Definition | Burkholderia glumae BGR1 chromosome chromosome 2, complete sequence. |
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Accession | NC_012721 |
Length | 2,827,333 |
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The map label for this gene is 238025147
Identifier: 238025147
GI number: 238025147
Start: 2262840
End: 2265107
Strand: Reverse
Name: 238025147
Synonym: bglu_2g18120
Alternate gene names: NA
Gene position: 2265107-2262840 (Counterclockwise)
Preceding gene: 238025148
Following gene: 238025146
Centisome position: 80.11
GC content: 72.93
Gene sequence:
>2268_bases ATGCCCGGTATCCCAGCAGATCACGCTTCCTCGACGGCCGCGCAGGCTGTCGCCGCCGCTTCGTCCGCGCCGCCTGCGGC GCCGCCCGCGGGTGCCGCCGCGCCCCCCTTCATCGCCCCCGAACCCGGCTCGCAGAAGCCCGTGCGCGGCAGCCAGCACG TGCTGAAGTCGGGCGACGCGTTCGTGGTCAGCGACACGCTCGGCGACATCTCCGGCCACGACGACGGCCTGTTCGTCGAC GACATGCGCGTGCTGTCGGGCTGGCGGCTCACGTTCGGCGGCCGCGCGCCGTCGCTGCTGTCGGGCGCGACCAGCGCCGA CAACGCCTCGTTCACCGCGCATCTGACCAACCGGCCGCTGCCGCCGCTCGGCGGCCACGAGATGCCGGAAGGCGTGATCC ACATCGAGCGGATGCGCGTGCTCTCCGAGAACGTGCTCTACGAGGCGCTCACGCTCACCAACTACGGCACGACCGACGCC GAGGTGCCGCTGTCGATCTCGTTTTCCGCCGACTTTCTCGACATGTTCGAGGTGCGCGGCACGCCGCGCGAGCGACGCGG CGAGGTGGCCGCGCCGCAGGTCGAGGCAGGGCAGGTGCGGCTGCGCTACGACGGCCTCGACGGCGTCACGCGCACGGTGC GGATCGGCTTCTCGCCGGCGCCGGTGCGGCTCGACACCGAGCGCGCCGACTACACGCTGACGATCGCCGCGCAGGCCTGC GTGTCGATCTACCTGACGGTGGAGGCGCGCATCGAGCGCGACGGCGAGCCGGCCGAGCCCGCGCAGTCGCTCGCCAAGGC GAGCCGGCCGGGTTTGCGCCGCGCGTTGGTGCAGGTCCACCGCAAGATGCGCGAGCGGCGCCGCATGACCACGCGCGTGC GCACCAGCAACCCGCTCTTCAACGCCTGGCTGGAGCGCTCGCTCGCCGATCTCGGCCTGCTGACCACCCAGCTCGAGACG GGGCCCTATCCTTATGCCGGCATCCCGTGGTTCTCCACGCCGTTCGGCCGCGACGCCGTGATCACCTCGCTGCAGATGCT GTGGCTGCAGCCGTCGCTCGCGCGCGGCGTGCTGCGTTTTCTCGCGAAGCATCAGGCGCGCGAGGCGTCGGCGTTCCGCG ACGCCGAGCCGGGCAAGATCATGCACGAGTTCCGCCGCAGCGAAATGGCGGCCACCGGCGAGGTGCCGTTCGCGCTCTAC TACGGCGGCGTCGACACCACGCCGCTGTTCGTGGTGCTGGCGGGCGCCTACCTGGAGCAGACCGGCGACACGGCGCTGAT CGACGAGCTGTGGCCCGCGCTCGAACGCGCGGCGGACTGGGTCGCGCGCGCCTGCGACCGTAATCCGCTCGGCCTGCTCG ACTACCAGAAGACCTCCGAGCGCGGCCTCGCGAACCAGGGCTGGAAGGACAGCCACGATTCGGTGTTCCATGCCGACGGC CGCTTTCCGGAAGGGCCGATCGCGCTGGTGGAGGTGCAGGCCTACGCGTGCGCGGCGTTCGACGCGATGGCGACGTTCTC CACGCATCGCGGCGACACCGGGCGCGCGGCCGGCTACGCGGCACGCGCGAAGACGCTGCGCGAGGCGGTGGAGACGCACT ACTGGATGCCGGAGGCCAACTTCTACGGGATCGCGCTGGACGGACGCGGCGAGCTGTGCCGCGTGCTGGCGTCGAACGCG GGGCACCTGCTCGCGTTCGGGCTGCCCGAGGCGAGCCGCGGCGAGGCCGTGGCGGCCACGCTCGATTCGTCGCTGTTCCG CACCGGCTGGGGCGTGCGCACGCTCGCGGCCGGCCAGCCGCGCTTCAACCCGATGGCCTACCACAACGGCTCGGTCTGGC CGCACGACAACGCGCTGGCCGCGCGCGGCTTCGCGCGCTACGGCAACAAGACGGCCGCCACCGAGCTGCTGCGTGCGCTG TTCGAGGCGGCGGTCAGCTTCGACATGCGCCTGCCCGAGCTGTTCTGCGGTTTCCCGCGCCGGCGCGGCGAGCCGCCGAC GGCTTATCCGGTCGCCTGCCTGCCGCAGGCGTGGGCGGCCGGCTCGCCGTTCATGATGCTGCAGGCCTGCCTGGGCGTGA GCGTCGACGCCGCGCGCGGCGAGGTGCGCATCGAGCGGCCGGCGCTGCCCGAGGGGATCGGCTGGCTCGATCTCGACGGG CTGCGGGTGGGCGACGAGACGGTCTCGCTGACGTTCCGCCGGGTGGGCGGCCAGGTGGTGGCGGCCGCCAACGGCGCCGG GCGCGTGAAGGTGGTGGCGGCGCTGTAG
Upstream 100 bases:
>100_bases GCGTGGCGGGCGCATTCTGGCCTATCCTGTGGCGAATCGGGGTGCAAGCAGCGACCGGCTTGCCCGCCCCCTTTCCCGTG GACCGCAGTCAGGAGTCGCA
Downstream 100 bases:
>100_bases GCCCGCGGCCCGGCGGCCGGCCGCGCCATGCGGCATGGCGTGGCCGGCGGCCAATTGCCGCGCCCGGTCGGGCCGCTCGC GCGGGAATCGCCCGGGCGTG
Product: Amylo-alpha-1,6-glucosidase family protein
Products: NA
Alternate protein names: Amylo-Alpha-1 6-Glucosidase; Glycogen Debranching; Glycogen Debranching Protein; Amylo-Alpha-1 6-Glucosidase Family; Glycogen Debranching Family Protein; LOW QUALITY PROTEIN Amylo-Alpha-1 6-Glucosidase; Neutral Invertase; Glycoside Transferase; Amylo-Alpha-1 6-Glucosidase Protein; Glycogen Debranching -Like Protein; Amylo-Alpha-1 6-Glucosidase Family Protein
Number of amino acids: Translated: 755; Mature: 754
Protein sequence:
>755_residues MPGIPADHASSTAAQAVAAASSAPPAAPPAGAAAPPFIAPEPGSQKPVRGSQHVLKSGDAFVVSDTLGDISGHDDGLFVD DMRVLSGWRLTFGGRAPSLLSGATSADNASFTAHLTNRPLPPLGGHEMPEGVIHIERMRVLSENVLYEALTLTNYGTTDA EVPLSISFSADFLDMFEVRGTPRERRGEVAAPQVEAGQVRLRYDGLDGVTRTVRIGFSPAPVRLDTERADYTLTIAAQAC VSIYLTVEARIERDGEPAEPAQSLAKASRPGLRRALVQVHRKMRERRRMTTRVRTSNPLFNAWLERSLADLGLLTTQLET GPYPYAGIPWFSTPFGRDAVITSLQMLWLQPSLARGVLRFLAKHQAREASAFRDAEPGKIMHEFRRSEMAATGEVPFALY YGGVDTTPLFVVLAGAYLEQTGDTALIDELWPALERAADWVARACDRNPLGLLDYQKTSERGLANQGWKDSHDSVFHADG RFPEGPIALVEVQAYACAAFDAMATFSTHRGDTGRAAGYAARAKTLREAVETHYWMPEANFYGIALDGRGELCRVLASNA GHLLAFGLPEASRGEAVAATLDSSLFRTGWGVRTLAAGQPRFNPMAYHNGSVWPHDNALAARGFARYGNKTAATELLRAL FEAAVSFDMRLPELFCGFPRRRGEPPTAYPVACLPQAWAAGSPFMMLQACLGVSVDAARGEVRIERPALPEGIGWLDLDG LRVGDETVSLTFRRVGGQVVAAANGAGRVKVVAAL
Sequences:
