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The map label for this gene is ycdC [C]

Identifier: 238024886

GI number: 238024886

Start: 1938486

End: 1939121

Strand: Direct

Name: ycdC [C]

Synonym: bglu_2g15290

Alternate gene names: 238024886

Gene position: 1938486-1939121 (Clockwise)

Preceding gene: 238024884

Following gene: 238024887

Centisome position: 68.56

GC content: 72.48

Gene sequence:

>636_bases
ATGGATTCCCACGCTCCCCCCACCCGCCTGACCGACCGGAAACGCGCCGCGATCGTCGGCGCGGCGATCGACGAATTCCT
CTCGGCCGGCTACGACGCGACCAGCATGGACCGCATCGCGGCCAGTGCGCAGGTGTCGAAGCGCACCGTCTACAACCACT
TCCCGAGCAAGGAGGCGCTGTTCGCGGCGATCCTGCAGCGGCTGTGGGAGGCGACGCGCGCCGGCGACGCGCCCGCCTAC
CGGCCCGCCGCGCCGCTGCGCGGCCAATTGATCGAACTGCTGCTGCGCAAGCTGCGGCTGCTCAGCGACGAAACCTTCCT
GGCGCTGGTGCGCGTCGCGATCGCGGCCGCGATGCATTCCCCCGAACGGGCGAGGGAGATGGTGGTGCGGCTCGGCGAGC
GCGAGGAGGACCTGACGGTCTGGGTTCGCGAGGCCGCCGCCGCCGGGCGCCTCGCCACCGACGATGCGCCGTTTGCCGCG
CAGCAGTTGCAGGGGCTCGTGAAATCGTTCGCCTTCTGGCCGCAGGTGGCGATGGGCCAGCCGGCCGTGGACGGCGAGGC
GCGCCTGCGGCTCGCGGAAACGACGGCCGACCTGTTCCTCGCGCGCTACGCGCGCGGCGAGACCGGCGGCGCTTGA

Upstream 100 bases:

>100_bases
GCGGGTAACGGAAGTCATCGAATCGGTCCGGCGCAAAAAGTAGACTCTCCAGTGTAGTTTATTTTCGAGAAAAGTAAACC
GTCCGGTATAAAATTTGCCG

Downstream 100 bases:

>100_bases
GCCGGCGCCGGGGCGGCCCGGCTTGCGCCGCGCGTCCCGCCAGGCTGCGCAAGCCCCCGCATCATGCGCCTTGCGGCCGG
CCCCGCTTGCGATTCGCCGG

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator; Transcriptional Regulator TetR Family; Transcriptional Regulator TetR Family Protein; Regulatory Protein TetR; TetR Family Regulatory Protein

Number of amino acids: Translated: 211; Mature: 211

Protein sequence:

>211_residues
MDSHAPPTRLTDRKRAAIVGAAIDEFLSAGYDATSMDRIAASAQVSKRTVYNHFPSKEALFAAILQRLWEATRAGDAPAY
RPAAPLRGQLIELLLRKLRLLSDETFLALVRVAIAAAMHSPERAREMVVRLGEREEDLTVWVREAAAAGRLATDDAPFAA
QQLQGLVKSFAFWPQVAMGQPAVDGEARLRLAETTADLFLARYARGETGGA

Sequences:

>Translated_211_residues
MDSHAPPTRLTDRKRAAIVGAAIDEFLSAGYDATSMDRIAASAQVSKRTVYNHFPSKEALFAAILQRLWEATRAGDAPAY
RPAAPLRGQLIELLLRKLRLLSDETFLALVRVAIAAAMHSPERAREMVVRLGEREEDLTVWVREAAAAGRLATDDAPFAA
QQLQGLVKSFAFWPQVAMGQPAVDGEARLRLAETTADLFLARYARGETGGA
>Mature_211_residues
MDSHAPPTRLTDRKRAAIVGAAIDEFLSAGYDATSMDRIAASAQVSKRTVYNHFPSKEALFAAILQRLWEATRAGDAPAY
RPAAPLRGQLIELLLRKLRLLSDETFLALVRVAIAAAMHSPERAREMVVRLGEREEDLTVWVREAAAAGRLATDDAPFAA
QQLQGLVKSFAFWPQVAMGQPAVDGEARLRLAETTADLFLARYARGETGGA

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23001; Mature: 23001

Theoretical pI: Translated: 8.93; Mature: 8.93

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDSHAPPTRLTDRKRAAIVGAAIDEFLSAGYDATSMDRIAASAQVSKRTVYNHFPSKEAL
CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHH
FAAILQRLWEATRAGDAPAYRPAAPLRGQLIELLLRKLRLLSDETFLALVRVAIAAAMHS
HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCC
PERAREMVVRLGEREEDLTVWVREAAAAGRLATDDAPFAAQQLQGLVKSFAFWPQVAMGQ
HHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
PAVDGEARLRLAETTADLFLARYARGETGGA
CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MDSHAPPTRLTDRKRAAIVGAAIDEFLSAGYDATSMDRIAASAQVSKRTVYNHFPSKEAL
CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHH
FAAILQRLWEATRAGDAPAYRPAAPLRGQLIELLLRKLRLLSDETFLALVRVAIAAAMHS
HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCC
PERAREMVVRLGEREEDLTVWVREAAAAGRLATDDAPFAAQQLQGLVKSFAFWPQVAMGQ
HHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
PAVDGEARLRLAETTADLFLARYARGETGGA
CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA