Definition | Burkholderia glumae BGR1 chromosome chromosome 2, complete sequence. |
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Accession | NC_012721 |
Length | 2,827,333 |
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The map label for this gene is yueD [H]
Identifier: 238025159
GI number: 238025159
Start: 2282891
End: 2283649
Strand: Reverse
Name: yueD [H]
Synonym: bglu_2g18250
Alternate gene names: 238025159
Gene position: 2283649-2282891 (Counterclockwise)
Preceding gene: 238025161
Following gene: 238025157
Centisome position: 80.77
GC content: 74.44
Gene sequence:
>759_bases ATGACCCCGACCCATTCCACGCCGCCCGCGATCCGCGCGATCGTCACCGGCCACACGCGCGGCCTCGGCGCCGCGCTCGC CACGCAGCTGCTGCGCCGCGACATCGCCGTGCTCGGCGTGTCGCGCGGCGCGCACCCGTCGCTCGCCGCCCAATACGGCG GCCGCTTCGCCGAGGCCGCGCTCGACCTCTCCGACCCCGCGCGGGTGGCCGCGTGGCTGGCCGGCGGCGAGCTCGAACGC TTCGCGTCCGGCGCGCGCACGGTGCTGCTGATCAACAACGCGGGCACGGTCGAGCCGATCGGCCCGCTCGCGGTGCAGAC GCCCGAGGCGATCGCGCGCGCGGTGGCGCTGAACGTGACGGCGCCGCTGCTGTTCGCGAGCGCGGTCGCCCAGCTCGGCG ACGGCTCGCTCGAGCGGCGCATCGCGCACGTCTCGAGCGGCGCCGCGCGCAACGCCTATGCGGGCTGGAGCGTCTATTGC GCGACCAAGGCCGCGCTCGATCATCACGCGCGCGCGGTCGCGCTCGATCACAACGGTCCGCTGCGGATCGCCAGCGTCGC GCCGGGCGTGGTCGACACCGACATGCAGGCCACCATCCGCGCCACCGACGCGAGCCGCTTTCCGCAGCTCGACCGGTTCG AACGGCTGAAGGCGAGCGGCGCGCTGACCACGCCCGACGATGCGGCGCGCAAGCTGATCGACCACCTGCTCGACGACAGT TTCGGCAACCCGCCGATCAGCGACGTGCGCGACTGGTGA
Upstream 100 bases:
>100_bases CGCGCCGGTCCGCATCGCCGGGCGGCGGCCCGCGGGCCGGCCCGCCTGCCGGCGCGCCGCCGCTCACGATCGCCTCCCCG TCACCTCACGCCACTCCGAC
Downstream 100 bases:
>100_bases GCAAGGGCTGCGGCGCGAGCCCGCTCGTAGCGGCGCTCGGCTACGCGCCGCCGGCCGCGAGCCGGCATCGCTCGCGCATC GCGGGCCGGCAGGCCGCTCG
Product: short chain dehydrogenase
Products: 2,3-Dihydroxybenzoate; H+; Nicotinamide adenine dinucleotide - reduced [C]
Alternate protein names: NA
Number of amino acids: Translated: 252; Mature: 251
Protein sequence:
>252_residues MTPTHSTPPAIRAIVTGHTRGLGAALATQLLRRDIAVLGVSRGAHPSLAAQYGGRFAEAALDLSDPARVAAWLAGGELER FASGARTVLLINNAGTVEPIGPLAVQTPEAIARAVALNVTAPLLFASAVAQLGDGSLERRIAHVSSGAARNAYAGWSVYC ATKAALDHHARAVALDHNGPLRIASVAPGVVDTDMQATIRATDASRFPQLDRFERLKASGALTTPDDAARKLIDHLLDDS FGNPPISDVRDW
Sequences:
>Translated_252_residues MTPTHSTPPAIRAIVTGHTRGLGAALATQLLRRDIAVLGVSRGAHPSLAAQYGGRFAEAALDLSDPARVAAWLAGGELER FASGARTVLLINNAGTVEPIGPLAVQTPEAIARAVALNVTAPLLFASAVAQLGDGSLERRIAHVSSGAARNAYAGWSVYC ATKAALDHHARAVALDHNGPLRIASVAPGVVDTDMQATIRATDASRFPQLDRFERLKASGALTTPDDAARKLIDHLLDDS FGNPPISDVRDW >Mature_251_residues TPTHSTPPAIRAIVTGHTRGLGAALATQLLRRDIAVLGVSRGAHPSLAAQYGGRFAEAALDLSDPARVAAWLAGGELERF ASGARTVLLINNAGTVEPIGPLAVQTPEAIARAVALNVTAPLLFASAVAQLGDGSLERRIAHVSSGAARNAYAGWSVYCA TKAALDHHARAVALDHNGPLRIASVAPGVVDTDMQATIRATDASRFPQLDRFERLKASGALTTPDDAARKLIDHLLDDSF GNPPISDVRDW
Specific function: Reduces benzil stereospecifically to (S)-benzoin. Can also reduces 1-phenyl-1,2-propanedione, 1,4-naphthoquinone, 1-(4- methyl-phenyl)-2-phenyl-ethane-1,2-dione, 1-(4-fluoro-phenyl)-2- phenyl-ethane-1,2-dione, methyl benzoylformate, p- nitrobenzaldehyde i
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI4507185, Length=174, Percent_Identity=33.3333333333333, Blast_Score=81, Evalue=1e-15, Organism=Saccharomyces cerevisiae, GI6322227, Length=229, Percent_Identity=31.4410480349345, Blast_Score=87, Evalue=2e-18, Organism=Saccharomyces cerevisiae, GI6322226, Length=262, Percent_Identity=28.6259541984733, Blast_Score=80, Evalue=3e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.3.1.28 [C]
Molecular weight: Translated: 26309; Mature: 26178
Theoretical pI: Translated: 7.84; Mature: 7.84
Prosite motif: PS00120 LIPASE_SER
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 0.4 %Met (Mature Protein) 0.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTPTHSTPPAIRAIVTGHTRGLGAALATQLLRRDIAVLGVSRGAHPSLAAQYGGRFAEAA CCCCCCCCHHHHHEECCCCCCHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHCCHHHHHH LDLSDPARVAAWLAGGELERFASGARTVLLINNAGTVEPIGPLAVQTPEAIARAVALNVT HCCCCHHHHHHHHHCCHHHHHHCCCCEEEEEECCCCCCCCCCCEECCHHHHHHHHHHHHH APLLFASAVAQLGDGSLERRIAHVSSGAARNAYAGWSVYCATKAALDHHARAVALDHNGP HHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCEEEEHHHHHHHCCCEEEEEECCCC LRIASVAPGVVDTDMQATIRATDASRFPQLDRFERLKASGALTTPDDAARKLIDHLLDDS EEEEECCCCCCCCCCHHEEEECCHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCC FGNPPISDVRDW CCCCCCHHCCCC >Mature Secondary Structure TPTHSTPPAIRAIVTGHTRGLGAALATQLLRRDIAVLGVSRGAHPSLAAQYGGRFAEAA CCCCCCCHHHHHEECCCCCCHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHCCHHHHHH LDLSDPARVAAWLAGGELERFASGARTVLLINNAGTVEPIGPLAVQTPEAIARAVALNVT HCCCCHHHHHHHHHCCHHHHHHCCCCEEEEEECCCCCCCCCCCEECCHHHHHHHHHHHHH APLLFASAVAQLGDGSLERRIAHVSSGAARNAYAGWSVYCATKAALDHHARAVALDHNGP HHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCEEEEHHHHHHHCCCEEEEEECCCC LRIASVAPGVVDTDMQATIRATDASRFPQLDRFERLKASGALTTPDDAARKLIDHLLDDS EEEEECCCCCCCCCCHHEEEECCHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCC FGNPPISDVRDW CCCCCCHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NAD+ [C]
Metal ions: NA
Kcat value (1/min): 5550 [C]
Specific activity: 66
Km value (mM): 0.26 {methyl-2,3-dehydro-3-hydroxybenzoate}} 0.2 {3-oxocyclohexane-1-carboxylic} 0.3 {2,3-dihydro-2,3-dihydroxybenzoate}} [C]
Substrates: 2,3-Dihydro-2,3-dihydroxybenzoate; Nicotinamide adenine dinucleotide [C]
Specific reaction: 2,3-Dihydro-2,3-dihydroxybenzoate + Nicotinamide adenine dinucleotide <==> 2,3-Dihydroxybenzoate + H+ + Nicotinamide adenine dinucleotide - reduced [C]
General reaction: Redox reaction [C]
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11745140; 11796169 [H]