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The map label for this gene is nahR [H]

Identifier: 238025341

GI number: 238025341

Start: 2503308

End: 2504243

Strand: Reverse

Name: nahR [H]

Synonym: bglu_2g20150

Alternate gene names: 238025341

Gene position: 2504243-2503308 (Counterclockwise)

Preceding gene: 238025349

Following gene: 238025339

Centisome position: 88.57

GC content: 64.0

Gene sequence:

>936_bases
TTGAACAAGACGAATGCCCCTGATCTCAATCTTCTGATTGTGCTAGACGCCTTGCTGTCCGAGAACAGTGTCGCGCGGGC
AGCGAAGGCGCTCGGCCTAAGCTCCTCGGCGTTGAGCCGGTCCCTGGCCCGTCTGAGGGCGACTACGGGAGATCAACTGC
TCGTCAGGGCCGGACGCGATCTGGTGCCGACGCCTCGTGCGCTCGAACTGCGTGCGCAGGTTCGCGCGCTGGTGGACGGG
GCCCACGCCGTGCTGTGTCCGTGCAACAGCGCGGACCTCGGCGAGCTCGAGCGCACGTTCTCGATTCGTGCCAACGAAGG
GTTCGTCGATACCTTCGGGGCCGAACTGATAGCGCTGGTCACGGCAACCGCGCCGAACGTCCGGCTGCGTTTCGCGCCGA
AGCCGGATAAGAACGTCGAGGCCTTGCGCACGGGGGCGGTCGATCTCGAAGTCGGCGTGGTGGGCCATACCGGCCCCGAA
CTGCGCGTACAGGCGCTATTCCGCGACCGCTTCATCGGCGTCGTGCGGGCGGATCACCCGCTTGCGGGGGAGCACGTGAC
GCCACACCGATATGCCTCTTTCGGCCATATCAGCGTGTCGCGGCGGGGGCAGGTCAGCGGTCCCATCGACAACCTGCTCG
AGACCCTAAGACTGCAACGAACCGTTGCGGCGGTCGTGTCCAGCTTTCCCGCCGCATTGTCGCTGGCGCGCGATTCGAAT
TTGATCGCCAATGTTCCGGAGCGGCAGACCAGGAAATCGCGGGGGGGGATGCTCAGCTTCACGTTGCCGGTGTTGACCAC
CACGCTGACGATTTCACAGATCTGGCATCCGCGCTTCGATAACGACCCCGCGCATCGCTGGCTGCGCAGTTGCCTGCGAC
TTGTTTGTGCAAATCAGGAATCGTCGTTGTACGATGTTGGCGCGGCTGAACCATGA

Upstream 100 bases:

>100_bases
GCTGGCGTTCCCGTCCATCGTCGGGCGCTGCATGGCTATCACGCTGACTGCGTGGTACGCGTCAATCGCAAGTCCAAGCG
GTATCCCGGAGCGACACCAA

Downstream 100 bases:

>100_bases
CGGTGCACACGCCGCGGCACGCGCGTCAACTGCACGAATAAATTGAGCGTGACGCATCTTCCGGGGGGGAGGGCAACTCG
GTATGCTCGGCCTTATCCGC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 311; Mature: 311

Protein sequence:

>311_residues
MNKTNAPDLNLLIVLDALLSENSVARAAKALGLSSSALSRSLARLRATTGDQLLVRAGRDLVPTPRALELRAQVRALVDG
AHAVLCPCNSADLGELERTFSIRANEGFVDTFGAELIALVTATAPNVRLRFAPKPDKNVEALRTGAVDLEVGVVGHTGPE
LRVQALFRDRFIGVVRADHPLAGEHVTPHRYASFGHISVSRRGQVSGPIDNLLETLRLQRTVAAVVSSFPAALSLARDSN
LIANVPERQTRKSRGGMLSFTLPVLTTTLTISQIWHPRFDNDPAHRWLRSCLRLVCANQESSLYDVGAAEP

Sequences:

>Translated_311_residues
MNKTNAPDLNLLIVLDALLSENSVARAAKALGLSSSALSRSLARLRATTGDQLLVRAGRDLVPTPRALELRAQVRALVDG
AHAVLCPCNSADLGELERTFSIRANEGFVDTFGAELIALVTATAPNVRLRFAPKPDKNVEALRTGAVDLEVGVVGHTGPE
LRVQALFRDRFIGVVRADHPLAGEHVTPHRYASFGHISVSRRGQVSGPIDNLLETLRLQRTVAAVVSSFPAALSLARDSN
LIANVPERQTRKSRGGMLSFTLPVLTTTLTISQIWHPRFDNDPAHRWLRSCLRLVCANQESSLYDVGAAEP
>Mature_311_residues
MNKTNAPDLNLLIVLDALLSENSVARAAKALGLSSSALSRSLARLRATTGDQLLVRAGRDLVPTPRALELRAQVRALVDG
AHAVLCPCNSADLGELERTFSIRANEGFVDTFGAELIALVTATAPNVRLRFAPKPDKNVEALRTGAVDLEVGVVGHTGPE
LRVQALFRDRFIGVVRADHPLAGEHVTPHRYASFGHISVSRRGQVSGPIDNLLETLRLQRTVAAVVSSFPAALSLARDSN
LIANVPERQTRKSRGGMLSFTLPVLTTTLTISQIWHPRFDNDPAHRWLRSCLRLVCANQESSLYDVGAAEP

Specific function: Regulates the expression of the naphthalene (nahA-F) and salicylate (nahG-M) metabolism genes [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081684, Length=295, Percent_Identity=27.1186440677966, Blast_Score=108, Evalue=5e-25,
Organism=Escherichia coli, GI1790147, Length=305, Percent_Identity=23.9344262295082, Blast_Score=73, Evalue=2e-14,

Paralogues:

None

Copy number: 825 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33621; Mature: 33621

Theoretical pI: Translated: 9.82; Mature: 9.82

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKTNAPDLNLLIVLDALLSENSVARAAKALGLSSSALSRSLARLRATTGDQLLVRAGRD
CCCCCCCCCCHHEEHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHCCCC
LVPTPRALELRAQVRALVDGAHAVLCPCNSADLGELERTFSIRANEGFVDTFGAELIALV
CCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHEEEEECCCCCHHHHHHHHHHHH
TATAPNVRLRFAPKPDKNVEALRTGAVDLEVGVVGHTGPELRVQALFRDRFIGVVRADHP
HCCCCCEEEEECCCCCCCHHHHHCCCEEEEEEEEECCCCHHHHHHHHHHHHEEEEECCCC
LAGEHVTPHRYASFGHISVSRRGQVSGPIDNLLETLRLQRTVAAVVSSFPAALSLARDSN
CCCCCCCCHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
LIANVPERQTRKSRGGMLSFTLPVLTTTLTISQIWHPRFDNDPAHRWLRSCLRLVCANQE
CEECCCHHHHHHHCCCEEEEEHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCC
SSLYDVGAAEP
CCEECCCCCCC
>Mature Secondary Structure
MNKTNAPDLNLLIVLDALLSENSVARAAKALGLSSSALSRSLARLRATTGDQLLVRAGRD
CCCCCCCCCCHHEEHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHCCCC
LVPTPRALELRAQVRALVDGAHAVLCPCNSADLGELERTFSIRANEGFVDTFGAELIALV
CCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHEEEEECCCCCHHHHHHHHHHHH
TATAPNVRLRFAPKPDKNVEALRTGAVDLEVGVVGHTGPELRVQALFRDRFIGVVRADHP
HCCCCCEEEEECCCCCCCHHHHHCCCEEEEEEEEECCCCHHHHHHHHHHHHEEEEECCCC
LAGEHVTPHRYASFGHISVSRRGQVSGPIDNLLETLRLQRTVAAVVSSFPAALSLARDSN
CCCCCCCCHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
LIANVPERQTRKSRGGMLSFTLPVLTTTLTISQIWHPRFDNDPAHRWLRSCLRLVCANQE
CEECCCHHHHHHHCCCEEEEEHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCC
SSLYDVGAAEP
CCEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2703465; 2848005 [H]