Definition | Burkholderia glumae BGR1 chromosome chromosome 2, complete sequence. |
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Accession | NC_012721 |
Length | 2,827,333 |
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The map label for this gene is 238025276
Identifier: 238025276
GI number: 238025276
Start: 2423156
End: 2424274
Strand: Reverse
Name: 238025276
Synonym: bglu_2g19500
Alternate gene names: NA
Gene position: 2424274-2423156 (Counterclockwise)
Preceding gene: 238025277
Following gene: 238025272
Centisome position: 85.74
GC content: 67.74
Gene sequence:
>1119_bases ATGAGCATTCCCGAGGAGGATCGTGTACTGACATCGCGGGACGTGGCCCATCGGCTCGGAGTGTCCATCAAGACCGCGCA GGGTTGGATCGAGGCCAACGTTCCGCAGTCCTGGAAAACGCCCGGGGGGCATCGCCGTGCCCACGAGCGCGACGTGCTTG CCGCGCAAATGCGCATGGCCGCGCCGCCGGACCATGACCTCGCGCCGGTGCCGGTCGCCTTCCTGACGAGCGAGTCGACC TGGCGGCACTTTCGCGAACGGCTGGCCGACGTGGACGCCAGGTTCGAGCACGTCGGCGACGCCCTGACCGCCTTGTCCAC CGTCGGCCGCATCCAGCCCGCCGTGGTGGTGATCGAGATCTCCGCCACCGACTGGGATCGCGGCCTGGTGGTCAATCATC TGCTATCGGACTCGCACCTGGCCCATGTGGCCGTGATTGCGCTATGCGACGAGCGCGGCCGCGCCCATCTTGCGACGGCT GCGTCGGCGCGTCTGACCGTGCTTGCCCGCGACGCCGAGGCGGCCGCCGCCGAGGCCGTGCGCGCGGCGCTGGTTCCGTT CCTCGATGGCGCGTCCGGCGGCGCGGAGGCGGGCTCGGCCGTCCCCTATCCGGTGGCGCGCAACGAGGCCAAACGCCTGC TTGCCCTGCGGCGTTCCGGCTTGGTGGACAGCCCCTACGAGGACATATTCGACGATACGGCGAGACTGGCGGCCCGCGTG TTTTCGGCGCCGATTGCGCTGATCAGCCTCGTGACCACCGACCGTCAGTGGTTCAAGGCCCATCATGGGCTGGGCGTCAG GGAGACGCCGCGAATCTGGGCATTCTGCAATTACACCATCCTGGGCGATTCGTTCGTGGTGGAAGACGCCCAGCAGGATT CACGCTTCAAGGACAACGTACTGGTCACGGGCGCGCCGCAGATACGGTTTTATGCGGGTGCGCCGCTGCGCGACAGCGAC GGCTATGCGCTCGGATCGCTCTGCGTCATCGACCAGGTGCCTCGCAAGGCCAGTGACACGGGGATGGATGCGCTCCGGCT GCTGGCGGATCTGATCTCGTCGCGTATCTGCCTGGCGCAGAAGCTGCGGGAGCAACTGCAGCGCCATCCTTCCGCCTAG
Upstream 100 bases:
>100_bases GGAGGCGTCGTCTATCGGGTCGATAGGAAAATCGTGTTGCAACGATTCGATGCCTCTAGATAGTATCCCAGCCAAATATT CCATTATTGAGACTGTGTTC
Downstream 100 bases:
>100_bases CGCGGCCAACACGAGCCGGCAGCGAAGCGTAAGCGGATGGCGCCGGCGGCAGCGGCGGGCATCGGTGCGCGATTCCCGGC AAGACCGAAGACGAGGCAGC
Product: putative GAF sensor protein
Products: NA
Alternate protein names: Signal Transduction Histidine Kinase; Diguanylate Cyclase; Multi-Sensor Hybrid Histidine Kinase; GAF Sensor Protein; Multi-Sensor Signal Transduction Histidine Kinase; Two-Component Hybrid Sensor And Regulator; GGDEF Domain-Containing Protein; Sensor Protein; GAF Domain-Containing Protein; Histidine Kinase Response Regulator Hybrid Protein; Diguanylate Cyclase With PAS/PAC Sensor; Histidine Kinase-Response Regulator Hybrid Protein; Sensory Box/GGDEF