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The map label for this gene is ydiK [C]

Identifier: 238025108

GI number: 238025108

Start: 2210552

End: 2211622

Strand: Reverse

Name: ydiK [C]

Synonym: bglu_2g17670

Alternate gene names: 238025108

Gene position: 2211622-2210552 (Counterclockwise)

Preceding gene: 238025109

Following gene: 238025107

Centisome position: 78.22

GC content: 70.68

Gene sequence:

>1071_bases
ATGATCCAGTCTTCCCGTTCCATGCCGGACTCCGGCCGCCCGAAAGCGCAGGCGATCGCGCTCGGCGTGCTCTACACGGT
ACTCGTCGCGCTCGCGCTGTGGATCATTCGCGCGTTCCTGCCGGCCATCGCCTGGGCCGGCGTGATCGCGATCGCGCTAT
GGCCCGCGCTGCGCCGGATCGACGCGATTCGCTGGCTGAGCGGGCGCCGCACCTTGGTTGCGATCCTGCTGACCTCGGCG
GTCGGCCTGCTGCTGGTGGCGCCGGTGGCGATCGCGGTGGCGCAGGCCGCCGGGCAGATCCACGACGTGTTCGCCTGGGT
TCACGACGCGCGGGCCAACGGCATTCCGCTGCCCGATGCGGTTTATCACCTGCCGTTCGGTTCGAGGCAGGTGGCCGCCT
GGTGGCAGGCCAATCTGGCTCAGCCGCTGCATGCGCCGGCCGGCGTCAAGGGCATGAACGGCGAGGCGTTCGTCTCGTAC
GGCAAGGCGTTCGGCTCGCACGTGTTGCATGCGGCCGTGTTGTTCGGCTTCATGCTGGTCACGCTGTTCGTGATCTTCCG
GGCCGGCCCGCGCATGTCCGAGTCGCTGATGCGCGGCGTGCAGCGCGCGTTCGGCGCGAACGGCGCGTCGCTGACGCAGC
GCATGGTGTCGGCAGTCTACGGCACCGTGACGGGCCTGGTGGTGGTCGGGCTCGGCGAGGGCGCGCTGCTCGGCGTCGCC
TACGCGGTGGCGGGCGTGTCGCATGCGGCGCTGCTCGGGCTCGTGACCGCGGTGGCGGCGATGCTGCCGTTCTGCGCGCC
GGTGGTGTTCTGCGGTGCCGCGCTGTGGCTGTTCCTCGTCAAGGGAGCCGCGGCCTGGGCGATCGGCCTGGCCGTGTTCG
GCGCGGTGGTGGTGTTCGTGGCCGAGCATTTCGTGCGGCCGGTGCTGATTGGCGGCTCCGCGCGGCTGCCGTTCCTGCTG
GTGCTGTTCGGCATCCTCGGCGGCGCCGAGACGTTCGGCCTGCTCGGCCTCTTCATCGGGCCGGCGCTGATGACGGTGCT
CACCGTGCTGTGGAGCGAGTGGGTCGAATAG

Upstream 100 bases:

>100_bases
TTGGCGTCATCGCTCAAGCCGCCTTCAAGCCGATCGGGAACGTCCTTTAAGATGGCGGCAGCGGCAGCCCCGTTCCTTAC
GTCCTGACGAGAGTGTTCCG

Downstream 100 bases:

>100_bases
GCGGCGCGCCGATGGTTGCGCGCGCATGCGTCGTACCGCGCCGACCGGTGCGGGCGCAGATAACTTTACAGAATTCCACA
TGGATCGGGGCGAGGTGGAT

Product: permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 356; Mature: 356

Protein sequence:

>356_residues
MIQSSRSMPDSGRPKAQAIALGVLYTVLVALALWIIRAFLPAIAWAGVIAIALWPALRRIDAIRWLSGRRTLVAILLTSA
VGLLLVAPVAIAVAQAAGQIHDVFAWVHDARANGIPLPDAVYHLPFGSRQVAAWWQANLAQPLHAPAGVKGMNGEAFVSY
GKAFGSHVLHAAVLFGFMLVTLFVIFRAGPRMSESLMRGVQRAFGANGASLTQRMVSAVYGTVTGLVVVGLGEGALLGVA
YAVAGVSHAALLGLVTAVAAMLPFCAPVVFCGAALWLFLVKGAAAWAIGLAVFGAVVVFVAEHFVRPVLIGGSARLPFLL
VLFGILGGAETFGLLGLFIGPALMTVLTVLWSEWVE

Sequences:

>Translated_356_residues
MIQSSRSMPDSGRPKAQAIALGVLYTVLVALALWIIRAFLPAIAWAGVIAIALWPALRRIDAIRWLSGRRTLVAILLTSA
VGLLLVAPVAIAVAQAAGQIHDVFAWVHDARANGIPLPDAVYHLPFGSRQVAAWWQANLAQPLHAPAGVKGMNGEAFVSY
GKAFGSHVLHAAVLFGFMLVTLFVIFRAGPRMSESLMRGVQRAFGANGASLTQRMVSAVYGTVTGLVVVGLGEGALLGVA
YAVAGVSHAALLGLVTAVAAMLPFCAPVVFCGAALWLFLVKGAAAWAIGLAVFGAVVVFVAEHFVRPVLIGGSARLPFLL
VLFGILGGAETFGLLGLFIGPALMTVLTVLWSEWVE
>Mature_356_residues
MIQSSRSMPDSGRPKAQAIALGVLYTVLVALALWIIRAFLPAIAWAGVIAIALWPALRRIDAIRWLSGRRTLVAILLTSA
VGLLLVAPVAIAVAQAAGQIHDVFAWVHDARANGIPLPDAVYHLPFGSRQVAAWWQANLAQPLHAPAGVKGMNGEAFVSY
GKAFGSHVLHAAVLFGFMLVTLFVIFRAGPRMSESLMRGVQRAFGANGASLTQRMVSAVYGTVTGLVVVGLGEGALLGVA
YAVAGVSHAALLGLVTAVAAMLPFCAPVVFCGAALWLFLVKGAAAWAIGLAVFGAVVVFVAEHFVRPVLIGGSARLPFLL
VLFGILGGAETFGLLGLFIGPALMTVLTVLWSEWVE

Specific function: Unknown

COG id: COG0628

COG function: function code R; Predicted permease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0118 (perM) family [H]

Homologues:

Organism=Escherichia coli, GI1787979, Length=358, Percent_Identity=30.1675977653631, Blast_Score=110, Evalue=1e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002549 [H]

Pfam domain/function: PF01594 UPF0118 [H]

EC number: NA

Molecular weight: Translated: 37244; Mature: 37244

Theoretical pI: Translated: 10.70; Mature: 10.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIQSSRSMPDSGRPKAQAIALGVLYTVLVALALWIIRAFLPAIAWAGVIAIALWPALRRI
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DAIRWLSGRRTLVAILLTSAVGLLLVAPVAIAVAQAAGQIHDVFAWVHDARANGIPLPDA
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH
VYHLPFGSRQVAAWWQANLAQPLHAPAGVKGMNGEAFVSYGKAFGSHVLHAAVLFGFMLV
HEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
TLFVIFRAGPRMSESLMRGVQRAFGANGASLTQRMVSAVYGTVTGLVVVGLGEGALLGVA
HHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHH
YAVAGVSHAALLGLVTAVAAMLPFCAPVVFCGAALWLFLVKGAAAWAIGLAVFGAVVVFV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AEHFVRPVLIGGSARLPFLLVLFGILGGAETFGLLGLFIGPALMTVLTVLWSEWVE
HHHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MIQSSRSMPDSGRPKAQAIALGVLYTVLVALALWIIRAFLPAIAWAGVIAIALWPALRRI
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DAIRWLSGRRTLVAILLTSAVGLLLVAPVAIAVAQAAGQIHDVFAWVHDARANGIPLPDA
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH
VYHLPFGSRQVAAWWQANLAQPLHAPAGVKGMNGEAFVSYGKAFGSHVLHAAVLFGFMLV
HEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
TLFVIFRAGPRMSESLMRGVQRAFGANGASLTQRMVSAVYGTVTGLVVVGLGEGALLGVA
HHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHH
YAVAGVSHAALLGLVTAVAAMLPFCAPVVFCGAALWLFLVKGAAAWAIGLAVFGAVVVFV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AEHFVRPVLIGGSARLPFLLVLFGILGGAETFGLLGLFIGPALMTVLTVLWSEWVE
HHHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12522265 [H]