| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is recD [H]
Identifier: 238026681
GI number: 238026681
Start: 1127462
End: 1129783
Strand: Direct
Name: recD [H]
Synonym: bglu_1g10360
Alternate gene names: 238026681
Gene position: 1127462-1129783 (Clockwise)
Preceding gene: 238026680
Following gene: 238026682
Centisome position: 28.86
GC content: 77.0
Gene sequence:
>2322_bases ATGAAGGATCTGACCGAACCGTTCGGCTTCGTCGGCGGCCTCGCCGAGCGCCTGCCCGAGCCTGCCGATTTCGGGCTCGC GCTCGCCGAGGGCTTCGCGCGCCGCATCGGGATGCTGTCGCGCCGGCTCGGCGCGCCCGCCGATGCGGCGCGCTGGGCCG CGCGCGCGGCGTTCGCGGCGAGCCGCGCCACCGCGGCGGGGCATGTCTGCATCGCGCTCGGTGCGCTCGCCGCGCGCTAC GCCGTGTCGCTCGACCAGGTGCGCGCCGAGCTGGCCGCGAGCGGTGTGACCGCGTTCGGCCGCGCGCCGCGCGGCGCCGA CTGTCCGTTGGTGGTGGACGCGCAGGGGCGGCTCTACCTCGCCCGCTATTTCGACTACGAGACGCGGCTCGCCGACGCGC TGGTCGCGCACGCCCGCGCGGCGCGTCCCGAGGCGGACGGCGCGCTGGCGCCGGCGCGCCTGCGCGAGAGCCTCGCGCGC TACTTCGCGCCGCCGCGCGAGGGCGAGATCGACTGGCAGCGCGTGGCGGCCGTGGTCGCGCTCGGCGGCCGCTTGACGAT CGTCAGCGGCGGGCCGGGCACCGGCAAGACCACCACCGTGGTCGGCGTGATCGCCTGCCTGATCGAGCTGCAGCCGGCGC TGCGCATCGCGCTCGCGGCGCCGACCGGCAAGGCCGCGCAGCGCATGCAGGAGGCGCTGCACGCGCGCGCGGCCGGGCTG CCCGCCGAGTTCGCCGCGCAACTGCCGCGCACCTCGTACACGCTGCACCGGCTGCTCGGCTGGCTGCCCGGCGGCCGGTT CCGCCACCACCGCGACAACCCGCTGCCCTACGATCTCGTCGTGGTCGACGAGGCATCGATGATCGACGTCGCGCTGGCGG CCCACCTGCTCGATGCGCTCGCGCCCGGCGCGCGGCTCGTGCTGCTCGGCGACAAGGACCAGCTCGCCGCCGTGGAGGCG GGCGCGGTGTTCGCCGAACTGAGCGCACGGCCGGCATTCAGCGCGGCCGGCTGCGAGCGGATCGCCGCGGCGCTCGGCGT GAGCCCGGCGGCCTTCGTCGCCGCGCTGCCCGACGAGGCACGCGCGACGGCGCCGGCCGGCGCAACGCAGGGCGCGAACC GGGCCGGTGCCGACGGCCGGCCGGCCTCGGCCGCCGCGCCGCGGCGGCGCGGGGCACGCCCGGCGCCGCCCGAGGCTGGC GGCATGCCGGTGCAGCGCTCGCTGTTCGATTTCGACGAGGTCGCCGCGAGCACCGATGCGTCCGCTTGCGCAGCCGAATC GGCGAGCCGGGCCGGCCAGGCAGGCTTCGCCGACGCGCCGCTCGAGGCGTGGATCGAACCCGACGAGCTGGCGTGGCTCG ATGCATGGCGCATCGACGAGGTCCAGGCGGCGCGGTTCGACGCGGGGCGCACCGGCATGCCCGCGGTGCCGGGGCCCGGG CGCGAGCCGGCAAGCCACGCCGATGCGCCCGCCGTGGGCGAGCCGCTCGCCGACTGCGTGGTCTGGCTCGAACGCAACTA CCGCTTCGGCCTCGATTCGCCGATCGGCCGGCTGTCGCTGGCGATCCGGCGCGGCGACGCGCAGGCCGCGCTCGACGCGC TATCGACGCAGGCCGACGCCGCCGCGCGGTTCATCGACGACGGCGGCGACGCGCTGGCCGCCGCCACCATCGAGCGCCTT GCCGACGGCTTCGCCGCCTATGGCCGGGCCCTGCGCGAGGTGCTCGCCGGCGGCGAGCCGGACCCGCTGCCGCTGTTCGA CGTGCTGAACCGCTTCCGGGTGCTCTGCGCGACGCGCACCGGCGCGCGCGGGGCCGACGAGATCAATCTGCGCGTGGCGG CGCTGGTGCGGCGCGCGGTGGGCGTGCCGCTTGCCGTGGGCGCGCACTGGTTCGCCGGCCGGCCGGTGATGGTCACGCGC AACGACTACGCGCTCGGCCTGTTCAATGGCGATATCGGTATCGCGCTGCACGACGCGCAGGGGGCGCTGCGGGTCTGGTT CCGGGGCGCCGACGGGCTCGCGCGCGCCGTCTCGCCGGCCGCGCTGCCGCCGCACGATACGGCCTTCGCGCTGACCGTCC ACAAGTCGCAGGGCTCGGAATTCGACGAGGCCGCGCTGGTGCTGCCGGCCGCGTTCGGCCGCGTGCTGTCGCGCGAACTG GTCTACACCGCCATCACGCGGGCCCGCTCGCGCGTGCAAGTGATCGGCCCGCGCGCCGTGCTCGCGCAGGCGATCGCGAC CCGCACGCAACGCGATTCGGGCCTCGCCGCGCGCATCGCCGATGCCGCGCAGGCGGCCGCCGAGGCCGAGGCACGGCACT AG
Upstream 100 bases:
>100_bases CCGACTGGCGCAGCGGCGGCGCGAGCGCCGGGGTGCATGCCGGACGCGCCTCGCGGGAGCTCGTCGAGGCGCTCGACGCC CTGATGCGCGAGGAGCGCGG
Downstream 100 bases:
>100_bases CCGCTCCGGCGGCGGCCTTGCGCTTTCCCACCCGTTGCCGTTCGGATTTTGCCGGGCCGCCGCTGGACCAGCCCGGCGGC GGATTTGCGCCCGCTTGCCT
Product: exodeoxyribonuclease V subunit alpha
Products: NA
Alternate protein names: Exodeoxyribonuclease V 67 kDa polypeptide [H]
Number of amino acids: Translated: 773; Mature: 773
Protein sequence:
>773_residues MKDLTEPFGFVGGLAERLPEPADFGLALAEGFARRIGMLSRRLGAPADAARWAARAAFAASRATAAGHVCIALGALAARY AVSLDQVRAELAASGVTAFGRAPRGADCPLVVDAQGRLYLARYFDYETRLADALVAHARAARPEADGALAPARLRESLAR YFAPPREGEIDWQRVAAVVALGGRLTIVSGGPGTGKTTTVVGVIACLIELQPALRIALAAPTGKAAQRMQEALHARAAGL PAEFAAQLPRTSYTLHRLLGWLPGGRFRHHRDNPLPYDLVVVDEASMIDVALAAHLLDALAPGARLVLLGDKDQLAAVEA GAVFAELSARPAFSAAGCERIAAALGVSPAAFVAALPDEARATAPAGATQGANRAGADGRPASAAAPRRRGARPAPPEAG GMPVQRSLFDFDEVAASTDASACAAESASRAGQAGFADAPLEAWIEPDELAWLDAWRIDEVQAARFDAGRTGMPAVPGPG REPASHADAPAVGEPLADCVVWLERNYRFGLDSPIGRLSLAIRRGDAQAALDALSTQADAAARFIDDGGDALAAATIERL ADGFAAYGRALREVLAGGEPDPLPLFDVLNRFRVLCATRTGARGADEINLRVAALVRRAVGVPLAVGAHWFAGRPVMVTR NDYALGLFNGDIGIALHDAQGALRVWFRGADGLARAVSPAALPPHDTAFALTVHKSQGSEFDEAALVLPAAFGRVLSREL VYTAITRARSRVQVIGPRAVLAQAIATRTQRDSGLAARIADAAQAAAEAEARH
Sequences:
>Translated_773_residues MKDLTEPFGFVGGLAERLPEPADFGLALAEGFARRIGMLSRRLGAPADAARWAARAAFAASRATAAGHVCIALGALAARY AVSLDQVRAELAASGVTAFGRAPRGADCPLVVDAQGRLYLARYFDYETRLADALVAHARAARPEADGALAPARLRESLAR YFAPPREGEIDWQRVAAVVALGGRLTIVSGGPGTGKTTTVVGVIACLIELQPALRIALAAPTGKAAQRMQEALHARAAGL PAEFAAQLPRTSYTLHRLLGWLPGGRFRHHRDNPLPYDLVVVDEASMIDVALAAHLLDALAPGARLVLLGDKDQLAAVEA GAVFAELSARPAFSAAGCERIAAALGVSPAAFVAALPDEARATAPAGATQGANRAGADGRPASAAAPRRRGARPAPPEAG GMPVQRSLFDFDEVAASTDASACAAESASRAGQAGFADAPLEAWIEPDELAWLDAWRIDEVQAARFDAGRTGMPAVPGPG REPASHADAPAVGEPLADCVVWLERNYRFGLDSPIGRLSLAIRRGDAQAALDALSTQADAAARFIDDGGDALAAATIERL ADGFAAYGRALREVLAGGEPDPLPLFDVLNRFRVLCATRTGARGADEINLRVAALVRRAVGVPLAVGAHWFAGRPVMVTR NDYALGLFNGDIGIALHDAQGALRVWFRGADGLARAVSPAALPPHDTAFALTVHKSQGSEFDEAALVLPAAFGRVLSREL VYTAITRARSRVQVIGPRAVLAQAIATRTQRDSGLAARIADAAQAAAEAEARH >Mature_773_residues MKDLTEPFGFVGGLAERLPEPADFGLALAEGFARRIGMLSRRLGAPADAARWAARAAFAASRATAAGHVCIALGALAARY AVSLDQVRAELAASGVTAFGRAPRGADCPLVVDAQGRLYLARYFDYETRLADALVAHARAARPEADGALAPARLRESLAR YFAPPREGEIDWQRVAAVVALGGRLTIVSGGPGTGKTTTVVGVIACLIELQPALRIALAAPTGKAAQRMQEALHARAAGL PAEFAAQLPRTSYTLHRLLGWLPGGRFRHHRDNPLPYDLVVVDEASMIDVALAAHLLDALAPGARLVLLGDKDQLAAVEA GAVFAELSARPAFSAAGCERIAAALGVSPAAFVAALPDEARATAPAGATQGANRAGADGRPASAAAPRRRGARPAPPEAG GMPVQRSLFDFDEVAASTDASACAAESASRAGQAGFADAPLEAWIEPDELAWLDAWRIDEVQAARFDAGRTGMPAVPGPG REPASHADAPAVGEPLADCVVWLERNYRFGLDSPIGRLSLAIRRGDAQAALDALSTQADAAARFIDDGGDALAAATIERL ADGFAAYGRALREVLAGGEPDPLPLFDVLNRFRVLCATRTGARGADEINLRVAALVRRAVGVPLAVGAHWFAGRPVMVTR NDYALGLFNGDIGIALHDAQGALRVWFRGADGLARAVSPAALPPHDTAFALTVHKSQGSEFDEAALVLPAAFGRVLSREL VYTAITRARSRVQVIGPRAVLAQAIATRTQRDSGLAARIADAAQAAAEAEARH
Specific function: Exhibits several catalytic activities, including ATP- dependent exonuclease, ATP-stimulated endonuclease, ATP-dependent unwinding and DNA-dependent ATPase activities. Strand cleavage occurs 5' to 3' during the unwinding of duplex DNA at CHI sequences, whi
COG id: COG0507
COG function: function code L; ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the recD family [H]
Homologues:
Organism=Escherichia coli, GI1789182, Length=288, Percent_Identity=44.4444444444444, Blast_Score=220, Evalue=2e-58,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003593 - InterPro: IPR007807 - InterPro: IPR006344 - InterPro: IPR000606 [H]
Pfam domain/function: PF05127 DUF699; PF01443 Viral_helicase1 [H]
EC number: =3.1.11.5 [H]
Molecular weight: Translated: 80478; Mature: 80478
Theoretical pI: Translated: 7.17; Mature: 7.17
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKDLTEPFGFVGGLAERLPEPADFGLALAEGFARRIGMLSRRLGAPADAARWAARAAFAA CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH SRATAAGHVCIALGALAARYAVSLDQVRAELAASGVTAFGRAPRGADCPLVVDAQGRLYL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCEEEECCCCEEE ARYFDYETRLADALVAHARAARPEADGALAPARLRESLARYFAPPREGEIDWQRVAAVVA EEHHCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH LGGRLTIVSGGPGTGKTTTVVGVIACLIELQPALRIALAAPTGKAAQRMQEALHARAAGL CCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCHHEEEEECCCCHHHHHHHHHHHHHHCCC PAEFAAQLPRTSYTLHRLLGWLPGGRFRHHRDNPLPYDLVVVDEASMIDVALAAHLLDAL CHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHH APGARLVLLGDKDQLAAVEAGAVFAELSARPAFSAAGCERIAAALGVSPAAFVAALPDEA CCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHEECCCHH RATAPAGATQGANRAGADGRPASAAAPRRRGARPAPPEAGGMPVQRSLFDFDEVAASTDA CCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHCHHHHHHCCCH SACAAESASRAGQAGFADAPLEAWIEPDELAWLDAWRIDEVQAARFDAGRTGMPAVPGPG HHHHHHHHHHCCCCCCCCCCHHHCCCCCCEEEECCCCCCHHHHHHCCCCCCCCCCCCCCC REPASHADAPAVGEPLADCVVWLERNYRFGLDSPIGRLSLAIRRGDAQAALDALSTQADA CCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHEEEEEECCCHHHHHHHHHHHHHH AARFIDDGGDALAAATIERLADGFAAYGRALREVLAGGEPDPLPLFDVLNRFRVLCATRT HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCC GARGADEINLRVAALVRRAVGVPLAVGAHWFAGRPVMVTRNDYALGLFNGDIGIALHDAQ CCCCCCHHHHHHHHHHHHHHCCCCEECCHHHCCCCEEEECCCEEEEEEECCEEEEEECCC GALRVWFRGADGLARAVSPAALPPHDTAFALTVHKSQGSEFDEAALVLPAAFGRVLSREL CEEEEEEECCCHHHHHCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH VYTAITRARSRVQVIGPRAVLAQAIATRTQRDSGLAARIADAAQAAAEAEARH HHHHHHHHHHHEEEECHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MKDLTEPFGFVGGLAERLPEPADFGLALAEGFARRIGMLSRRLGAPADAARWAARAAFAA CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH SRATAAGHVCIALGALAARYAVSLDQVRAELAASGVTAFGRAPRGADCPLVVDAQGRLYL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCEEEECCCCEEE ARYFDYETRLADALVAHARAARPEADGALAPARLRESLARYFAPPREGEIDWQRVAAVVA EEHHCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH LGGRLTIVSGGPGTGKTTTVVGVIACLIELQPALRIALAAPTGKAAQRMQEALHARAAGL CCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCHHEEEEECCCCHHHHHHHHHHHHHHCCC PAEFAAQLPRTSYTLHRLLGWLPGGRFRHHRDNPLPYDLVVVDEASMIDVALAAHLLDAL CHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHH APGARLVLLGDKDQLAAVEAGAVFAELSARPAFSAAGCERIAAALGVSPAAFVAALPDEA CCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHEECCCHH RATAPAGATQGANRAGADGRPASAAAPRRRGARPAPPEAGGMPVQRSLFDFDEVAASTDA CCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHCHHHHHHCCCH SACAAESASRAGQAGFADAPLEAWIEPDELAWLDAWRIDEVQAARFDAGRTGMPAVPGPG HHHHHHHHHHCCCCCCCCCCHHHCCCCCCEEEECCCCCCHHHHHHCCCCCCCCCCCCCCC REPASHADAPAVGEPLADCVVWLERNYRFGLDSPIGRLSLAIRRGDAQAALDALSTQADA CCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHEEEEEECCCHHHHHHHHHHHHHH AARFIDDGGDALAAATIERLADGFAAYGRALREVLAGGEPDPLPLFDVLNRFRVLCATRT HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCC GARGADEINLRVAALVRRAVGVPLAVGAHWFAGRPVMVTRNDYALGLFNGDIGIALHDAQ CCCCCCHHHHHHHHHHHHHHCCCCEECCHHHCCCCEEEECCCEEEEEEECCEEEEEECCC GALRVWFRGADGLARAVSPAALPPHDTAFALTVHKSQGSEFDEAALVLPAAFGRVLSREL CEEEEEEECCCHHHHHCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH VYTAITRARSRVQVIGPRAVLAQAIATRTQRDSGLAARIADAAQAAAEAEARH HHHHHHHHHHHEEEECHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 3537961; 9278503; 3537960 [H]