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The map label for this gene is rarD [H]

Identifier: 238025516

GI number: 238025516

Start: 2745617

End: 2746513

Strand: Reverse

Name: rarD [H]

Synonym: bglu_2g22120

Alternate gene names: 238025516

Gene position: 2746513-2745617 (Counterclockwise)

Preceding gene: 238025517

Following gene: 238025515

Centisome position: 97.14

GC content: 71.79

Gene sequence:

>897_bases
ATGATTCACGATCATCCGGACGCGCAGCGCGGCGTCACGCTGTCGGTCGCGGCGTCCGCGCTGTTCGCGCTGCTGTCGGT
CTACGCGAAGCTGCTCGCGCCGCTCACCGGCCTCGACATCTTCGCCTGGCGCATCGTCTGGACGCTGCCGGGCGCGCTGC
TGCTGGTCGCGATGCGCGGCCGCTTCGGCGAGCTGGCCGGCTTCGTGCGGCGCGTGTGCGGCACGCGCCGCCTCGCGCTC
GCGGTCGGCGCCGGGGCGGCCATGCTCGGCGTGCAGCTGTGGTTGTTCCTGTGGGCCCCGCTGCACGGGCGCATGCTCGA
GGTGTCGCTCGGCTATTTCCTGATGCCGCTCACGATGGTGCTGGTGGGCCGCTTCGTCTATCGCGAGTCGCTGTCGCTGC
TGCAGTGGGGCTCGATCGCCTGCGCGGCGGCCGGCGTGGCGCACGAGGTGTGGGTCACGCGTGCGTTCGCGTGGCCGACG
CTGGTGGTCGCGCTCGGTTATCCGCCTTACTTCATGCTGCGCCGTCGCATCGAGGTCGAGCCGCTCACGCTGTTCGCGGT
CGAGATGATCGCGCTGCTGCCGGTGGCGCTCGTCACGCTCGCGGCGCTCGGCACGCCGGTGGGCGGCCACCCGGTGCTCT
GGGCGCTCTGGCTGCCGGGGCTCGGGGTGCTCAGCACGCTCGCGCTCGGCTGCTACCTGAAGGCGAGCCGGATGCTGCCG
ATGGCGCTGTTCGGCATCCTCGGCTACGTCGAGCCGGTGCTGATCGTGGCGGCCGCCGTGCTGCTGCTCGGCGAATCGCT
GAGCATGCAGCAGCTCGGCACCTACGGCCCGATCTGGCTCGCCGTCGCGCTGACGGCATGGCACAGCTATCTGCGGATGC
GCCGCGTGCGCGCCTGA

Upstream 100 bases:

>100_bases
CACGGGCCGCCGGCCGCGCGCGTGAGCGAGGTCGAATTCGAGGAGCGCCAGACCGACAAGCGCTTCGAGCGTTTCCAGCA
GCATTGAGGCGGCGCGGCAG

Downstream 100 bases:

>100_bases
GCCTTTGCGCCTGCGCTTTCGCCGGCTGCCGCAGCCGGCGCTCCCGGCAAGTTCCAGGCGCGTGGCGCGAAACATGGCGC
GCGCCGGCCGATCCCGCCGG

Product: RarD protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 298; Mature: 298

Protein sequence:

>298_residues
MIHDHPDAQRGVTLSVAASALFALLSVYAKLLAPLTGLDIFAWRIVWTLPGALLLVAMRGRFGELAGFVRRVCGTRRLAL
AVGAGAAMLGVQLWLFLWAPLHGRMLEVSLGYFLMPLTMVLVGRFVYRESLSLLQWGSIACAAAGVAHEVWVTRAFAWPT
LVVALGYPPYFMLRRRIEVEPLTLFAVEMIALLPVALVTLAALGTPVGGHPVLWALWLPGLGVLSTLALGCYLKASRMLP
MALFGILGYVEPVLIVAAAVLLLGESLSMQQLGTYGPIWLAVALTAWHSYLRMRRVRA

Sequences:

>Translated_298_residues
MIHDHPDAQRGVTLSVAASALFALLSVYAKLLAPLTGLDIFAWRIVWTLPGALLLVAMRGRFGELAGFVRRVCGTRRLAL
AVGAGAAMLGVQLWLFLWAPLHGRMLEVSLGYFLMPLTMVLVGRFVYRESLSLLQWGSIACAAAGVAHEVWVTRAFAWPT
LVVALGYPPYFMLRRRIEVEPLTLFAVEMIALLPVALVTLAALGTPVGGHPVLWALWLPGLGVLSTLALGCYLKASRMLP
MALFGILGYVEPVLIVAAAVLLLGESLSMQQLGTYGPIWLAVALTAWHSYLRMRRVRA
>Mature_298_residues
MIHDHPDAQRGVTLSVAASALFALLSVYAKLLAPLTGLDIFAWRIVWTLPGALLLVAMRGRFGELAGFVRRVCGTRRLAL
AVGAGAAMLGVQLWLFLWAPLHGRMLEVSLGYFLMPLTMVLVGRFVYRESLSLLQWGSIACAAAGVAHEVWVTRAFAWPT
LVVALGYPPYFMLRRRIEVEPLTLFAVEMIALLPVALVTLAALGTPVGGHPVLWALWLPGLGVLSTLALGCYLKASRMLP
MALFGILGYVEPVLIVAAAVLLLGESLSMQQLGTYGPIWLAVALTAWHSYLRMRRVRA

Specific function: Unknown

COG id: COG2962

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the eamA transporter family [H]

Homologues:

Organism=Escherichia coli, GI48994976, Length=296, Percent_Identity=27.027027027027, Blast_Score=111, Evalue=5e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620
- InterPro:   IPR004626 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 32412; Mature: 32412

Theoretical pI: Translated: 10.29; Mature: 10.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIHDHPDAQRGVTLSVAASALFALLSVYAKLLAPLTGLDIFAWRIVWTLPGALLLVAMRG
CCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHC
RFGELAGFVRRVCGTRRLALAVGAGAAMLGVQLWLFLWAPLHGRMLEVSLGYFLMPLTMV
CHHHHHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
LVGRFVYRESLSLLQWGSIACAAAGVAHEVWVTRAFAWPTLVVALGYPPYFMLRRRIEVE
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCC
PLTLFAVEMIALLPVALVTLAALGTPVGGHPVLWALWLPGLGVLSTLALGCYLKASRMLP
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
MALFGILGYVEPVLIVAAAVLLLGESLSMQQLGTYGPIWLAVALTAWHSYLRMRRVRA
HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MIHDHPDAQRGVTLSVAASALFALLSVYAKLLAPLTGLDIFAWRIVWTLPGALLLVAMRG
CCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHC
RFGELAGFVRRVCGTRRLALAVGAGAAMLGVQLWLFLWAPLHGRMLEVSLGYFLMPLTMV
CHHHHHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
LVGRFVYRESLSLLQWGSIACAAAGVAHEVWVTRAFAWPTLVVALGYPPYFMLRRRIEVE
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCC
PLTLFAVEMIALLPVALVTLAALGTPVGGHPVLWALWLPGLGVLSTLALGCYLKASRMLP
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
MALFGILGYVEPVLIVAAAVLLLGESLSMQQLGTYGPIWLAVALTAWHSYLRMRRVRA
HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]