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The map label for this gene is intD [H]

Identifier: 238026834

GI number: 238026834

Start: 1310911

End: 1311978

Strand: Reverse

Name: intD [H]

Synonym: bglu_1g11940

Alternate gene names: 238026834

Gene position: 1311978-1310911 (Counterclockwise)

Preceding gene: 238026835

Following gene: 238026832

Centisome position: 33.58

GC content: 64.61

Gene sequence:

>1068_bases
ATGTCAATTCGCAAACATCAAAAATCCGGCATCTGGCACATCGATATCAGCGCGCCAGACGGCACGCGTATTAGACGATC
TGCTGAAACCCGCGATCGAAAGGCGGCGCAGGAGTACCACGATCGGCTGAAGTCGGATCTATGGCGGCAGGACAAGCTTG
GAGAAAGGGCCGACAGGACTTTCGAGGAGGCGGCTGTGCGGTTCCTGCAGATGTGCGCTGGCCAGCGGGACTATGCCGGC
AAGCTGCGTCACGTACTGTACTGGCGCGAGCGCTTCGGTGCCGCGCCCGTGCGGCTGCTCACGGCCGAGCGGATCTTCGA
CGCACTACCGACGCACAAGCTCGTGAACGGAGCGCCCACGAAGCTGCTGGCGCCCGGCACGCGCAACCGATACATCAACA
CCATCCGCCGGATGCTGAACCTCTGCCTCGAATGGGAGTGGCTGGACCGGGTGCCGAAGCTGCGCCGGTTCGAGGAGCCG
GACATCCGGGTGCGATGGGAAACGCCGGCCGTCATCACGCGAATGATCGGTGCGCTGCGCCTCGACTGGATGCGCGACGC
GGCGATCGTCGCCGTGGCGACCGGCATGCGCGAGTCCGAGCTGTTCGGCCTGCGCCTCTCGCAGTTGGATCTCGCGCAGT
GCAACGCGTGGATCACGCACGCCGGCGCGAAGTCGAAACGCGCCCGGTCGGTTCCGCTGAACGAGGATGCGATGAGCGTC
CTCGAGCGGCGCGCGAGAGCGGCCACGGATCTCATTTTCACGCGCGGCTACACGCGGGACAATGGGCCACCCAAGCTGAT
TCAGCAGATCGACAAGCGCGACTTCGCGCGGGCGTGCGCCGCGGCCGGCATGGTGGACTTCAACTGGCACGACTTGCGGC
ACACTTGGGCGTCGTGGCACGTCCAGCACGGCACGCCGCTGATGGTGCTGAAGGAGTTGGGAGGTTGGGAGACGGTGGCG
ATGGTCCAGAAGTACGCGCATCTGGCGCCTAGCCACCTTGCGCAGCACGCGGCGAACGTCAATTTTCTGTCAAAGTCGCT
GAACCAACTGGACGAGGCGACCGAATAG

Upstream 100 bases:

>100_bases
GTTCGCGGCTCTGGCGCGTCTGGCCGTCCGATCTTGCCCGTCTTTCCGAAAAGCGCAACAATCCGACCCGGCTGTCGCTG
CGAGTCGGTGGAGATGGTGA

Downstream 100 bases:

>100_bases
GATTCGGCGCAAAGCCTTATCGCATAAAGACTTCAAGCTGGCCCGCCCTACACGATTCGAACGTGTGACCTACGGCTTAG
AAGGCCGTTGCTCTATCCGT

Product: Prophage integrase

Products: NA

Alternate protein names: Prophage QSR' integrase [H]

Number of amino acids: Translated: 355; Mature: 354

Protein sequence:

>355_residues
MSIRKHQKSGIWHIDISAPDGTRIRRSAETRDRKAAQEYHDRLKSDLWRQDKLGERADRTFEEAAVRFLQMCAGQRDYAG
KLRHVLYWRERFGAAPVRLLTAERIFDALPTHKLVNGAPTKLLAPGTRNRYINTIRRMLNLCLEWEWLDRVPKLRRFEEP
DIRVRWETPAVITRMIGALRLDWMRDAAIVAVATGMRESELFGLRLSQLDLAQCNAWITHAGAKSKRARSVPLNEDAMSV
LERRARAATDLIFTRGYTRDNGPPKLIQQIDKRDFARACAAAGMVDFNWHDLRHTWASWHVQHGTPLMVLKELGGWETVA
MVQKYAHLAPSHLAQHAANVNFLSKSLNQLDEATE

Sequences:

>Translated_355_residues
MSIRKHQKSGIWHIDISAPDGTRIRRSAETRDRKAAQEYHDRLKSDLWRQDKLGERADRTFEEAAVRFLQMCAGQRDYAG
KLRHVLYWRERFGAAPVRLLTAERIFDALPTHKLVNGAPTKLLAPGTRNRYINTIRRMLNLCLEWEWLDRVPKLRRFEEP
DIRVRWETPAVITRMIGALRLDWMRDAAIVAVATGMRESELFGLRLSQLDLAQCNAWITHAGAKSKRARSVPLNEDAMSV
LERRARAATDLIFTRGYTRDNGPPKLIQQIDKRDFARACAAAGMVDFNWHDLRHTWASWHVQHGTPLMVLKELGGWETVA
MVQKYAHLAPSHLAQHAANVNFLSKSLNQLDEATE
>Mature_354_residues
SIRKHQKSGIWHIDISAPDGTRIRRSAETRDRKAAQEYHDRLKSDLWRQDKLGERADRTFEEAAVRFLQMCAGQRDYAGK
LRHVLYWRERFGAAPVRLLTAERIFDALPTHKLVNGAPTKLLAPGTRNRYINTIRRMLNLCLEWEWLDRVPKLRRFEEPD
IRVRWETPAVITRMIGALRLDWMRDAAIVAVATGMRESELFGLRLSQLDLAQCNAWITHAGAKSKRARSVPLNEDAMSVL
ERRARAATDLIFTRGYTRDNGPPKLIQQIDKRDFARACAAAGMVDFNWHDLRHTWASWHVQHGTPLMVLKELGGWETVAM
VQKYAHLAPSHLAQHAANVNFLSKSLNQLDEATE

Specific function: Integrase from the cryptic lambdoic prophage DLP12. Integrase is necessary for integration of the phage into the host genome by site-specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1786748, Length=362, Percent_Identity=32.8729281767956, Blast_Score=197, Evalue=1e-51,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 40869; Mature: 40738

Theoretical pI: Translated: 10.50; Mature: 10.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIRKHQKSGIWHIDISAPDGTRIRRSAETRDRKAAQEYHDRLKSDLWRQDKLGERADRT
CCCCCHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
FEEAAVRFLQMCAGQRDYAGKLRHVLYWRERFGAAPVRLLTAERIFDALPTHKLVNGAPT
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHCCCCCC
KLLAPGTRNRYINTIRRMLNLCLEWEWLDRVPKLRRFEEPDIRVRWETPAVITRMIGALR
CEECCCCCHHHHHHHHHHHHHHHCHHHHHHCHHHHCCCCCCCEEEECCHHHHHHHHHHHH
LDWMRDAAIVAVATGMRESELFGLRLSQLDLAQCNAWITHAGAKSKRARSVPLNEDAMSV
HHHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHH
LERRARAATDLIFTRGYTRDNGPPKLIQQIDKRDFARACAAAGMVDFNWHDLRHTWASWH
HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHE
VQHGTPLMVLKELGGWETVAMVQKYAHLAPSHLAQHAANVNFLSKSLNQLDEATE
ECCCCHHHHHHHCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SIRKHQKSGIWHIDISAPDGTRIRRSAETRDRKAAQEYHDRLKSDLWRQDKLGERADRT
CCCCHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
FEEAAVRFLQMCAGQRDYAGKLRHVLYWRERFGAAPVRLLTAERIFDALPTHKLVNGAPT
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHCCCCCC
KLLAPGTRNRYINTIRRMLNLCLEWEWLDRVPKLRRFEEPDIRVRWETPAVITRMIGALR
CEECCCCCHHHHHHHHHHHHHHHCHHHHHHCHHHHCCCCCCCEEEECCHHHHHHHHHHHH
LDWMRDAAIVAVATGMRESELFGLRLSQLDLAQCNAWITHAGAKSKRARSVPLNEDAMSV
HHHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHH
LERRARAATDLIFTRGYTRDNGPPKLIQQIDKRDFARACAAAGMVDFNWHDLRHTWASWH
HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHE
VQHGTPLMVLKELGGWETVAMVQKYAHLAPSHLAQHAANVNFLSKSLNQLDEATE
ECCCCHHHHHHHCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2553674; 2183007; 9278503 [H]