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The map label for this gene is rpoE [H]

Identifier: 238026610

GI number: 238026610

Start: 1032498

End: 1033097

Strand: Direct

Name: rpoE [H]

Synonym: bglu_1g09570

Alternate gene names: 238026610

Gene position: 1032498-1033097 (Clockwise)

Preceding gene: 339905960

Following gene: 238026611

Centisome position: 26.43

GC content: 60.33

Gene sequence:

>600_bases
GTGAGTGAAAAAGAAATCGATCAGGCCCTGGTCGAGCGCGTACAGAAAGGTGACAAGGCGGCGTTCGAACTCCTGGTCTC
CAAATACCACCGCAAGATCCTCCGGCTGATCTCGCGCCTCGTGCGTGACCCCGCCGAGGTCGAGGACGTGGCCCAGGACG
CGTTCATCAAGGCCTACCGGGCGTTGCCGCAATTCCGCGGCGAATCCGCGTTCTACACATGGTTGTATCGGATTGCCGTC
AACACGGCGAAGAACTACCTGGCAACCCAGGGGCGCCGCGCACCGACCTCGACTGAAGCCGATGCCGAAGAGGCTGAAAC
TTTCTCCGATGCCGACCAACTAAGGGATATCAACACGCCCGAGTCGATGTTGATGAGCAAGCAGATCGCCGAAACGGTGA
ATGCGGCGATGGCGCTGTTGCCCGAGGAATTGCGCACGGCCATCACGCTGCGGGAAATCGAGGGTCTGAGTTACGAGGAA
ATCGCGGAAATGATGGATTGTCCCATCGGCACCGTGCGTTCGCGTATCTTCCGGGCCCGCGAAGCGATCGCCAACAAGTT
GCGGCCGCTGCTCGACACGCCGGAAGGCAAGCGCTGGTAA

Upstream 100 bases:

>100_bases
GGCTAGGCCGGCAGCACGCGCCGCGCGCGTTTCGCGGCGCGCCAGGTGGCGTTGCTACAATAGCGCTCCGCGTTGCATCC
CTAGTTAACGGATTTGTCAG

Downstream 100 bases:

>100_bases
GCGCTTGCCCGGCGGCAGGATCGGCACGGGGTCCAGTTACAGATTGAGTCGTGGTCACGACGGGGTATCGGAAGATGGGG
AGCATCATGGGGTCGGTCTC

Product: RNA polymerase sigma factor RpoE

Products: NA

Alternate protein names: Sigma-24 [H]

Number of amino acids: Translated: 199; Mature: 198

Protein sequence:

>199_residues
MSEKEIDQALVERVQKGDKAAFELLVSKYHRKILRLISRLVRDPAEVEDVAQDAFIKAYRALPQFRGESAFYTWLYRIAV
NTAKNYLATQGRRAPTSTEADAEEAETFSDADQLRDINTPESMLMSKQIAETVNAAMALLPEELRTAITLREIEGLSYEE
IAEMMDCPIGTVRSRIFRAREAIANKLRPLLDTPEGKRW

Sequences:

>Translated_199_residues
MSEKEIDQALVERVQKGDKAAFELLVSKYHRKILRLISRLVRDPAEVEDVAQDAFIKAYRALPQFRGESAFYTWLYRIAV
NTAKNYLATQGRRAPTSTEADAEEAETFSDADQLRDINTPESMLMSKQIAETVNAAMALLPEELRTAITLREIEGLSYEE
IAEMMDCPIGTVRSRIFRAREAIANKLRPLLDTPEGKRW
>Mature_198_residues
SEKEIDQALVERVQKGDKAAFELLVSKYHRKILRLISRLVRDPAEVEDVAQDAFIKAYRALPQFRGESAFYTWLYRIAVN
TAKNYLATQGRRAPTSTEADAEEAETFSDADQLRDINTPESMLMSKQIAETVNAAMALLPEELRTAITLREIEGLSYEEI
AEMMDCPIGTVRSRIFRAREAIANKLRPLLDTPEGKRW

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788926, Length=191, Percent_Identity=62.303664921466, Blast_Score=241, Evalue=2e-65,

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR014286
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 22668; Mature: 22537

Theoretical pI: Translated: 5.04; Mature: 5.04

Prosite motif: PS01063 SIGMA70_ECF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEKEIDQALVERVQKGDKAAFELLVSKYHRKILRLISRLVRDPAEVEDVAQDAFIKAYR
CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
ALPQFRGESAFYTWLYRIAVNTAKNYLATQGRRAPTSTEADAEEAETFSDADQLRDINTP
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCH
ESMLMSKQIAETVNAAMALLPEELRTAITLREIEGLSYEEIAEMMDCPIGTVRSRIFRAR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHH
EAIANKLRPLLDTPEGKRW
HHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
SEKEIDQALVERVQKGDKAAFELLVSKYHRKILRLISRLVRDPAEVEDVAQDAFIKAYR
CHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
ALPQFRGESAFYTWLYRIAVNTAKNYLATQGRRAPTSTEADAEEAETFSDADQLRDINTP
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCH
ESMLMSKQIAETVNAAMALLPEELRTAITLREIEGLSYEEIAEMMDCPIGTVRSRIFRAR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHH
EAIANKLRPLLDTPEGKRW
HHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]