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The map label for this gene is ydhO [H]

Identifier: 238026863

GI number: 238026863

Start: 1343951

End: 1344631

Strand: Direct

Name: ydhO [H]

Synonym: bglu_1g12310

Alternate gene names: 238026863

Gene position: 1343951-1344631 (Clockwise)

Preceding gene: 238026862

Following gene: 238026865

Centisome position: 34.4

GC content: 64.17

Gene sequence:

>681_bases
ATGCAGTACCGATCCATCACTCAGGTTTGCAGGCGCGCTGTCGCCGGGTTGTTTTTTGGCGCTCTGATGGCTGCAACTTC
CGGCGCGTTCGCCGACGAAGCAGGCAGCTTGAATCAGAACGTCGCATTGTCGCCACAGTCCGTGCCGACGCCCTCCGTCC
TCAATGCCCAGCCGAGCGCCCCGAGCGGCGGCGCGCGTTCGTTCCTGTCCGGCATGGCCGGCAAGGCGGGCGACGTGGTG
GTCGGTGCGCTGAACATGATCGGCGTACGCTACCGCTGGGGTGGCAATTCACCCGATTCCGGGCTCGATTGCAGCGGCTT
CGTGCGCTACGTGTTCCAGGACACGCTGGGCATGTCGCTGCCGCGCCGCGCCGAGGAGATGAGCCGCGTCGGCGAGAAGG
TTCGCATGAGCGAGCTGAAGCCGGGCGATCTCGTGTTCTTCAACACGATGCGCCGCACCTTCTCACACGTCGGCATCTAC
ATCGGCGATAACAAGTTCGTGCACTCGCCGTCCACCGGCAGCACGATCCGCGTCGACGATCTCGAAAGCAGCTACTGGGA
AAAGCGTTTCACCGGGGCTCGCCGGCTCGAGTCGGAGTTCCCGACCAAGCCCGACGAACTGCGCCAGCGCGTGAGCGCGA
CTATCAACGGCAATCCGTCCGACTTCAATCCCGGCAACTGA

Upstream 100 bases:

>100_bases
TTGAATTTTTCAATTCATTTTGACAAACAAATACCGTCTAGCTAGTATCGACCGAAATTTCCGCCAATCAGCTGATTTTT
AAGCACAATATTACCGACCG

Downstream 100 bases:

>100_bases
GCGCGGGCGGGCTGCGCCCGCGTCACGTCGCGGGGCGTTGGCGCGCCCATCGATCGAGCCACCCCGGCCTGCGCAAGGAG
GCCGGGGTTTTTCTTTGGCG

Product: NLP/P60 family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 226; Mature: 226

Protein sequence:

>226_residues
MQYRSITQVCRRAVAGLFFGALMAATSGAFADEAGSLNQNVALSPQSVPTPSVLNAQPSAPSGGARSFLSGMAGKAGDVV
VGALNMIGVRYRWGGNSPDSGLDCSGFVRYVFQDTLGMSLPRRAEEMSRVGEKVRMSELKPGDLVFFNTMRRTFSHVGIY
IGDNKFVHSPSTGSTIRVDDLESSYWEKRFTGARRLESEFPTKPDELRQRVSATINGNPSDFNPGN

Sequences:

>Translated_226_residues
MQYRSITQVCRRAVAGLFFGALMAATSGAFADEAGSLNQNVALSPQSVPTPSVLNAQPSAPSGGARSFLSGMAGKAGDVV
VGALNMIGVRYRWGGNSPDSGLDCSGFVRYVFQDTLGMSLPRRAEEMSRVGEKVRMSELKPGDLVFFNTMRRTFSHVGIY
IGDNKFVHSPSTGSTIRVDDLESSYWEKRFTGARRLESEFPTKPDELRQRVSATINGNPSDFNPGN
>Mature_226_residues
MQYRSITQVCRRAVAGLFFGALMAATSGAFADEAGSLNQNVALSPQSVPTPSVLNAQPSAPSGGARSFLSGMAGKAGDVV
VGALNMIGVRYRWGGNSPDSGLDCSGFVRYVFQDTLGMSLPRRAEEMSRVGEKVRMSELKPGDLVFFNTMRRTFSHVGIY
IGDNKFVHSPSTGSTIRVDDLESSYWEKRFTGARRLESEFPTKPDELRQRVSATINGNPSDFNPGN

Specific function: Unknown

COG id: COG0791

COG function: function code M; Cell wall-associated hydrolases (invasion-associated proteins)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nlpC/p60 family [H]

Homologues:

Organism=Escherichia coli, GI1787944, Length=138, Percent_Identity=44.2028985507246, Blast_Score=122, Evalue=2e-29,
Organism=Escherichia coli, GI1786421, Length=166, Percent_Identity=35.5421686746988, Blast_Score=107, Evalue=7e-25,
Organism=Escherichia coli, GI1788501, Length=111, Percent_Identity=47.7477477477478, Blast_Score=101, Evalue=4e-23,
Organism=Escherichia coli, GI1788001, Length=110, Percent_Identity=40, Blast_Score=86, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000064 [H]

Pfam domain/function: PF00877 NLPC_P60 [H]

EC number: NA

Molecular weight: Translated: 24457; Mature: 24457

Theoretical pI: Translated: 9.50; Mature: 9.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQYRSITQVCRRAVAGLFFGALMAATSGAFADEAGSLNQNVALSPQSVPTPSVLNAQPSA
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCEEECCCCCCCCCCCCCCCCC
PSGGARSFLSGMAGKAGDVVVGALNMIGVRYRWGGNSPDSGLDCSGFVRYVFQDTLGMSL
CCCHHHHHHHHHCCCCCCHHHHHHHHHEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCC
PRRAEEMSRVGEKVRMSELKPGDLVFFNTMRRTFSHVGIYIGDNKFVHSPSTGSTIRVDD
CHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHCCEEECCCEEEECCCCCCEEEEEC
LESSYWEKRFTGARRLESEFPTKPDELRQRVSATINGNPSDFNPGN
CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MQYRSITQVCRRAVAGLFFGALMAATSGAFADEAGSLNQNVALSPQSVPTPSVLNAQPSA
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCEEECCCCCCCCCCCCCCCCC
PSGGARSFLSGMAGKAGDVVVGALNMIGVRYRWGGNSPDSGLDCSGFVRYVFQDTLGMSL
CCCHHHHHHHHHCCCCCCHHHHHHHHHEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCC
PRRAEEMSRVGEKVRMSELKPGDLVFFNTMRRTFSHVGIYIGDNKFVHSPSTGSTIRVDD
CHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHCCEEECCCEEEECCCCCCEEEEEC
LESSYWEKRFTGARRLESEFPTKPDELRQRVSATINGNPSDFNPGN
CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]