>Translated_755_residues MPGIPADHASSTAAQAVAAASSAPPAAPPAGAAAPPFIAPEPGSQKPVRGSQHVLKSGDAFVVSDTLGDISGHDDGLFVD DMRVLSGWRLTFGGRAPSLLSGATSADNASFTAHLTNRPLPPLGGHEMPEGVIHIERMRVLSENVLYEALTLTNYGTTDA EVPLSISFSADFLDMFEVRGTPRERRGEVAAPQVEAGQVRLRYDGLDGVTRTVRIGFSPAPVRLDTERADYTLTIAAQAC VSIYLTVEARIERDGEPAEPAQSLAKASRPGLRRALVQVHRKMRERRRMTTRVRTSNPLFNAWLERSLADLGLLTTQLET GPYPYAGIPWFSTPFGRDAVITSLQMLWLQPSLARGVLRFLAKHQAREASAFRDAEPGKIMHEFRRSEMAATGEVPFALY YGGVDTTPLFVVLAGAYLEQTGDTALIDELWPALERAADWVARACDRNPLGLLDYQKTSERGLANQGWKDSHDSVFHADG RFPEGPIALVEVQAYACAAFDAMATFSTHRGDTGRAAGYAARAKTLREAVETHYWMPEANFYGIALDGRGELCRVLASNA GHLLAFGLPEASRGEAVAATLDSSLFRTGWGVRTLAAGQPRFNPMAYHNGSVWPHDNALAARGFARYGNKTAATELLRAL FEAAVSFDMRLPELFCGFPRRRGEPPTAYPVACLPQAWAAGSPFMMLQACLGVSVDAARGEVRIERPALPEGIGWLDLDG LRVGDETVSLTFRRVGGQVVAAANGAGRVKVVAAL >Mature_754_residues PGIPADHASSTAAQAVAAASSAPPAAPPAGAAAPPFIAPEPGSQKPVRGSQHVLKSGDAFVVSDTLGDISGHDDGLFVDD MRVLSGWRLTFGGRAPSLLSGATSADNASFTAHLTNRPLPPLGGHEMPEGVIHIERMRVLSENVLYEALTLTNYGTTDAE VPLSISFSADFLDMFEVRGTPRERRGEVAAPQVEAGQVRLRYDGLDGVTRTVRIGFSPAPVRLDTERADYTLTIAAQACV SIYLTVEARIERDGEPAEPAQSLAKASRPGLRRALVQVHRKMRERRRMTTRVRTSNPLFNAWLERSLADLGLLTTQLETG PYPYAGIPWFSTPFGRDAVITSLQMLWLQPSLARGVLRFLAKHQAREASAFRDAEPGKIMHEFRRSEMAATGEVPFALYY GGVDTTPLFVVLAGAYLEQTGDTALIDELWPALERAADWVARACDRNPLGLLDYQKTSERGLANQGWKDSHDSVFHADGR FPEGPIALVEVQAYACAAFDAMATFSTHRGDTGRAAGYAARAKTLREAVETHYWMPEANFYGIALDGRGELCRVLASNAG HLLAFGLPEASRGEAVAATLDSSLFRTGWGVRTLAAGQPRFNPMAYHNGSVWPHDNALAARGFARYGNKTAATELLRALF EAAVSFDMRLPELFCGFPRRRGEPPTAYPVACLPQAWAAGSPFMMLQACLGVSVDAARGEVRIERPALPEGIGWLDLDGL RVGDETVSLTFRRVGGQVVAAANGAGRVKVVAAL
Specific function: Unknown
COG id: COG3408
COG function: function code G; Glycogen debranching enzyme
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 81372; Mature: 81241
Theoretical pI: Translated: 6.72; Mature: 6.72
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPGIPADHASSTAAQAVAAASSAPPAAPPAGAAAPPFIAPEPGSQKPVRGSQHVLKSGDA CCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCE FVVSDTLGDISGHDDGLFVDDMRVLSGWRLTFGGRAPSLLSGATSADNASFTAHLTNRPL EEEECCCCCCCCCCCCEEHHHHHHHCCCEEEECCCCCHHHCCCCCCCCCEEEEEECCCCC PPLGGHEMPEGVIHIERMRVLSENVLYEALTLTNYGTTDAEVPLSISFSADFLDMFEVRG CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCEEEECCCHHHHHHHHCC TPRERRGEVAAPQVEAGQVRLRYDGLDGVTRTVRIGFSPAPVRLDTERADYTLTIAAQAC CCHHHCCCCCCCCCCCCEEEEEECCCCCCEEEEEECCCCCCEEEECCCCCEEEEEEHHCE VSIYLTVEARIERDGEPAEPAQSLAKASRPGLRRALVQVHRKMRERRRMTTRVRTSNPLF EEEEEEEEEEECCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH NAWLERSLADLGLLTTQLETGPYPYAGIPWFSTPFGRDAVITSLQMLWLQPSLARGVLRF HHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHH LAKHQAREASAFRDAEPGKIMHEFRRSEMAATGEVPFALYYGGVDTTPLFVVLAGAYLEQ HHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH TGDTALIDELWPALERAADWVARACDRNPLGLLDYQKTSERGLANQGWKDSHDSVFHADG CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCC RFPEGPIALVEVQAYACAAFDAMATFSTHRGDTGRAAGYAARAKTLREAVETHYWMPEAN CCCCCCEEEEEEHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC FYGIALDGRGELCRVLASNAGHLLAFGLPEASRGEAVAATLDSSLFRTGWGVRTLAAGQP EEEEEECCCHHHHHHHHCCCCCEEEEECCCCCCCCEEEEHHHHHHHHCCCCCEEEECCCC RFNPMAYHNGSVWPHDNALAARGFARYGNKTAATELLRALFEAAVSFDMRLPELFCGFPR CCCCEEEECCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCH RRGEPPTAYPVACLPQAWAAGSPFMMLQACLGVSVDAARGEVRIERPALPEGIGWLDLDG HCCCCCCCCCHHHCCHHHCCCCHHHHHHHHHCCCEECCCCCEEEECCCCCCCCCEEECCC LRVGDETVSLTFRRVGGQVVAAANGAGRVKVVAAL EEECCHHHEEEEECCCCEEEEECCCCCCEEEEEEC >Mature Secondary Structure PGIPADHASSTAAQAVAAASSAPPAAPPAGAAAPPFIAPEPGSQKPVRGSQHVLKSGDA CCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCE FVVSDTLGDISGHDDGLFVDDMRVLSGWRLTFGGRAPSLLSGATSADNASFTAHLTNRPL EEEECCCCCCCCCCCCEEHHHHHHHCCCEEEECCCCCHHHCCCCCCCCCEEEEEECCCCC PPLGGHEMPEGVIHIERMRVLSENVLYEALTLTNYGTTDAEVPLSISFSADFLDMFEVRG CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCEEEECCCHHHHHHHHCC TPRERRGEVAAPQVEAGQVRLRYDGLDGVTRTVRIGFSPAPVRLDTERADYTLTIAAQAC CCHHHCCCCCCCCCCCCEEEEEECCCCCCEEEEEECCCCCCEEEECCCCCEEEEEEHHCE VSIYLTVEARIERDGEPAEPAQSLAKASRPGLRRALVQVHRKMRERRRMTTRVRTSNPLF EEEEEEEEEEECCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH NAWLERSLADLGLLTTQLETGPYPYAGIPWFSTPFGRDAVITSLQMLWLQPSLARGVLRF HHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHH LAKHQAREASAFRDAEPGKIMHEFRRSEMAATGEVPFALYYGGVDTTPLFVVLAGAYLEQ HHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH TGDTALIDELWPALERAADWVARACDRNPLGLLDYQKTSERGLANQGWKDSHDSVFHADG CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCC RFPEGPIALVEVQAYACAAFDAMATFSTHRGDTGRAAGYAARAKTLREAVETHYWMPEAN CCCCCCEEEEEEHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC FYGIALDGRGELCRVLASNAGHLLAFGLPEASRGEAVAATLDSSLFRTGWGVRTLAAGQP EEEEEECCCHHHHHHHHCCCCCEEEEECCCCCCCCEEEEHHHHHHHHCCCCCEEEECCCC RFNPMAYHNGSVWPHDNALAARGFARYGNKTAATELLRALFEAAVSFDMRLPELFCGFPR CCCCEEEECCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCH RRGEPPTAYPVACLPQAWAAGSPFMMLQACLGVSVDAARGEVRIERPALPEGIGWLDLDG HCCCCCCCCCHHHCCHHHCCCCHHHHHHHHHCCCEECCCCCEEEECCCCCCCCCEEECCC LRVGDETVSLTFRRVGGQVVAAANGAGRVKVVAAL EEECCHHHEEEEECCCCEEEEECCCCCCEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA