Definition | Burkholderia glumae BGR1 chromosome chromosome 2, complete sequence. |
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Accession | NC_012721 |
Length | 2,827,333 |
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The map label for this gene is yfeT [C]
Identifier: 238025145
GI number: 238025145
Start: 2260028
End: 2260888
Strand: Reverse
Name: yfeT [C]
Synonym: bglu_2g18100
Alternate gene names: 238025145
Gene position: 2260888-2260028 (Counterclockwise)
Preceding gene: 238025146
Following gene: 238025144
Centisome position: 79.97
GC content: 71.2
Gene sequence:
>861_bases ATGCCCGCCAATTTCGACGAACTCGCGTCCCTGATCCGGGCGCAATTTTCCGAGCTGAGCCCGCAGTTCCAGGCCGGCGC CGCGTTTCTGCTCGATCACCCGGACGAGGTCGCGGTGTCGTCGATGCGCAAGCTCGCACAGCGCGCACAGGTGCAGCCGG CCTCGCTGGTGCGGCTCGCGCAGCAGTTCGGCTTTCCCGGCTGGAACGAGTTGCGCGACCTGTTCGTGGCGCGCGTGCGC GCACGGCCGGCGCCGATGACGCAGCGCGCGCGCTCGCTCGTGAAGCCGGGCGCGAAGGCCGCGCTGTCGCACGATCTGCT GGCCGCGCAGCAGCAGAACCTGGCCGACGCGGCCGCGCGCAACCAACGCGCGCTGGCCGAGGCGGCGCGGCTGATCCGCA AGGCGCCGCACGTCCACGTGGCGGGCTTTCGCTCCTGCTATCCGGTGGCGTTCGGGTTCGTCTATGCGTACCGGCTGTTC CGGCCCAGCGTGTCGCTGCTCGCGGGCGTGGCGGGTTCGCTCGAGATGGAGCTGCGCGCGATCGGCCAGGCCAGCGTGAC GGTGATCGTCAGCTTCGCGCCTTACTCGACCGAGGCAACGCGGGTGGCGAACATCGCGCGCGAGCGCGGCAGCCGGATCG TGGCGATCACCGACAGCGCCGCGTCGCCGGTCGCGCTGGCTGCCGATGCGACGCTGATCTTCGGGCACGACAGCCCATCG TTCTTTCCTTCGCTGGTGGCCGCGCACGCGCTCGCAGAGGCACTGGTCGCCCAGTTGCTGGCGCTGGAAGGCGGCGGGGC CGTGGCCGCGCTCGAACGCAGTGAAGCGGAACTGCATGCGCGCGGTGCCTACACGGGCTGA
Upstream 100 bases:
>100_bases CGCGTCGTGCCCGGCACCCCGCCGGCGCTCCGCCGGCGCCCCGGCGGGCGGCGCGCGACCCGGTGATACCATGAGCGCCC CGCTCAAGCCGCTCGTGACC
Downstream 100 bases:
>100_bases ACCGCGCCGCGTCTGCCGACATCCCGGGATCGTTTCCCGGGTGGCGGACGAATGTCACGGCGAGAAAAATATCGATATTC TCAGCGCCGAGCTTTTTCAA
Product: RpiR family transcriptional regulator
Products: NA
Alternate protein names: Transcriptional Regulator RpiR Family; Transcriptional Regulator; Sugar Isomerase; SIS Family Regulator; Bifunctional Protein Glk; Transcription Regulator Protein; GlvR Family Transcriptional Regulator; RpiR Family Regulatory; Transcriptional Regulator Protein; SIS Domain-Containing Protein; SIS Domain Protein; Transcriptional Regulator RpiR Family Protein
Number of amino acids: Translated: 286; Mature: 285
Protein sequence:
>286_residues MPANFDELASLIRAQFSELSPQFQAGAAFLLDHPDEVAVSSMRKLAQRAQVQPASLVRLAQQFGFPGWNELRDLFVARVR ARPAPMTQRARSLVKPGAKAALSHDLLAAQQQNLADAAARNQRALAEAARLIRKAPHVHVAGFRSCYPVAFGFVYAYRLF RPSVSLLAGVAGSLEMELRAIGQASVTVIVSFAPYSTEATRVANIARERGSRIVAITDSAASPVALAADATLIFGHDSPS FFPSLVAAHALAEALVAQLLALEGGGAVAALERSEAELHARGAYTG
Sequences:
>Translated_286_residues MPANFDELASLIRAQFSELSPQFQAGAAFLLDHPDEVAVSSMRKLAQRAQVQPASLVRLAQQFGFPGWNELRDLFVARVR ARPAPMTQRARSLVKPGAKAALSHDLLAAQQQNLADAAARNQRALAEAARLIRKAPHVHVAGFRSCYPVAFGFVYAYRLF RPSVSLLAGVAGSLEMELRAIGQASVTVIVSFAPYSTEATRVANIARERGSRIVAITDSAASPVALAADATLIFGHDSPS FFPSLVAAHALAEALVAQLLALEGGGAVAALERSEAELHARGAYTG >Mature_285_residues PANFDELASLIRAQFSELSPQFQAGAAFLLDHPDEVAVSSMRKLAQRAQVQPASLVRLAQQFGFPGWNELRDLFVARVRA RPAPMTQRARSLVKPGAKAALSHDLLAAQQQNLADAAARNQRALAEAARLIRKAPHVHVAGFRSCYPVAFGFVYAYRLFR PSVSLLAGVAGSLEMELRAIGQASVTVIVSFAPYSTEATRVANIARERGSRIVAITDSAASPVALAADATLIFGHDSPSF FPSLVAAHALAEALVAQLLALEGGGAVAALERSEAELHARGAYTG
Specific function: Unknown
COG id: COG1737
COG function: function code K; Transcriptional regulators
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: 10-20 Molecules/Cell [C]
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30378; Mature: 30247
Theoretical pI: Translated: 10.05; Mature: 10.05
Prosite motif: PS51071 HTH_RPIR
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPANFDELASLIRAQFSELSPQFQAGAAFLLDHPDEVAVSSMRKLAQRAQVQPASLVRLA CCCCHHHHHHHHHHHHHHCCCCHHCCCEEEECCCHHHHHHHHHHHHHHHCCCHHHHHHHH QQFGFPGWNELRDLFVARVRARPAPMTQRARSLVKPGAKAALSHDLLAAQQQNLADAAAR HHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH NQRALAEAARLIRKAPHVHVAGFRSCYPVAFGFVYAYRLFRPSVSLLAGVAGSLEMELRA HHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHH IGQASVTVIVSFAPYSTEATRVANIARERGSRIVAITDSAASPVALAADATLIFGHDSPS CCCCEEEEEEEECCCCCHHHHHHHHHHHHCCEEEEEECCCCCCEEEECCEEEEEECCCCH FFPSLVAAHALAEALVAQLLALEGGGAVAALERSEAELHARGAYTG HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHCCCCCC >Mature Secondary Structure PANFDELASLIRAQFSELSPQFQAGAAFLLDHPDEVAVSSMRKLAQRAQVQPASLVRLA CCCHHHHHHHHHHHHHHCCCCHHCCCEEEECCCHHHHHHHHHHHHHHHCCCHHHHHHHH QQFGFPGWNELRDLFVARVRARPAPMTQRARSLVKPGAKAALSHDLLAAQQQNLADAAAR HHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH NQRALAEAARLIRKAPHVHVAGFRSCYPVAFGFVYAYRLFRPSVSLLAGVAGSLEMELRA HHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHH IGQASVTVIVSFAPYSTEATRVANIARERGSRIVAITDSAASPVALAADATLIFGHDSPS CCCCEEEEEEEECCCCCHHHHHHHHHHHHCCEEEEEECCCCCCEEEECCEEEEEECCCCH FFPSLVAAHALAEALVAQLLALEGGGAVAALERSEAELHARGAYTG HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA