Definition Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence.
Accession NC_012724
Length 3,906,507

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The map label for this gene is ydjC [C]

Identifier: 238026650

GI number: 238026650

Start: 1081745

End: 1082656

Strand: Direct

Name: ydjC [C]

Synonym: bglu_1g10020

Alternate gene names: 238026650

Gene position: 1081745-1082656 (Clockwise)

Preceding gene: 238026649

Following gene: 238026651

Centisome position: 27.69

GC content: 75.99

Gene sequence:

>912_bases
GTGGCGAATTCACCGGGGCCCGCGCGCGCGCTGATTGTCACCGCCGACGATTTCGGCCTGCATCCGCGCGTGAACGCGGC
CGTCGAGCGCGCGCATCGCGACGGCGTGCTCACGGCCGCGAGCCTGATGGTGGCGGCGCCCGCCGCCCGGGACGCGATCG
CGCGCGCGCGGCGGCTGCCGACGCTGGCCGTCGGCCTGCACCTGGTGCTCGCCGACGGCGCGGCGATGCTGCCGGCGCGC
GAGATCGGCGCGCTGGTCGGGCCCGACGGCCGCTTCGGCGATGCGATGGCGAAGCACGGCTGCCGCTTCTTCTTCCTGCC
CTGGGTGCGCGCGCAGTTGCGCCGCGAGATCCGCGCGCAGTTCGAGGCGTTCGCCGCGAGCGGGCTGCCGCTGGACCATG
TCAACGCCCACAAGCATTTCCATCTGCACCCGACCGTGCTCGCGATGCTCGTCGAGATCGGCCGCGACTACGGGCTGCGC
GCCGTGCGGCTGCCGTGCGCGCGCCGGGCGCCGGCCTGGCTGCGGCCGTGGATCGCGCTGGTGCGCGCGCGGCTCGATCG
CGCGGGCCTCGCCCACAACGACTACCTCATCGGCATTGAACAGACGGGACACATGAACGAAGCAGCCTGGCTCGACGCAA
TCGCCGCGCTGCCGGCGCATGGCGTCGGCGAAATCTATTGCCATCCGGCCGAGGCCGGCGAGGCGCCCATCACGCCGTCG
ATGCGCGGCTACCGCCCGGCCGACGAACTGGCCGCGCTGCTCTCGCCGCGCGTGGCCGCCGCGCTCGACGCGGCCGGCCT
CGCGCGCGGCGGGTACGCCGCGGTGTTCGGCCAGGGCCGGCCGCATCCGGCCGCCTCGCGCGGGGCGCCGGCAGCCACCG
CCAGCCGCGCGGGAGGCGCCCGCCCGCGATGA

Upstream 100 bases:

>100_bases
ATCGTGCGCGAGATGCTGTCGAGCTGGGACATGACGAAGCGCCGCCTGCGCGAAGGCGTCGAGTTCTTCCGCTTCCTGCG
CGCGCACGAGGCCTGAGCGC

Downstream 100 bases:

>100_bases
TGAAATGGCTGCATCGACTCGGCTGGCCGATCGGCATCGCGATCCTGCTCGTGCTGGCCCTGCACCAGGGCTGGCGCGAC
GTGATCCACACCATCGGCCG

Product: YdjC family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 303; Mature: 302

Protein sequence:

>303_residues
MANSPGPARALIVTADDFGLHPRVNAAVERAHRDGVLTAASLMVAAPAARDAIARARRLPTLAVGLHLVLADGAAMLPAR
EIGALVGPDGRFGDAMAKHGCRFFFLPWVRAQLRREIRAQFEAFAASGLPLDHVNAHKHFHLHPTVLAMLVEIGRDYGLR
AVRLPCARRAPAWLRPWIALVRARLDRAGLAHNDYLIGIEQTGHMNEAAWLDAIAALPAHGVGEIYCHPAEAGEAPITPS
MRGYRPADELAALLSPRVAAALDAAGLARGGYAAVFGQGRPHPAASRGAPAATASRAGGARPR

Sequences:

>Translated_303_residues
MANSPGPARALIVTADDFGLHPRVNAAVERAHRDGVLTAASLMVAAPAARDAIARARRLPTLAVGLHLVLADGAAMLPAR
EIGALVGPDGRFGDAMAKHGCRFFFLPWVRAQLRREIRAQFEAFAASGLPLDHVNAHKHFHLHPTVLAMLVEIGRDYGLR
AVRLPCARRAPAWLRPWIALVRARLDRAGLAHNDYLIGIEQTGHMNEAAWLDAIAALPAHGVGEIYCHPAEAGEAPITPS
MRGYRPADELAALLSPRVAAALDAAGLARGGYAAVFGQGRPHPAASRGAPAATASRAGGARPR
>Mature_302_residues
ANSPGPARALIVTADDFGLHPRVNAAVERAHRDGVLTAASLMVAAPAARDAIARARRLPTLAVGLHLVLADGAAMLPARE
IGALVGPDGRFGDAMAKHGCRFFFLPWVRAQLRREIRAQFEAFAASGLPLDHVNAHKHFHLHPTVLAMLVEIGRDYGLRA
VRLPCARRAPAWLRPWIALVRARLDRAGLAHNDYLIGIEQTGHMNEAAWLDAIAALPAHGVGEIYCHPAEAGEAPITPSM
RGYRPADELAALLSPRVAAALDAAGLARGGYAAVFGQGRPHPAASRGAPAATASRAGGARPR

Specific function: Unknown

COG id: COG3394

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0249 family [H]

Homologues:

Organism=Homo sapiens, GI63054868, Length=222, Percent_Identity=33.7837837837838, Blast_Score=79, Evalue=5e-15,
Organism=Escherichia coli, GI1788028, Length=272, Percent_Identity=26.4705882352941, Blast_Score=65, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002509
- InterPro:   IPR006879
- InterPro:   IPR022948 [H]

Pfam domain/function: PF04794 YdjC [H]

EC number: NA

Molecular weight: Translated: 32038; Mature: 31907

Theoretical pI: Translated: 10.85; Mature: 10.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANSPGPARALIVTADDFGLHPRVNAAVERAHRDGVLTAASLMVAAPAARDAIARARRLP
CCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCC
TLAVGLHLVLADGAAMLPAREIGALVGPDGRFGDAMAKHGCRFFFLPWVRAQLRREIRAQ
HHHHHHHHHEECCCHHCCHHHHHHEECCCCCCHHHHHHCCCEEEEHHHHHHHHHHHHHHH
FEAFAASGLPLDHVNAHKHFHLHPTVLAMLVEIGRDYGLRAVRLPCARRAPAWLRPWIAL
HHHHHHCCCCCCCCCCCCEEEECHHHHHHHHHHHHCCCCEEEECCHHHCCCHHHHHHHHH
VRARLDRAGLAHNDYLIGIEQTGHMNEAAWLDAIAALPAHGVGEIYCHPAEAGEAPITPS
HHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCC
MRGYRPADELAALLSPRVAAALDAAGLARGGYAAVFGQGRPHPAASRGAPAATASRAGGA
CCCCCCHHHHHHHHCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCHHHHCCCC
RPR
CCC
>Mature Secondary Structure 
ANSPGPARALIVTADDFGLHPRVNAAVERAHRDGVLTAASLMVAAPAARDAIARARRLP
CCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCC
TLAVGLHLVLADGAAMLPAREIGALVGPDGRFGDAMAKHGCRFFFLPWVRAQLRREIRAQ
HHHHHHHHHEECCCHHCCHHHHHHEECCCCCCHHHHHHCCCEEEEHHHHHHHHHHHHHHH
FEAFAASGLPLDHVNAHKHFHLHPTVLAMLVEIGRDYGLRAVRLPCARRAPAWLRPWIAL
HHHHHHCCCCCCCCCCCCEEEECHHHHHHHHHHHHCCCCEEEECCHHHCCCHHHHHHHHH
VRARLDRAGLAHNDYLIGIEQTGHMNEAAWLDAIAALPAHGVGEIYCHPAEAGEAPITPS
HHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCC
MRGYRPADELAALLSPRVAAALDAAGLARGGYAAVFGQGRPHPAASRGAPAATASRAGGA
CCCCCCHHHHHHHHCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCHHHHCCCC
RPR
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA