Click here to switch to the map view.

The map label for this gene is pme [H]

Identifier: 238025221

GI number: 238025221

Start: 2357942

End: 2359660

Strand: Reverse

Name: pme [H]

Synonym: bglu_2g18920

Alternate gene names: 238025221

Gene position: 2359660-2357942 (Counterclockwise)

Preceding gene: 238025223

Following gene: 238025213

Centisome position: 83.46

GC content: 69.17

Gene sequence:

>1719_bases
ATGCGTCGCACCATCACGTTCCTTTTGATGCCCGCCACGATCGTGCTGGCGGCCTGCGGCGGCGACGCGGCGCCGTCGGG
CCCTGGCGTCGGCGCAAACAGCGCGACCGCGGCCACCGCCACCGGGACCGACTCCGTGGCCGCGGCGGCGACGTCCGCCT
TCGTGCCGGCCAACGGCGAGACGGCCGCCTGCGCGGATACGCGCCTGTCGATCACCTTCGATGCGCCGCCCACGCTCGGC
ACCAGCGGGCGGATCAAGGTGATGCGCGCCTCGGACGGCAGCGTGGCGGACACCATCGACATCAGCGGCGCGCCCGTCAC
CGCCGGCGGCGAAACCCAGACCTACATGCCGGCCGCCAACACGGAGATCGACAAGCTCGGCAACAACGTCGGCTCGCTCA
CGCAATGGCGCTACGTGTACTACACGCCGGTCACGATCTCCGGCAATACCGCGACGGTGCGCCTGCACGACGGCGTGCTC
GCCTACGGCACGCGCTACTACGTGAGCGTCGACAACGGCGTGCTGAACGGCAGGATCGGCGGCAAGGCCTTTGCCGGCAT
CGCTTCGCCGACGGCATGGGCGTTCCAGACCCATGCCGCGCCGCGCTCGCCCACGGCCGTCACGGTTGCCGCCAGCGGCA
CGAGCGATTTCCGCAGCGTGCAGGGCGCGCTCGACTGGATCATGCAGAACGGCTGCGTGACCTGCACCAACGCGAACGAT
GCCAAGACCATCACGATCGCGAACGGCAGCTACAACGAGCAACTGTTCCTGCGCAACGTGAACAACCTGACGATCGCGGG
CCAGAGCCGCACGGGCGTGGTCGTCTACGACGACAACTACGAGTCCTACAACCCGTCCACCGGCGGCAGCAGGACTGCCC
CGCAGAGCACGCTGACCACCGAGGGCAGCGGCACGCGCCGCAGCCTCGGCGGCGGCCGCTCGGTGTTCCTCGTGGAAGGC
GCCGACCTGCTGAAGCTGACGAACTTCACGCTGCAGAATTCGCACGTGAAGCGCGCCGTCGACAACAATCAGGCCGAGGC
GATCTACTACAACAGCGCCACCCTGAACGGCAGCCGCCTCAGCGCCACGCAGATGACCTTCCTGAGCGCGCAGGACACGC
TGCAGCTCAAGGGCTGGGCGTGGTTCTACCAGTCGCTGATCGCCGGCGACGTCGATTTCATCTGGGGCTCGCCGTATGCG
GCGCTGTTCGAGCAGAGCGAATTGCATACCGTGGCCGATCCGGTCACGCCCACCTCGGGCGGCTACGTGTTCCAGTCGCG
CGCGGCCTACGGCTTCCCCGGCTTCGTGGTGCTCGACGGCACGCTGACGGCCGATGCCGCGGTGCCGGCGGGCGCCACCT
ATCTGGCGCGCTCGGGCGGCCTGGCCTCGCCGGCCTACTGCACCACCGCGTACACCGGCAGCGGCAGCTTCGGCAATGCC
AATCTCGGCTGCGACGACGTAGCCTACATCGGCACCAGGATGGGCACGCATGTCGCGGCGGACGGCTGGTACACGAACCC
CACGCCCAACCCGGCGTCGCCGACCGCCGCCGCGGGCTGGCGCGAGACGGGCAGCCTGGATGCGTCGGGCCACGCGCTGA
GCACGAGCGGCCGCAATTCGGTCGTCGCCACGACGGGTGCCGACTTGAGCGGGCTGAATACGCGTGCGAAGGTGTTCGCC
TCATGGAACAACAACGCGGGCTGGACGCCTGCTCCGTAA

Upstream 100 bases:

>100_bases
GATCTCGATCCACTGAGCTGCACCGCCGCGGCCAGCGGAGCCGCGGCATCGCCGAGCCGTTTTCTTCCAACCGATTCCAT
CAAGCCAAGCAGGGGATGAC

Downstream 100 bases:

>100_bases
CGCCCCTGCGGGGGCGGGCCTGCGCCGCGCGCGCGGGCATCGCTCGCGCGGCGGCCCGCTTCGCGTCGAGGCCGTCAGCC
CTGCCGGCCGACGACGTAAT

Product: bifunctional pectin methylesterase/pectate lyase

Products: NA

Alternate protein names: PE; Pectin methylesterase [H]

Number of amino acids: Translated: 572; Mature: 572

Protein sequence:

>572_residues
MRRTITFLLMPATIVLAACGGDAAPSGPGVGANSATAATATGTDSVAAAATSAFVPANGETAACADTRLSITFDAPPTLG
TSGRIKVMRASDGSVADTIDISGAPVTAGGETQTYMPAANTEIDKLGNNVGSLTQWRYVYYTPVTISGNTATVRLHDGVL
AYGTRYYVSVDNGVLNGRIGGKAFAGIASPTAWAFQTHAAPRSPTAVTVAASGTSDFRSVQGALDWIMQNGCVTCTNAND
AKTITIANGSYNEQLFLRNVNNLTIAGQSRTGVVVYDDNYESYNPSTGGSRTAPQSTLTTEGSGTRRSLGGGRSVFLVEG
ADLLKLTNFTLQNSHVKRAVDNNQAEAIYYNSATLNGSRLSATQMTFLSAQDTLQLKGWAWFYQSLIAGDVDFIWGSPYA
ALFEQSELHTVADPVTPTSGGYVFQSRAAYGFPGFVVLDGTLTADAAVPAGATYLARSGGLASPAYCTTAYTGSGSFGNA
NLGCDDVAYIGTRMGTHVAADGWYTNPTPNPASPTAAAGWRETGSLDASGHALSTSGRNSVVATTGADLSGLNTRAKVFA
SWNNNAGWTPAP

Sequences:

>Translated_572_residues
MRRTITFLLMPATIVLAACGGDAAPSGPGVGANSATAATATGTDSVAAAATSAFVPANGETAACADTRLSITFDAPPTLG
TSGRIKVMRASDGSVADTIDISGAPVTAGGETQTYMPAANTEIDKLGNNVGSLTQWRYVYYTPVTISGNTATVRLHDGVL
AYGTRYYVSVDNGVLNGRIGGKAFAGIASPTAWAFQTHAAPRSPTAVTVAASGTSDFRSVQGALDWIMQNGCVTCTNAND
AKTITIANGSYNEQLFLRNVNNLTIAGQSRTGVVVYDDNYESYNPSTGGSRTAPQSTLTTEGSGTRRSLGGGRSVFLVEG
ADLLKLTNFTLQNSHVKRAVDNNQAEAIYYNSATLNGSRLSATQMTFLSAQDTLQLKGWAWFYQSLIAGDVDFIWGSPYA
ALFEQSELHTVADPVTPTSGGYVFQSRAAYGFPGFVVLDGTLTADAAVPAGATYLARSGGLASPAYCTTAYTGSGSFGNA
NLGCDDVAYIGTRMGTHVAADGWYTNPTPNPASPTAAAGWRETGSLDASGHALSTSGRNSVVATTGADLSGLNTRAKVFA
SWNNNAGWTPAP
>Mature_572_residues
MRRTITFLLMPATIVLAACGGDAAPSGPGVGANSATAATATGTDSVAAAATSAFVPANGETAACADTRLSITFDAPPTLG
TSGRIKVMRASDGSVADTIDISGAPVTAGGETQTYMPAANTEIDKLGNNVGSLTQWRYVYYTPVTISGNTATVRLHDGVL
AYGTRYYVSVDNGVLNGRIGGKAFAGIASPTAWAFQTHAAPRSPTAVTVAASGTSDFRSVQGALDWIMQNGCVTCTNAND
AKTITIANGSYNEQLFLRNVNNLTIAGQSRTGVVVYDDNYESYNPSTGGSRTAPQSTLTTEGSGTRRSLGGGRSVFLVEG
ADLLKLTNFTLQNSHVKRAVDNNQAEAIYYNSATLNGSRLSATQMTFLSAQDTLQLKGWAWFYQSLIAGDVDFIWGSPYA
ALFEQSELHTVADPVTPTSGGYVFQSRAAYGFPGFVVLDGTLTADAAVPAGATYLARSGGLASPAYCTTAYTGSGSFGNA
NLGCDDVAYIGTRMGTHVAADGWYTNPTPNPASPTAAAGWRETGSLDASGHALSTSGRNSVVATTGADLSGLNTRAKVFA
SWNNNAGWTPAP

Specific function: Involved in maceration and soft-rotting of plant tissue [H]

COG id: COG4677

COG function: function code G; Pectin methylesterase

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the pectinesterase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012334
- InterPro:   IPR011050
- InterPro:   IPR018040
- InterPro:   IPR000070 [H]

Pfam domain/function: PF01095 Pectinesterase [H]

EC number: =3.1.1.11 [H]

Molecular weight: Translated: 59044; Mature: 59044

Theoretical pI: Translated: 5.67; Mature: 5.67

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRTITFLLMPATIVLAACGGDAAPSGPGVGANSATAATATGTDSVAAAATSAFVPANGE
CCEEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHEEEECCCCC
TAACADTRLSITFDAPPTLGTSGRIKVMRASDGSVADTIDISGAPVTAGGETQTYMPAAN
EEEECCCEEEEEECCCCCCCCCCEEEEEECCCCCEEEEEECCCCEEECCCCCEEECCCCC
TEIDKLGNNVGSLTQWRYVYYTPVTISGNTATVRLHDGVLAYGTRYYVSVDNGVLNGRIG
CCHHHHCCCCCCCEEEEEEEEEEEEEECCEEEEEEECCEEEECEEEEEEECCCEEECCCC
GKAFAGIASPTAWAFQTHAAPRSPTAVTVAASGTSDFRSVQGALDWIMQNGCVTCTNAND
CEEEECCCCCCEEEEEECCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCEEEECCCC
AKTITIANGSYNEQLFLRNVNNLTIAGQSRTGVVVYDDNYESYNPSTGGSRTAPQSTLTT
CEEEEEECCCCCCEEEEEECCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEE
EGSGTRRSLGGGRSVFLVEGADLLKLTNFTLQNSHVKRAVDNNQAEAIYYNSATLNGSRL
CCCCCCCCCCCCCEEEEEECCCEEEEEEEEECCCHHHHHHCCCCCEEEEEECEECCCCCC
SATQMTFLSAQDTLQLKGWAWFYQSLIAGDVDFIWGSPYAALFEQSELHTVADPVTPTSG
EEEEEEEEECCCCEEECHHHHHHHHHHHCCCEEEECCCHHHHHCCCCCHHHCCCCCCCCC
GYVFQSRAAYGFPGFVVLDGTLTADAAVPAGATYLARSGGLASPAYCTTAYTGSGSFGNA
CEEEECCCCCCCCCEEEECCCEEECCCCCCCCEEEECCCCCCCCCEEEEEEECCCCCCCC
NLGCDDVAYIGTRMGTHVAADGWYTNPTPNPASPTAAAGWRETGSLDASGHALSTSGRNS
CCCCCHHHHHHHHCCCEEEECCEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCC
VVATTGADLSGLNTRAKVFASWNNNAGWTPAP
EEEECCCCCCCCCCEEEEEEEECCCCCCCCCC
>Mature Secondary Structure
MRRTITFLLMPATIVLAACGGDAAPSGPGVGANSATAATATGTDSVAAAATSAFVPANGE
CCEEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHEEEECCCCC
TAACADTRLSITFDAPPTLGTSGRIKVMRASDGSVADTIDISGAPVTAGGETQTYMPAAN
EEEECCCEEEEEECCCCCCCCCCEEEEEECCCCCEEEEEECCCCEEECCCCCEEECCCCC
TEIDKLGNNVGSLTQWRYVYYTPVTISGNTATVRLHDGVLAYGTRYYVSVDNGVLNGRIG
CCHHHHCCCCCCCEEEEEEEEEEEEEECCEEEEEEECCEEEECEEEEEEECCCEEECCCC
GKAFAGIASPTAWAFQTHAAPRSPTAVTVAASGTSDFRSVQGALDWIMQNGCVTCTNAND
CEEEECCCCCCEEEEEECCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCEEEECCCC
AKTITIANGSYNEQLFLRNVNNLTIAGQSRTGVVVYDDNYESYNPSTGGSRTAPQSTLTT
CEEEEEECCCCCCEEEEEECCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEE
EGSGTRRSLGGGRSVFLVEGADLLKLTNFTLQNSHVKRAVDNNQAEAIYYNSATLNGSRL
CCCCCCCCCCCCCEEEEEECCCEEEEEEEEECCCHHHHHHCCCCCEEEEEECEECCCCCC
SATQMTFLSAQDTLQLKGWAWFYQSLIAGDVDFIWGSPYAALFEQSELHTVADPVTPTSG
EEEEEEEEECCCCEEECHHHHHHHHHHHCCCEEEECCCHHHHHCCCCCHHHCCCCCCCCC
GYVFQSRAAYGFPGFVVLDGTLTADAAVPAGATYLARSGGLASPAYCTTAYTGSGSFGNA
CEEEECCCCCCCCCEEEECCCEEECCCCCCCCEEEECCCCCCCCCEEEEEEECCCCCCCC
NLGCDDVAYIGTRMGTHVAADGWYTNPTPNPASPTAAAGWRETGSLDASGHALSTSGRNS
CCCCCHHHHHHHHCCCEEEECCEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCC
VVATTGADLSGLNTRAKVFASWNNNAGWTPAP
EEEECCCCCCCCCCEEEEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2045776 [H]