Click here to switch to the map view.

The map label for this gene is yijO [H]

Identifier: 238024613

GI number: 238024613

Start: 1566222

End: 1567175

Strand: Direct

Name: yijO [H]

Synonym: bglu_2g12280

Alternate gene names: 238024613

Gene position: 1566222-1567175 (Clockwise)

Preceding gene: 238024609

Following gene: 339717975

Centisome position: 55.4

GC content: 71.38

Gene sequence:

>954_bases
ATGCCAGCCAATCCGCAGCCGCGCACCTACGCGATGCCCGAGCGCAGCGACCGCCTCGACTTCTACATTCGCGACCAGAC
CAGCCGGCAGCCGATCACCGAGCCGCACCGGCACGCGTATTTCCAGATCCAGTTCAACCTGGGCGGCGACACCGAGCAGC
GCATCGGCGGCGTGACGCGGCCGTTCCCGCGCGGCGCGCTGGCGTTCATCCTGCCGTTTCGCGAGCACCTGATCCCGCAT
CCGCCCGGCGCGCACTTCATCGTCATCAACTTCTCGCAGGCGTTCCTGCGCGCCGATCTCGACGTCGATCCGCTCGACCT
GGACGAGGTGCCCGTGCAGCGCGCGCCGGAACTCGCGCCGTTCCGCTTCCAGGAGCGGCTCGACTACATCCTGACGGGCG
ACGCGTTCGACGACGCGCGCCGCCTCGCCCAGCGCATGCTCGACGCCGACCGCGAGCGCGGCTTCGGCTCGGCCACGCTG
CTGCGCGGCTACCTGCTGCAACTGATCGGCCTGGTCAGCACGCAATACGCGGGCGCGCTCGGCCGGCTCGCGAAGAGCCA
CGGCGCGCAGCAGGCCGGACGGCGCGATGCGCTCGCGCGCGTGATGCGCCACGTCCGCGCGAACCTGACGAGCGGCGAAC
TCACGCTGGCCGGCACCGCCCAGGCGGCGTTCCTGTCGCCGAACTATCTCGCGCACCTGGTCCGCAAGGAGACCGGCAGC
ACCTTCACCGAACTCGTCACCGCGCGCCGCATCGCGCTCGCGCAATCGCTGCTCGCGCACACCACGCGGCGCATCGCCGA
CATCGCACACGAGGTCGGGTTTCGCGACGAAGGCTATTTCTCGCGGCGCTTCCGGGCCTGCGTGGGGATCTCGCCGAAGG
ATTATCGCGAGGCGAACGGCGCGGCCGGCGTGCTGCGCGGCGAAGCCGCGAGCGCGGCCGGCGGCCAGCCGTAG

Upstream 100 bases:

>100_bases
AATAACAAAAACATTTCATGCCATCCTGTGTGATCCGCGCCACCCCTGCCCCAACCGCTGTACCATCCCCGCTCGACCCG
CACCACCCCGCTTCACCGCC

Downstream 100 bases:

>100_bases
GACGGCGGCGCGCAACAGTGGAACGCGACGGAGCTTCGCCGCCAAGCGGGCGGGCAGGCCGCCGCCGATAGCCAGCTAGC
GTAGATTTGTCCAGAATGTC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 317; Mature: 316

Protein sequence:

>317_residues
MPANPQPRTYAMPERSDRLDFYIRDQTSRQPITEPHRHAYFQIQFNLGGDTEQRIGGVTRPFPRGALAFILPFREHLIPH
PPGAHFIVINFSQAFLRADLDVDPLDLDEVPVQRAPELAPFRFQERLDYILTGDAFDDARRLAQRMLDADRERGFGSATL
LRGYLLQLIGLVSTQYAGALGRLAKSHGAQQAGRRDALARVMRHVRANLTSGELTLAGTAQAAFLSPNYLAHLVRKETGS
TFTELVTARRIALAQSLLAHTTRRIADIAHEVGFRDEGYFSRRFRACVGISPKDYREANGAAGVLRGEAASAAGGQP

Sequences:

>Translated_317_residues
MPANPQPRTYAMPERSDRLDFYIRDQTSRQPITEPHRHAYFQIQFNLGGDTEQRIGGVTRPFPRGALAFILPFREHLIPH
PPGAHFIVINFSQAFLRADLDVDPLDLDEVPVQRAPELAPFRFQERLDYILTGDAFDDARRLAQRMLDADRERGFGSATL
LRGYLLQLIGLVSTQYAGALGRLAKSHGAQQAGRRDALARVMRHVRANLTSGELTLAGTAQAAFLSPNYLAHLVRKETGS
TFTELVTARRIALAQSLLAHTTRRIADIAHEVGFRDEGYFSRRFRACVGISPKDYREANGAAGVLRGEAASAAGGQP
>Mature_316_residues
PANPQPRTYAMPERSDRLDFYIRDQTSRQPITEPHRHAYFQIQFNLGGDTEQRIGGVTRPFPRGALAFILPFREHLIPHP
PGAHFIVINFSQAFLRADLDVDPLDLDEVPVQRAPELAPFRFQERLDYILTGDAFDDARRLAQRMLDADRERGFGSATLL
RGYLLQLIGLVSTQYAGALGRLAKSHGAQQAGRRDALARVMRHVRANLTSGELTLAGTAQAAFLSPNYLAHLVRKETGST
FTELVTARRIALAQSLLAHTTRRIADIAHEVGFRDEGYFSRRFRACVGISPKDYREANGAAGVLRGEAASAAGGQP

Specific function: Unknown

COG id: COG4753

COG function: function code T; Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790391, Length=107, Percent_Identity=36.4485981308411, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI1786251, Length=95, Percent_Identity=35.7894736842105, Blast_Score=69, Evalue=4e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 35170; Mature: 35039

Theoretical pI: Translated: 9.93; Mature: 9.93

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPANPQPRTYAMPERSDRLDFYIRDQTSRQPITEPHRHAYFQIQFNLGGDTEQRIGGVTR
CCCCCCCCEECCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEEEECCCCHHHHHCCCCC
PFPRGALAFILPFREHLIPHPPGAHFIVINFSQAFLRADLDVDPLDLDEVPVQRAPELAP
CCCCCHHHHHHHHHHHCCCCCCCCEEEEEECHHHHHHCCCCCCCCCCCCCCHHCCCCCCC
FRFQERLDYILTGDAFDDARRLAQRMLDADRERGFGSATLLRGYLLQLIGLVSTQYAGAL
HHHHHHCCEEEECCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
GRLAKSHGAQQAGRRDALARVMRHVRANLTSGELTLAGTAQAAFLSPNYLAHLVRKETGS
HHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHCCHHHHHHHHHHHCCC
TFTELVTARRIALAQSLLAHTTRRIADIAHEVGFRDEGYFSRRFRACVGISPKDYREANG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHCCC
AAGVLRGEAASAAGGQP
CCEEEECCCCCCCCCCC
>Mature Secondary Structure 
PANPQPRTYAMPERSDRLDFYIRDQTSRQPITEPHRHAYFQIQFNLGGDTEQRIGGVTR
CCCCCCCEECCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEEEECCCCHHHHHCCCCC
PFPRGALAFILPFREHLIPHPPGAHFIVINFSQAFLRADLDVDPLDLDEVPVQRAPELAP
CCCCCHHHHHHHHHHHCCCCCCCCEEEEEECHHHHHHCCCCCCCCCCCCCCHHCCCCCCC
FRFQERLDYILTGDAFDDARRLAQRMLDADRERGFGSATLLRGYLLQLIGLVSTQYAGAL
HHHHHHCCEEEECCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
GRLAKSHGAQQAGRRDALARVMRHVRANLTSGELTLAGTAQAAFLSPNYLAHLVRKETGS
HHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHCCHHHHHHHHHHHCCC
TFTELVTARRIALAQSLLAHTTRRIADIAHEVGFRDEGYFSRRFRACVGISPKDYREANG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHCCC
AAGVLRGEAASAAGGQP
CCEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8265357; 9278503 [H]