPIGPLKLSLGFPLQKHEGDQYQKFQFQIGTAF >Mature_768_residues MFKPHRFVPKTVAAAALAVHGLAAHATTPFVVQDIKIEGLQRVEAGSVFAYLPIKQGDTFTDDKASEAIRALYATGFFND VKIATQGNVVIVQVQERPAISSIDFTGIKEFDKDNLLKALKAVGLSQGRYYDKSLVDKAEQELKRQYLTRGYYAAEVTTT VTPVDANRVSILFSVAEGPSAKIRQINFIGNKTFSSSTLRNEMQLSTPNWFSWYTKNDLYSKEKLTGDLENVRSYYLNRG YLEFNIDSTQVSISPDKKDMYLTVTLHEGEPYTISSVKLAGNLLDREAELQKLVKIKAGDRFSAEKLQQTTKAIVDKLGE YGYAFATVNAQPNIDQSTHKVGLTLMVDPGRRVYVRRINVVGNSRTRDEVVRREMRQLESSWFDSGRLALSKDRINRLGY FTDVDVTTVPVEGTSDEVDVNVKVTEKPTGAITLGAGFSSTDKVVLSAGISQDNVFGSGTSLSVNVNTARSYRTLTVTQV DPYFTVDGIKRITDVFYRTYQPLYYSTNSSFRIITAGGDLKFGIPFSETDTVFFGAGFEQNRLDIDDNTPASYKAYVQQF GRVSNTVPLTIGWSRDARDSALIPSRGYFTQANAEYGAPVDKIQYYKMDVQAQYYYSFARGFILGLNLQGGYGNGIGNSY PIFKNYYAGGIGSVRGYEPSSLGPRDATTNDPIGGSKMVVGNIELTFPLPGTGYDRTLRVFTFLDGGNVWGNVPGGNSTG ANGLRYGYGVGLAWISPIGPLKLSLGFPLQKHEGDQYQKFQFQIGTAF
Specific function: Unknown
COG id: COG4775
COG function: function code M; Outer membrane protein/protective antigen OMA87
Gene ontology:
Cell location: Cell outer membrane (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the surface antigen D15 family [H]
Homologues:
Organism=Escherichia coli, GI1786374, Length=818, Percent_Identity=35.2078239608802, Blast_Score=477, Evalue=1e-136,
Paralogues:
None
Copy number: 180 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 80 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 380 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). 220 Molecules/Cell In: Stationary Phase, Ri
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000184 - InterPro: IPR016474 - InterPro: IPR010827 [H]
Pfam domain/function: PF01103 Bac_surface_Ag; PF07244 Surf_Ag_VNR [H]
EC number: NA
Molecular weight: Translated: 84839; Mature: 84839
Theoretical pI: Translated: 9.16; Mature: 9.16
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 0.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 0.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFKPHRFVPKTVAAAALAVHGLAAHATTPFVVQDIKIEGLQRVEAGSVFAYLPIKQGDTF CCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCEEECCCCEEEEEEECCCCCC TDDKASEAIRALYATGFFNDVKIATQGNVVIVQVQERPAISSIDFTGIKEFDKDNLLKAL CCCHHHHHHHHHHHHCCCCCEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHH KAVGLSQGRYYDKSLVDKAEQELKRQYLTRGYYAAEVTTTVTPVDANRVSILFSVAEGPS HHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEEEEEEECCCCCEEEEEEEECCCCC AKIRQINFIGNKTFSSSTLRNEMQLSTPNWFSWYTKNDLYSKEKLTGDLENVRSYYLNRG CEEEEEEEECCCCCCCHHHCCCEEECCCCCEEEEECCCCCCHHHHCCCHHHHHHHHHCCC YLEFNIDSTQVSISPDKKDMYLTVTLHEGEPYTISSVKLAGNLLDREAELQKLVKIKAGD EEEEEECCEEEEECCCCCCEEEEEEEECCCCEEEEEEEEHHHHHCCHHHHHHHHEECCCC RFSAEKLQQTTKAIVDKLGEYGYAFATVNAQPNIDQSTHKVGLTLMVDPGRRVYVRRINV CCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCEEEEEEEEECCCCEEEEEEEEE VGNSRTRDEVVRREMRQLESSWFDSGRLALSKDRINRLGYFTDVDVTTVPVEGTSDEVDV ECCCCCHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHCCCEEECCEEEEECCCCCCCEEE NVKVTEKPTGAITLGAGFSSTDKVVLSAGISQDNVFGSGTSLSVNVNTARSYRTLTVTQV EEEEECCCCCEEEECCCCCCCCCEEEEECCCCCCEECCCCEEEEEEECCCCEEEEEEEEE DPYFTVDGIKRITDVFYRTYQPLYYSTNSSFRIITAGGDLKFGIPFSETDTVFFGAGFEQ CCEEEHHHHHHHHHHHHHHCCCEEEECCCCEEEEEECCCEEECCCCCCCCEEEEECCCCC NRLDIDDNTPASYKAYVQQFGRVSNTVPLTIGWSRDARDSALIPSRGYFTQANAEYGAPV CCEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCH DKIQYYKMDVQAQYYYSFARGFILGLNLQGGYGNGIGNSYPIFKNYYAGGIGSVRGYEPS HHEEEEEEEEEHHHHHHHHCEEEEEEEECCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCC SLGPRDATTNDPIGGSKMVVGNIELTFPLPGTGYDRTLRVFTFLDGGNVWGNVPGGNSTG CCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCEEEEEEEEECCCEEECCCCCCCCC ANGLRYGYGVGLAWISPIGPLKLSLGFPLQKHEGDQYQKFQFQIGTAF CCCCEECCCCCCCEECCCCCEEEEECCCHHCCCCCCEEEEEEEEECCC >Mature Secondary Structure MFKPHRFVPKTVAAAALAVHGLAAHATTPFVVQDIKIEGLQRVEAGSVFAYLPIKQGDTF CCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCEEECCCCEEEEEEECCCCCC TDDKASEAIRALYATGFFNDVKIATQGNVVIVQVQERPAISSIDFTGIKEFDKDNLLKAL CCCHHHHHHHHHHHHCCCCCEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHH KAVGLSQGRYYDKSLVDKAEQELKRQYLTRGYYAAEVTTTVTPVDANRVSILFSVAEGPS HHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEEEEEEECCCCCEEEEEEEECCCCC AKIRQINFIGNKTFSSSTLRNEMQLSTPNWFSWYTKNDLYSKEKLTGDLENVRSYYLNRG CEEEEEEEECCCCCCCHHHCCCEEECCCCCEEEEECCCCCCHHHHCCCHHHHHHHHHCCC YLEFNIDSTQVSISPDKKDMYLTVTLHEGEPYTISSVKLAGNLLDREAELQKLVKIKAGD EEEEEECCEEEEECCCCCCEEEEEEEECCCCEEEEEEEEHHHHHCCHHHHHHHHEECCCC RFSAEKLQQTTKAIVDKLGEYGYAFATVNAQPNIDQSTHKVGLTLMVDPGRRVYVRRINV CCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCEEEEEEEEECCCCEEEEEEEEE VGNSRTRDEVVRREMRQLESSWFDSGRLALSKDRINRLGYFTDVDVTTVPVEGTSDEVDV ECCCCCHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHCCCEEECCEEEEECCCCCCCEEE NVKVTEKPTGAITLGAGFSSTDKVVLSAGISQDNVFGSGTSLSVNVNTARSYRTLTVTQV EEEEECCCCCEEEECCCCCCCCCEEEEECCCCCCEECCCCEEEEEEECCCCEEEEEEEEE DPYFTVDGIKRITDVFYRTYQPLYYSTNSSFRIITAGGDLKFGIPFSETDTVFFGAGFEQ CCEEEHHHHHHHHHHHHHHCCCEEEECCCCEEEEEECCCEEECCCCCCCCEEEEECCCCC NRLDIDDNTPASYKAYVQQFGRVSNTVPLTIGWSRDARDSALIPSRGYFTQANAEYGAPV CCEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCH DKIQYYKMDVQAQYYYSFARGFILGLNLQGGYGNGIGNSYPIFKNYYAGGIGSVRGYEPS HHEEEEEEEEEHHHHHHHHCEEEEEEEECCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCC SLGPRDATTNDPIGGSKMVVGNIELTFPLPGTGYDRTLRVFTFLDGGNVWGNVPGGNSTG CCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCEEEEEEEEECCCEEECCCCCCCCC ANGLRYGYGVGLAWISPIGPLKLSLGFPLQKHEGDQYQKFQFQIGTAF CCCCEECCCCCCCEECCCCCEEEEECCCHHCCCCCCEEEEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 10710307 [H]