Family Protein; Sensor Histidine Kinase; PAS Sensor Protein; GGDEF Domain Protein; GAF Sensor Signal Transduction Histidine Kinase; PAS Fold Family; Diguanylate Cyclase With PAS/PAC And GAF Sensors; Two-Component System Sensor Histidine Kinase; Histidine Kinase/Response Regulator Hybrid Protein; GAF Sensor Hybrid Histidine Kinase; GAF Sensor Diguanylate Cyclase; GAF Domain/GGDEF Domain/EAL Domain-Containing Protein; Phytochrome Sensor Protein; Signal Transduction Protein; Signal Transduction Histidine Kinase-Like Protein; Diguanylate Phosphodiesterase With GAF Sensor; Sensory Transduction Histidine Kinase; Signaling Protein; PAS/PAC Sensor Protein; GGDEF Family Protein; ATPase Histidine Kinase- DNA Gyrase B- And; Response Regulator Receiver Domain Protein; HWE Histidine Kinase; GAF Sensor-Containing Diguanylate Cyclase/Phosphodiesterase; GAF Sensor-Containing Diguanylate Cyclase; Pas/Pac Sensor Protein; Stage II Sporulation E Family Protein; GGDEF GAF Signalling Protein; Sensory Histidine Protein Kinase; Two-Component Sensor Histidine Kinase; Diguanylate Cyclase/Phosphodiesterase With GAF Sensor; GAF Domain/GGDEF Domain Protein; Two Component System Sensor Protein; Sensory Box Histidine Kinase/Response Regulator; Protein Containing GAF Domain; GAF Domain Protein; Adenylate Cyclase; Sensor Histidine Kinase/GAF Domain-Containing Protein; Histidine Kinase Of HWE Family; GAF/PAS-Family Sensor Histidine Kinase; GGDEF Domain-Containing PAS Signal Transduction Protein; Two-Component System Sensor Kinase; GAF And Chase3 Sensor Phosphotransfer Protein; FOG GGDEF Domain Protein; Serine/Threonine Protein Kinase; Cyclic Diguanylate Phosphodiesterase/Diguanylate Cyclase; Gaf Sensor Signal Transduction Histidine Kinase; GGDEF And GAF Signalling Protein; Phosphodiesterase; Magnesium Or Manganese-Dependent Protein Phosphatase; Sensor Kinase Protein
Number of amino acids: Translated: 372; Mature: 371
Protein sequence:
>372_residues MSIPEEDRVLTSRDVAHRLGVSIKTAQGWIEANVPQSWKTPGGHRRAHERDVLAAQMRMAAPPDHDLAPVPVAFLTSEST WRHFRERLADVDARFEHVGDALTALSTVGRIQPAVVVIEISATDWDRGLVVNHLLSDSHLAHVAVIALCDERGRAHLATA ASARLTVLARDAEAAAAEAVRAALVPFLDGASGGAEAGSAVPYPVARNEAKRLLALRRSGLVDSPYEDIFDDTARLAARV FSAPIALISLVTTDRQWFKAHHGLGVRETPRIWAFCNYTILGDSFVVEDAQQDSRFKDNVLVTGAPQIRFYAGAPLRDSD GYALGSLCVIDQVPRKASDTGMDALRLLADLISSRICLAQKLREQLQRHPSA
Sequences:
>Translated_372_residues MSIPEEDRVLTSRDVAHRLGVSIKTAQGWIEANVPQSWKTPGGHRRAHERDVLAAQMRMAAPPDHDLAPVPVAFLTSEST WRHFRERLADVDARFEHVGDALTALSTVGRIQPAVVVIEISATDWDRGLVVNHLLSDSHLAHVAVIALCDERGRAHLATA ASARLTVLARDAEAAAAEAVRAALVPFLDGASGGAEAGSAVPYPVARNEAKRLLALRRSGLVDSPYEDIFDDTARLAARV FSAPIALISLVTTDRQWFKAHHGLGVRETPRIWAFCNYTILGDSFVVEDAQQDSRFKDNVLVTGAPQIRFYAGAPLRDSD GYALGSLCVIDQVPRKASDTGMDALRLLADLISSRICLAQKLREQLQRHPSA >Mature_371_residues SIPEEDRVLTSRDVAHRLGVSIKTAQGWIEANVPQSWKTPGGHRRAHERDVLAAQMRMAAPPDHDLAPVPVAFLTSESTW RHFRERLADVDARFEHVGDALTALSTVGRIQPAVVVIEISATDWDRGLVVNHLLSDSHLAHVAVIALCDERGRAHLATAA SARLTVLARDAEAAAAEAVRAALVPFLDGASGGAEAGSAVPYPVARNEAKRLLALRRSGLVDSPYEDIFDDTARLAARVF SAPIALISLVTTDRQWFKAHHGLGVRETPRIWAFCNYTILGDSFVVEDAQQDSRFKDNVLVTGAPQIRFYAGAPLRDSDG YALGSLCVIDQVPRKASDTGMDALRLLADLISSRICLAQKLREQLQRHPSA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 40471; Mature: 40340
Theoretical pI: Translated: 6.85; Mature: 6.85
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSIPEEDRVLTSRDVAHRLGVSIKTAQGWIEANVPQSWKTPGGHRRAHERDVLAAQMRMA CCCCCCCCCHHHHHHHHHHCCEEEECCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHC APPDHDLAPVPVAFLTSESTWRHFRERLADVDARFEHVGDALTALSTVGRIQPAVVVIEI CCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEE SATDWDRGLVVNHLLSDSHLAHVAVIALCDERGRAHLATAASARLTVLARDAEAAAAEAV ECCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEEHHCCCEEEEEECCHHHHHHHHH RAALVPFLDGASGGAEAGSAVPYPVARNEAKRLLALRRSGLVDSPYEDIFDDTARLAARV HHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH FSAPIALISLVTTDRQWFKAHHGLGVRETPRIWAFCNYTILGDSFVVEDAQQDSRFKDNV HHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCEEEEEEEEEECCCCEECCCHHCCCCCCCE LVTGAPQIRFYAGAPLRDSDGYALGSLCVIDQVPRKASDTGMDALRLLADLISSRICLAQ EEECCCCEEEEECCCCCCCCCCEEHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH KLREQLQRHPSA HHHHHHHHCCCC >Mature Secondary Structure SIPEEDRVLTSRDVAHRLGVSIKTAQGWIEANVPQSWKTPGGHRRAHERDVLAAQMRMA CCCCCCCCHHHHHHHHHHCCEEEECCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHC APPDHDLAPVPVAFLTSESTWRHFRERLADVDARFEHVGDALTALSTVGRIQPAVVVIEI CCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEE SATDWDRGLVVNHLLSDSHLAHVAVIALCDERGRAHLATAASARLTVLARDAEAAAAEAV ECCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEEHHCCCEEEEEECCHHHHHHHHH RAALVPFLDGASGGAEAGSAVPYPVARNEAKRLLALRRSGLVDSPYEDIFDDTARLAARV HHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH FSAPIALISLVTTDRQWFKAHHGLGVRETPRIWAFCNYTILGDSFVVEDAQQDSRFKDNV HHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCEEEEEEEEEECCCCEECCCHHCCCCCCCE LVTGAPQIRFYAGAPLRDSDGYALGSLCVIDQVPRKASDTGMDALRLLADLISSRICLAQ EEECCCCEEEEECCCCCCCCCCEEHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH KLREQLQRHPSA HHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA