| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is 238026838
Identifier: 238026838
GI number: 238026838
Start: 1314003
End: 1314389
Strand: Reverse
Name: 238026838
Synonym: bglu_1g11990
Alternate gene names: NA
Gene position: 1314389-1314003 (Counterclockwise)
Preceding gene: 238026839
Following gene: 238026836
Centisome position: 33.65
GC content: 60.47
Gene sequence:
>387_bases ATGACCAAGGTTCAATTCATCGAGCGAGACGGCCAGCCTGCGTTCGCTGTCGTACCAATCGAAGTTTGGGACCGCGTGAA GCATCTCGTCGAAGACCTTGAGGACGAAGCCCAGTTTGCTCAAGCCAAGGCACAAGACGATGGCGAGCGGATCCCGGCCG CCGTCCTCGATGCAGAACTGGCCGGCGACCATCCCGTGCGTGCCTGGCGGAACCATCGGCGGCTCACGCAAGACGCGCTC GCGACGGCAGCCGGTATCAGCAAGCCGTACCTCAGTCAGATCGAAACACGGCAGCGCGTCGGAACTACAGACGCATTGGT GAAGATCGCTCACGCATTGAACGTGTCCATTGCCGTGCTCATCGAGCCCACGGCCGAGAAGAAATGA
Upstream 100 bases:
>100_bases ACCGGCTCCGAGTCGGCGACTGGCGCGTGCTTTATGAAATCGAGGACGACCGCATCGTGATCGTCGTGCTCGCGATCAAG CCCCGTGGAGGTGCCTACAA
Downstream 100 bases:
>100_bases CACGTATCGATTGCCGTCCCCGCATCGGCTCGATCCGCTAGAGCCCAACACGAAAAAAGCCCCGAGGGCCAACGCACTCA GGGCTTCATATTCATTTCGT
Product: putative helix-turn-helix transcriptional regulator
Products: NA
Alternate protein names: XRE Family Transcriptional Regulator; Helix-Turn-Helix Domain Protein; Helix-Turn-Helix Transcriptional Regulator; Phage-Related Transcriptional Regulator
Number of amino acids: Translated: 128; Mature: 127
Protein sequence:
>128_residues MTKVQFIERDGQPAFAVVPIEVWDRVKHLVEDLEDEAQFAQAKAQDDGERIPAAVLDAELAGDHPVRAWRNHRRLTQDAL ATAAGISKPYLSQIETRQRVGTTDALVKIAHALNVSIAVLIEPTAEKK
Sequences:
>Translated_128_residues MTKVQFIERDGQPAFAVVPIEVWDRVKHLVEDLEDEAQFAQAKAQDDGERIPAAVLDAELAGDHPVRAWRNHRRLTQDAL ATAAGISKPYLSQIETRQRVGTTDALVKIAHALNVSIAVLIEPTAEKK >Mature_127_residues TKVQFIERDGQPAFAVVPIEVWDRVKHLVEDLEDEAQFAQAKAQDDGERIPAAVLDAELAGDHPVRAWRNHRRLTQDALA TAAGISKPYLSQIETRQRVGTTDALVKIAHALNVSIAVLIEPTAEKK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 14158; Mature: 14027
Theoretical pI: Translated: 5.63; Mature: 5.63
Prosite motif: PS50943 HTH_CROC1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 0.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 0.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTKVQFIERDGQPAFAVVPIEVWDRVKHLVEDLEDEAQFAQAKAQDDGERIPAAVLDAEL CCCCEEEECCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH AGDHPVRAWRNHRRLTQDALATAAGISKPYLSQIETRQRVGTTDALVKIAHALNVSIAVL CCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEE IEPTAEKK ECCCCCCC >Mature Secondary Structure TKVQFIERDGQPAFAVVPIEVWDRVKHLVEDLEDEAQFAQAKAQDDGERIPAAVLDAEL CCCEEEECCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH AGDHPVRAWRNHRRLTQDALATAAGISKPYLSQIETRQRVGTTDALVKIAHALNVSIAVL CCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEE IEPTAEKK ECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA