| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
Click here to switch to the map view.
The map label for this gene is ydjC [C]
Identifier: 238026650
GI number: 238026650
Start: 1081745
End: 1082656
Strand: Direct
Name: ydjC [C]
Synonym: bglu_1g10020
Alternate gene names: 238026650
Gene position: 1081745-1082656 (Clockwise)
Preceding gene: 238026649
Following gene: 238026651
Centisome position: 27.69
GC content: 75.99
Gene sequence:
>912_bases GTGGCGAATTCACCGGGGCCCGCGCGCGCGCTGATTGTCACCGCCGACGATTTCGGCCTGCATCCGCGCGTGAACGCGGC CGTCGAGCGCGCGCATCGCGACGGCGTGCTCACGGCCGCGAGCCTGATGGTGGCGGCGCCCGCCGCCCGGGACGCGATCG CGCGCGCGCGGCGGCTGCCGACGCTGGCCGTCGGCCTGCACCTGGTGCTCGCCGACGGCGCGGCGATGCTGCCGGCGCGC GAGATCGGCGCGCTGGTCGGGCCCGACGGCCGCTTCGGCGATGCGATGGCGAAGCACGGCTGCCGCTTCTTCTTCCTGCC CTGGGTGCGCGCGCAGTTGCGCCGCGAGATCCGCGCGCAGTTCGAGGCGTTCGCCGCGAGCGGGCTGCCGCTGGACCATG TCAACGCCCACAAGCATTTCCATCTGCACCCGACCGTGCTCGCGATGCTCGTCGAGATCGGCCGCGACTACGGGCTGCGC GCCGTGCGGCTGCCGTGCGCGCGCCGGGCGCCGGCCTGGCTGCGGCCGTGGATCGCGCTGGTGCGCGCGCGGCTCGATCG CGCGGGCCTCGCCCACAACGACTACCTCATCGGCATTGAACAGACGGGACACATGAACGAAGCAGCCTGGCTCGACGCAA TCGCCGCGCTGCCGGCGCATGGCGTCGGCGAAATCTATTGCCATCCGGCCGAGGCCGGCGAGGCGCCCATCACGCCGTCG ATGCGCGGCTACCGCCCGGCCGACGAACTGGCCGCGCTGCTCTCGCCGCGCGTGGCCGCCGCGCTCGACGCGGCCGGCCT CGCGCGCGGCGGGTACGCCGCGGTGTTCGGCCAGGGCCGGCCGCATCCGGCCGCCTCGCGCGGGGCGCCGGCAGCCACCG CCAGCCGCGCGGGAGGCGCCCGCCCGCGATGA
Upstream 100 bases:
>100_bases ATCGTGCGCGAGATGCTGTCGAGCTGGGACATGACGAAGCGCCGCCTGCGCGAAGGCGTCGAGTTCTTCCGCTTCCTGCG CGCGCACGAGGCCTGAGCGC
Downstream 100 bases:
>100_bases TGAAATGGCTGCATCGACTCGGCTGGCCGATCGGCATCGCGATCCTGCTCGTGCTGGCCCTGCACCAGGGCTGGCGCGAC GTGATCCACACCATCGGCCG
Product: YdjC family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 303; Mature: 302
Protein sequence:
>303_residues MANSPGPARALIVTADDFGLHPRVNAAVERAHRDGVLTAASLMVAAPAARDAIARARRLPTLAVGLHLVLADGAAMLPAR EIGALVGPDGRFGDAMAKHGCRFFFLPWVRAQLRREIRAQFEAFAASGLPLDHVNAHKHFHLHPTVLAMLVEIGRDYGLR AVRLPCARRAPAWLRPWIALVRARLDRAGLAHNDYLIGIEQTGHMNEAAWLDAIAALPAHGVGEIYCHPAEAGEAPITPS MRGYRPADELAALLSPRVAAALDAAGLARGGYAAVFGQGRPHPAASRGAPAATASRAGGARPR
Sequences:
>Translated_303_residues MANSPGPARALIVTADDFGLHPRVNAAVERAHRDGVLTAASLMVAAPAARDAIARARRLPTLAVGLHLVLADGAAMLPAR EIGALVGPDGRFGDAMAKHGCRFFFLPWVRAQLRREIRAQFEAFAASGLPLDHVNAHKHFHLHPTVLAMLVEIGRDYGLR AVRLPCARRAPAWLRPWIALVRARLDRAGLAHNDYLIGIEQTGHMNEAAWLDAIAALPAHGVGEIYCHPAEAGEAPITPS MRGYRPADELAALLSPRVAAALDAAGLARGGYAAVFGQGRPHPAASRGAPAATASRAGGARPR >Mature_302_residues ANSPGPARALIVTADDFGLHPRVNAAVERAHRDGVLTAASLMVAAPAARDAIARARRLPTLAVGLHLVLADGAAMLPARE IGALVGPDGRFGDAMAKHGCRFFFLPWVRAQLRREIRAQFEAFAASGLPLDHVNAHKHFHLHPTVLAMLVEIGRDYGLRA VRLPCARRAPAWLRPWIALVRARLDRAGLAHNDYLIGIEQTGHMNEAAWLDAIAALPAHGVGEIYCHPAEAGEAPITPSM RGYRPADELAALLSPRVAAALDAAGLARGGYAAVFGQGRPHPAASRGAPAATASRAGGARPR
Specific function: Unknown
COG id: COG3394
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0249 family [H]
Homologues:
Organism=Homo sapiens, GI63054868, Length=222, Percent_Identity=33.7837837837838, Blast_Score=79, Evalue=5e-15, Organism=Escherichia coli, GI1788028, Length=272, Percent_Identity=26.4705882352941, Blast_Score=65, Evalue=5e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002509 - InterPro: IPR006879 - InterPro: IPR022948 [H]
Pfam domain/function: PF04794 YdjC [H]
EC number: NA
Molecular weight: Translated: 32038; Mature: 31907
Theoretical pI: Translated: 10.85; Mature: 10.85
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MANSPGPARALIVTADDFGLHPRVNAAVERAHRDGVLTAASLMVAAPAARDAIARARRLP CCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCC TLAVGLHLVLADGAAMLPAREIGALVGPDGRFGDAMAKHGCRFFFLPWVRAQLRREIRAQ HHHHHHHHHEECCCHHCCHHHHHHEECCCCCCHHHHHHCCCEEEEHHHHHHHHHHHHHHH FEAFAASGLPLDHVNAHKHFHLHPTVLAMLVEIGRDYGLRAVRLPCARRAPAWLRPWIAL HHHHHHCCCCCCCCCCCCEEEECHHHHHHHHHHHHCCCCEEEECCHHHCCCHHHHHHHHH VRARLDRAGLAHNDYLIGIEQTGHMNEAAWLDAIAALPAHGVGEIYCHPAEAGEAPITPS HHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCC MRGYRPADELAALLSPRVAAALDAAGLARGGYAAVFGQGRPHPAASRGAPAATASRAGGA CCCCCCHHHHHHHHCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCHHHHCCCC RPR CCC >Mature Secondary Structure ANSPGPARALIVTADDFGLHPRVNAAVERAHRDGVLTAASLMVAAPAARDAIARARRLP CCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCC TLAVGLHLVLADGAAMLPAREIGALVGPDGRFGDAMAKHGCRFFFLPWVRAQLRREIRAQ HHHHHHHHHEECCCHHCCHHHHHHEECCCCCCHHHHHHCCCEEEEHHHHHHHHHHHHHHH FEAFAASGLPLDHVNAHKHFHLHPTVLAMLVEIGRDYGLRAVRLPCARRAPAWLRPWIAL HHHHHHCCCCCCCCCCCCEEEECHHHHHHHHHHHHCCCCEEEECCHHHCCCHHHHHHHHH VRARLDRAGLAHNDYLIGIEQTGHMNEAAWLDAIAALPAHGVGEIYCHPAEAGEAPITPS HHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCC MRGYRPADELAALLSPRVAAALDAAGLARGGYAAVFGQGRPHPAASRGAPAATASRAGGA CCCCCCHHHHHHHHCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCHHHHCCCC RPR CCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA