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The map label for this gene is rbcR [H]

Identifier: 238024766

GI number: 238024766

Start: 1794646

End: 1795545

Strand: Direct

Name: rbcR [H]

Synonym: bglu_2g14040

Alternate gene names: 238024766

Gene position: 1794646-1795545 (Clockwise)

Preceding gene: 238024764

Following gene: 238024769

Centisome position: 63.47

GC content: 71.67

Gene sequence:

>900_bases
ATGCGATTCGACCTGACCGACCTGCGTCTCTTCCTGAACGTCTGCCATGCCGGCAGCATCACGGGCGGCGCCGAACGCAC
CTGCCTCACGCTGCAGTCGGCGAGCGAGCGAATCCGCGGCATGGAGGACACGCTCGGCGTGCCGCTGCTGCACCGCACGC
AGCGCGGCACGCAGCCCACCGACGCGGGCCGTTCGCTCGAACATCACGCGCGGGTCGTGCTGCAGCAGATCGAGCAGATG
CACGGCGAGCTGCAGCAGTTCGGCGACGGGCTGCGCGCGCGCATCCGCCTGCTCTGCAACACCGCCTCGCTCAGCGAATA
CCTGCCCGACGCGCTGGCCGGCTACCTGCCGCGGCATCCGGGCATCTCGATCAGCGTCGAGGAACGCTCGAGCGAGGAGA
TCGTCCACGCGCTCCGCGCCCGCAGCGCCGAGGTGGGCATCGTCGCCGATTCGGTCGGGCTCGACGGCCTCGAACAGCTG
CCGTTCCGCGAGGACTGGCTGCTGGTGGTCGCCGCGGCGGCCGATCCGCTGGCCGCGCGCGCCTCGGTATCGTTCAGCGA
GATCGTGGACGCCGCCTTCGTGGGCCTGACCGACGGCAGCGCGCTGCACGCGCATCTGGCCGAGCAGGCGAAGGCGCTGG
GCAAGCGCCTCGCCTATCGCGCGCAGCTGCGCAGCTTCGATGCGATCTGCCGCGTGATCGAGAGCGGCGTGGGCATCGGC
GTGGTGTCGCGGCACGCGGCGCATCGCGCGCTGGCCACCCTGCAGCTCGCCACCGTGGAGCTGACCGACGCCTGGGCGCA
CCGCCGGCTCGTGCTGTGCGCGCGCGATTTTTCCGCGCTGCCGAACTACACGCGCGACTTCGTCGCCTTCCTGACCGAGG
GCGCGCCGCGCAACGCCTGA

Upstream 100 bases:

>100_bases
TCGCCGGCCGCGCTTGGCCGGCAGGACCGCGCCCGCCCCCGGCGTGGGCTCGCGCCCGCGTCACCGCCCACGCCCTCTTC
ATGCCGCCACGGAGGCGACC

Downstream 100 bases:

>100_bases
TCTGGCCGGGTCGACAAATCGCCGTTGGGCGCGCAACGAACCCGCGTCGCCCGGCAAGCGGACCCACGGCCGCCGGGCCA
GGCCGGCACCCACGCAAGCC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 299

Protein sequence:

>299_residues
MRFDLTDLRLFLNVCHAGSITGGAERTCLTLQSASERIRGMEDTLGVPLLHRTQRGTQPTDAGRSLEHHARVVLQQIEQM
HGELQQFGDGLRARIRLLCNTASLSEYLPDALAGYLPRHPGISISVEERSSEEIVHALRARSAEVGIVADSVGLDGLEQL
PFREDWLLVVAAAADPLAARASVSFSEIVDAAFVGLTDGSALHAHLAEQAKALGKRLAYRAQLRSFDAICRVIESGVGIG
VVSRHAAHRALATLQLATVELTDAWAHRRLVLCARDFSALPNYTRDFVAFLTEGAPRNA

Sequences:

>Translated_299_residues
MRFDLTDLRLFLNVCHAGSITGGAERTCLTLQSASERIRGMEDTLGVPLLHRTQRGTQPTDAGRSLEHHARVVLQQIEQM
HGELQQFGDGLRARIRLLCNTASLSEYLPDALAGYLPRHPGISISVEERSSEEIVHALRARSAEVGIVADSVGLDGLEQL
PFREDWLLVVAAAADPLAARASVSFSEIVDAAFVGLTDGSALHAHLAEQAKALGKRLAYRAQLRSFDAICRVIESGVGIG
VVSRHAAHRALATLQLATVELTDAWAHRRLVLCARDFSALPNYTRDFVAFLTEGAPRNA
>Mature_299_residues
MRFDLTDLRLFLNVCHAGSITGGAERTCLTLQSASERIRGMEDTLGVPLLHRTQRGTQPTDAGRSLEHHARVVLQQIEQM
HGELQQFGDGLRARIRLLCNTASLSEYLPDALAGYLPRHPGISISVEERSSEEIVHALRARSAEVGIVADSVGLDGLEQL
PFREDWLLVVAAAADPLAARASVSFSEIVDAAFVGLTDGSALHAHLAEQAKALGKRLAYRAQLRSFDAICRVIESGVGIG
VVSRHAAHRALATLQLATVELTDAWAHRRLVLCARDFSALPNYTRDFVAFLTEGAPRNA

Specific function: Trans-acting transcriptional regulator of RuBisCO genes (rbcAB) expression [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693105, Length=261, Percent_Identity=20.6896551724138, Blast_Score=85, Evalue=6e-18,
Organism=Escherichia coli, GI157672245, Length=190, Percent_Identity=29.4736842105263, Blast_Score=81, Evalue=7e-17,
Organism=Escherichia coli, GI1786713, Length=312, Percent_Identity=27.2435897435897, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1787530, Length=289, Percent_Identity=23.5294117647059, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1788297, Length=244, Percent_Identity=26.2295081967213, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32483; Mature: 32483

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFDLTDLRLFLNVCHAGSITGGAERTCLTLQSASERIRGMEDTLGVPLLHRTQRGTQPT
CCCCHHHHHHHHHHHHCCCCCCCCCHHHEEHHHHHHHHCCCHHHCCCCHHHHHCCCCCCC
DAGRSLEHHARVVLQQIEQMHGELQQFGDGLRARIRLLCNTASLSEYLPDALAGYLPRHP
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
GISISVEERSSEEIVHALRARSAEVGIVADSVGLDGLEQLPFREDWLLVVAAAADPLAAR
CCEEEECCCCHHHHHHHHHHCCCCCEEEECCCCCCCHHHCCCCCCEEEEEEECCCCHHHH
ASVSFSEIVDAAFVGLTDGSALHAHLAEQAKALGKRLAYRAQLRSFDAICRVIESGVGIG
HCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
VVSRHAAHRALATLQLATVELTDAWAHRRLVLCARDFSALPNYTRDFVAFLTEGAPRNA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHHHHCCCHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MRFDLTDLRLFLNVCHAGSITGGAERTCLTLQSASERIRGMEDTLGVPLLHRTQRGTQPT
CCCCHHHHHHHHHHHHCCCCCCCCCHHHEEHHHHHHHHCCCHHHCCCCHHHHHCCCCCCC
DAGRSLEHHARVVLQQIEQMHGELQQFGDGLRARIRLLCNTASLSEYLPDALAGYLPRHP
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
GISISVEERSSEEIVHALRARSAEVGIVADSVGLDGLEQLPFREDWLLVVAAAADPLAAR
CCEEEECCCCHHHHHHHHHHCCCCCEEEECCCCCCCHHHCCCCCCEEEEEEECCCCHHHH
ASVSFSEIVDAAFVGLTDGSALHAHLAEQAKALGKRLAYRAQLRSFDAICRVIESGVGIG
HCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
VVSRHAAHRALATLQLATVELTDAWAHRRLVLCARDFSALPNYTRDFVAFLTEGAPRNA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHHHHCCCHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1907267; 2708310 [H]