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The map label for this gene is yafC [H]

Identifier: 238024657

GI number: 238024657

Start: 1639711

End: 1640736

Strand: Reverse

Name: yafC [H]

Synonym: bglu_2g12730

Alternate gene names: 238024657

Gene position: 1640736-1639711 (Counterclockwise)

Preceding gene: 238024658

Following gene: 238024655

Centisome position: 58.03

GC content: 71.35

Gene sequence:

>1026_bases
ATGGACACGTTGCAGAACATGCGGGTATTCGCCCGTGTGGTGGAAGCCGGCAGCTTCACGGCCGCCGCGCTGTCGCTGAA
CTCGACCACCGGCGCCACCTCGCGCGCCGTCACCGAACTCGAAGCGCGGTTGCGCACCCGGCTGCTGAACCGCTCGACGC
GCCGGCTGTCGCTGACGCCTGCCGGCGAGCGCTACCTGCTGCGCTGTCGGCAGATCCTCGCCGACGTCGGCGCCGCGGAG
GAAGAGGCGAGCCGCGCGCACGAGCGCCCGTCCGGCGTGTTGCGGCTGCACAGCTTCGCGAGCATCGGCCAGCATTACGT
GATGCCGGCGCTGACCCGCTACCGCGAGCGGCACCACGGCGTGTCGGTCGAGCTGACGCTGTCGCAGCGCATGCCCGACC
TGTTCGACGGCAGCAGCGACATGGCGGTGGTCACCGCCTCGTCGCTGCCCGACTCGGAACTCGTCTCGCATTGCCTCGGC
GAAACCTTCAGCATCCTCTGCGCGTCGCCGTCCTACCTGCGCGAGCGCGGCGCGCCGTCCAGCCCGTCCGAGCTCGTCGA
TCACGACTGCCTGATGCTGCAGACGCCGGCCTTTGCGACCCACGACTGGCTGCTGGAGAGCCGCACCGGCCAGGTCGAGC
AAATCCGCGTGCGCGGCCCGGTCCAGACCAACACCGCCGAGTCGCTGGCCATCGCGATCCGCGACGGGATCGGCATCGGC
ATGCTGCCGCTGTACGCCGCGATCGGACTGCTGCGCGACGGCTCGCTGATGCGCGTGCTGCCCGCCCATACGCTGCAGCG
CATGCGCATCTACGCGCTGTATCCGTCGCGCCGCTTCGTCGATGCGAAAGTGCGCACCTGGGTGGCGTTCCTGCGCGCCG
ACCTGCCCGACCGGATCGCGCGCGACGAGGCGATGCTGGCCTCGCTCGACGCGCGGATGCGGGCCGCGCTGGCTTCGACG
CGGCGCCCTGGTGTGGCCGATGCGGCCGACGAGGTTGACGAGTCCGGGGCCGCCGCCGCGCACTGA

Upstream 100 bases:

>100_bases
GGCCACGCGGGTAAGCCAGAATTGCCGGACAGGTAACAATCGTGCGGTTGATGCGACGGACAATGGCGTCCTTCTTTCGT
ACCGAAGTCGTTCCCGATCC

Downstream 100 bases:

>100_bases
TCGCCGGGGTTCACGGCGCGCGCTTGCCGGCTGCGGCACCGGCCGCGGCGTTCTGGCCGTAGGCGTTGCGCCCCGCCTCG
TCGGCGGCCCGCTTCCTGGC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 341; Mature: 341

Protein sequence:

>341_residues
MDTLQNMRVFARVVEAGSFTAAALSLNSTTGATSRAVTELEARLRTRLLNRSTRRLSLTPAGERYLLRCRQILADVGAAE
EEASRAHERPSGVLRLHSFASIGQHYVMPALTRYRERHHGVSVELTLSQRMPDLFDGSSDMAVVTASSLPDSELVSHCLG
ETFSILCASPSYLRERGAPSSPSELVDHDCLMLQTPAFATHDWLLESRTGQVEQIRVRGPVQTNTAESLAIAIRDGIGIG
MLPLYAAIGLLRDGSLMRVLPAHTLQRMRIYALYPSRRFVDAKVRTWVAFLRADLPDRIARDEAMLASLDARMRAALAST
RRPGVADAADEVDESGAAAAH

Sequences:

>Translated_341_residues
MDTLQNMRVFARVVEAGSFTAAALSLNSTTGATSRAVTELEARLRTRLLNRSTRRLSLTPAGERYLLRCRQILADVGAAE
EEASRAHERPSGVLRLHSFASIGQHYVMPALTRYRERHHGVSVELTLSQRMPDLFDGSSDMAVVTASSLPDSELVSHCLG
ETFSILCASPSYLRERGAPSSPSELVDHDCLMLQTPAFATHDWLLESRTGQVEQIRVRGPVQTNTAESLAIAIRDGIGIG
MLPLYAAIGLLRDGSLMRVLPAHTLQRMRIYALYPSRRFVDAKVRTWVAFLRADLPDRIARDEAMLASLDARMRAALAST
RRPGVADAADEVDESGAAAAH
>Mature_341_residues
MDTLQNMRVFARVVEAGSFTAAALSLNSTTGATSRAVTELEARLRTRLLNRSTRRLSLTPAGERYLLRCRQILADVGAAE
EEASRAHERPSGVLRLHSFASIGQHYVMPALTRYRERHHGVSVELTLSQRMPDLFDGSSDMAVVTASSLPDSELVSHCLG
ETFSILCASPSYLRERGAPSSPSELVDHDCLMLQTPAFATHDWLLESRTGQVEQIRVRGPVQTNTAESLAIAIRDGIGIG
MLPLYAAIGLLRDGSLMRVLPAHTLQRMRIYALYPSRRFVDAKVRTWVAFLRADLPDRIARDEAMLASLDARMRAALAST
RRPGVADAADEVDESGAAAAH

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786401, Length=290, Percent_Identity=33.448275862069, Blast_Score=154, Evalue=7e-39,
Organism=Escherichia coli, GI1789639, Length=286, Percent_Identity=32.5174825174825, Blast_Score=137, Evalue=1e-33,
Organism=Escherichia coli, GI145693193, Length=292, Percent_Identity=30.1369863013699, Blast_Score=135, Evalue=3e-33,
Organism=Escherichia coli, GI1789440, Length=298, Percent_Identity=29.1946308724832, Blast_Score=135, Evalue=3e-33,
Organism=Escherichia coli, GI87081978, Length=289, Percent_Identity=30.7958477508651, Blast_Score=127, Evalue=1e-30,
Organism=Escherichia coli, GI1787589, Length=279, Percent_Identity=29.0322580645161, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI1787128, Length=292, Percent_Identity=26.027397260274, Blast_Score=106, Evalue=3e-24,
Organism=Escherichia coli, GI1788481, Length=279, Percent_Identity=25.4480286738351, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1789173, Length=241, Percent_Identity=26.9709543568465, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1787879, Length=154, Percent_Identity=31.8181818181818, Blast_Score=65, Evalue=8e-12,
Organism=Escherichia coli, GI1787601, Length=169, Percent_Identity=27.2189349112426, Blast_Score=63, Evalue=4e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 37347; Mature: 37347

Theoretical pI: Translated: 8.03; Mature: 8.03

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDTLQNMRVFARVVEAGSFTAAALSLNSTTGATSRAVTELEARLRTRLLNRSTRRLSLTP
CCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEECCC
AGERYLLRCRQILADVGAAEEEASRAHERPSGVLRLHSFASIGQHYVMPALTRYRERHHG
CCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHCC
VSVELTLSQRMPDLFDGSSDMAVVTASSLPDSELVSHCLGETFSILCASPSYLRERGAPS
CEEEEEHHHCCCHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCHHHHHHCCCCC
SPSELVDHDCLMLQTPAFATHDWLLESRTGQVEQIRVRGPVQTNTAESLAIAIRDGIGIG
CHHHHHCCCCEEEECCCCCHHHHHHHCCCCCEEEEEEECCCCCCCHHHEEEEECCCCCCC
MLPLYAAIGLLRDGSLMRVLPAHTLQRMRIYALYPSRRFVDAKVRTWVAFLRADLPDRIA
HHHHHHHHHHHCCCCHHHHHHHHHHHHEEEEEECCCCCCHHHHHHHHHHHHHHCCHHHHH
RDEAMLASLDARMRAALASTRRPGVADAADEVDESGAAAAH
HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCC
>Mature Secondary Structure
MDTLQNMRVFARVVEAGSFTAAALSLNSTTGATSRAVTELEARLRTRLLNRSTRRLSLTP
CCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEECCC
AGERYLLRCRQILADVGAAEEEASRAHERPSGVLRLHSFASIGQHYVMPALTRYRERHHG
CCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHCC
VSVELTLSQRMPDLFDGSSDMAVVTASSLPDSELVSHCLGETFSILCASPSYLRERGAPS
CEEEEEHHHCCCHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCHHHHHHCCCCC
SPSELVDHDCLMLQTPAFATHDWLLESRTGQVEQIRVRGPVQTNTAESLAIAIRDGIGIG
CHHHHHCCCCEEEECCCCCHHHHHHHCCCCCEEEEEEECCCCCCCHHHEEEEECCCCCCC
MLPLYAAIGLLRDGSLMRVLPAHTLQRMRIYALYPSRRFVDAKVRTWVAFLRADLPDRIA
HHHHHHHHHHHCCCCHHHHHHHHHHHHEEEEEECCCCCCHHHHHHHHHHHHHHCCHHHHH
RDEAMLASLDARMRAALASTRRPGVADAADEVDESGAAAAH
HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]