Definition | Burkholderia glumae BGR1 chromosome chromosome 2, complete sequence. |
---|---|
Accession | NC_012721 |
Length | 2,827,333 |
Click here to switch to the map view.
The map label for this gene is 238024598
Identifier: 238024598
GI number: 238024598
Start: 1546794
End: 1548089
Strand: Reverse
Name: 238024598
Synonym: bglu_2g12100
Alternate gene names: NA
Gene position: 1548089-1546794 (Counterclockwise)
Preceding gene: 238024599
Following gene: 238024597
Centisome position: 54.75
GC content: 55.79
Gene sequence:
>1296_bases ATGAAATCATTGACCCCGTGGCGACTGATCGTGATGTACGTTTGCGCTGACGCGGCCGTCACCGTTTCGTCACGAATCTT ACAATTCTACGCCACTTGGCTTTTGCTAAAGGGAATCGCGAATCCATCGGCTTTGGCGCTCACGCTGACTGCAACGTGGG TGACGACGTTGCTAACCCTTCCGTTCGCCGGCATCATTTCCGAGCGTATCCCCAAGAGTTCGGTGTTGCTGGGGGCCTCG CTGATTGTTCTTGGGTCGGTGATACCCGTCGCCGTGGTCGCATTTGCACATTATCGCACCACCACGGATTGGCTTATCGT AGTCATCGTCTTGGCAAGTGTGACTTCCAGCGTCGCCATGGCGGCCCTTATGCCGCTGAGCACGCCGCTCATACCGGAGA TCTCACCTGACGCGGACGAGATTCGCAAAGGTCTGCGTTTGAAGGCGTCGGGTTTCATCCTGAATATCCTGTTCGGCCCG ACCTTGGCGGGTTTCATGATCGGCGCGTTCGGCGGTGAGTCGGCGCTATGGGCCAGTGTCGTCAGCAGCTGTCTCGGCGT CATAGCGTCACTTGCCTTTCACGCGTCGTTCGGCAGGCGGCAAGCGGTGCATGCAGGTGCCGATGACGCTCCACCTTTTT TCCAAGAGCTCCGCCGCGGGATGCTGCGGGTGCTTGGTATTCGAGCCGAGCGCGCGATCGCGGCTGCGTCGCTGCTTGCG AACATGCTGTTCGTTCCATTCGTTTTCTTTTTATTGCCGGCCAAGGTGCTCGCAGAAGGGGGCACTATGCTGAACGTCGC CGCCATCGAGCTTTCATTGGGCGCAGGGGTATTGGTGGCCGCCATGCTGCTAATCCAGCAAGCGAGGCGCATCGCTTCTG ATCACGCGATTTCGGTATTCGGTATCTTTTTGATCGGTGGTTCTATATTTGTATTTGGTTGCATCCATAATTTACCTGTT TGCTGTATGCTCGGGTTCACATTGGGCATTGGATTGACGATGTTCAATGTCACCGTTAATTCGAAGCGGGCAATGGCAAT CCCGGCAGGGCATCGCGCCTGTATGGAGTCGAGTCTGATGTTTTTATGTACCGCTGCCGCTCCGCTGGGTATCTGGATGT CAGGCGTGGCGCTAAAGACGTTATCGCCAAATTCAGTCATCGTTTACGGAAGCGAGCTTTTCTTGCTCGCGCTCTTCTGC ATAGCGTTCTCGCGGCCGTTGAGGTTGATGCTCAATTCCGAAGATGGTGGCTCGCCCCATTATCTCAGGACCAACCGAGA ATTGTTCGATCGCTAA
Upstream 100 bases:
>100_bases TATTCATCCAAGTACAAGTTTTTGCCGGGAACGCAAGGGCGTTCAATGCAGCAGCTATTTTCAAGTCTGTCACTGACGAG TTGCCCGATAGCGAATAGCG
Downstream 100 bases:
>100_bases TAGTCCTCATGAGCTATCCATTTCTTCCAGTACTGAGCGTTGCTTCGTCGCTCTCAAAAGGGTTCAAGTCCCAGCTGAAG TCTGCATATGACGATTTGCT
Product: major facilitator superfamily
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 431; Mature: 431
Protein sequence:
>431_residues MKSLTPWRLIVMYVCADAAVTVSSRILQFYATWLLLKGIANPSALALTLTATWVTTLLTLPFAGIISERIPKSSVLLGAS LIVLGSVIPVAVVAFAHYRTTTDWLIVVIVLASVTSSVAMAALMPLSTPLIPEISPDADEIRKGLRLKASGFILNILFGP TLAGFMIGAFGGESALWASVVSSCLGVIASLAFHASFGRRQAVHAGADDAPPFFQELRRGMLRVLGIRAERAIAAASLLA NMLFVPFVFFLLPAKVLAEGGTMLNVAAIELSLGAGVLVAAMLLIQQARRIASDHAISVFGIFLIGGSIFVFGCIHNLPV CCMLGFTLGIGLTMFNVTVNSKRAMAIPAGHRACMESSLMFLCTAAAPLGIWMSGVALKTLSPNSVIVYGSELFLLALFC IAFSRPLRLMLNSEDGGSPHYLRTNRELFDR
Sequences:
>Translated_431_residues MKSLTPWRLIVMYVCADAAVTVSSRILQFYATWLLLKGIANPSALALTLTATWVTTLLTLPFAGIISERIPKSSVLLGAS LIVLGSVIPVAVVAFAHYRTTTDWLIVVIVLASVTSSVAMAALMPLSTPLIPEISPDADEIRKGLRLKASGFILNILFGP TLAGFMIGAFGGESALWASVVSSCLGVIASLAFHASFGRRQAVHAGADDAPPFFQELRRGMLRVLGIRAERAIAAASLLA NMLFVPFVFFLLPAKVLAEGGTMLNVAAIELSLGAGVLVAAMLLIQQARRIASDHAISVFGIFLIGGSIFVFGCIHNLPV CCMLGFTLGIGLTMFNVTVNSKRAMAIPAGHRACMESSLMFLCTAAAPLGIWMSGVALKTLSPNSVIVYGSELFLLALFC IAFSRPLRLMLNSEDGGSPHYLRTNRELFDR >Mature_431_residues MKSLTPWRLIVMYVCADAAVTVSSRILQFYATWLLLKGIANPSALALTLTATWVTTLLTLPFAGIISERIPKSSVLLGAS LIVLGSVIPVAVVAFAHYRTTTDWLIVVIVLASVTSSVAMAALMPLSTPLIPEISPDADEIRKGLRLKASGFILNILFGP TLAGFMIGAFGGESALWASVVSSCLGVIASLAFHASFGRRQAVHAGADDAPPFFQELRRGMLRVLGIRAERAIAAASLLA NMLFVPFVFFLLPAKVLAEGGTMLNVAAIELSLGAGVLVAAMLLIQQARRIASDHAISVFGIFLIGGSIFVFGCIHNLPV CCMLGFTLGIGLTMFNVTVNSKRAMAIPAGHRACMESSLMFLCTAAAPLGIWMSGVALKTLSPNSVIVYGSELFLLALFC IAFSRPLRLMLNSEDGGSPHYLRTNRELFDR
Specific function: Unknown
COG id: COG0477
COG function: function code GEPR; Permeases of the major facilitator superfamily
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 45875; Mature: 45875
Theoretical pI: Translated: 9.37; Mature: 9.37
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 5.6 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 5.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKSLTPWRLIVMYVCADAAVTVSSRILQFYATWLLLKGIANPSALALTLTATWVTTLLTL CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHH PFAGIISERIPKSSVLLGASLIVLGSVIPVAVVAFAHYRTTTDWLIVVIVLASVTSSVAM HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH AALMPLSTPLIPEISPDADEIRKGLRLKASGFILNILFGPTLAGFMIGAFGGESALWASV HHHHHCCCCCCCCCCCCHHHHHHCCEEEECCEEEEHHHHHHHHHHHHHCCCCCHHHHHHH VSSCLGVIASLAFHASFGRRQAVHAGADDAPPFFQELRRGMLRVLGIRAERAIAAASLLA HHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH NMLFVPFVFFLLPAKVLAEGGTMLNVAAIELSLGAGVLVAAMLLIQQARRIASDHAISVF HHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCHHHHHHHHHHHHHHHHHCCCHHHHH GIFLIGGSIFVFGCIHNLPVCCMLGFTLGIGLTMFNVTVNSKRAMAIPAGHRACMESSLM HHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCEEEEEEECCCCEEECCCCHHHHHHHHHH FLCTAAAPLGIWMSGVALKTLSPNSVIVYGSELFLLALFCIAFSRPLRLMLNSEDGGSPH HHHHHHHHHHHHHCCEEEEEECCCEEEEECHHHHHHHHHHHHHCCCCEEEEECCCCCCCC YLRTNRELFDR EEECCHHHHCC >Mature Secondary Structure MKSLTPWRLIVMYVCADAAVTVSSRILQFYATWLLLKGIANPSALALTLTATWVTTLLTL CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHH PFAGIISERIPKSSVLLGASLIVLGSVIPVAVVAFAHYRTTTDWLIVVIVLASVTSSVAM HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH AALMPLSTPLIPEISPDADEIRKGLRLKASGFILNILFGPTLAGFMIGAFGGESALWASV HHHHHCCCCCCCCCCCCHHHHHHCCEEEECCEEEEHHHHHHHHHHHHHCCCCCHHHHHHH VSSCLGVIASLAFHASFGRRQAVHAGADDAPPFFQELRRGMLRVLGIRAERAIAAASLLA HHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH NMLFVPFVFFLLPAKVLAEGGTMLNVAAIELSLGAGVLVAAMLLIQQARRIASDHAISVF HHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCHHHHHHHHHHHHHHHHHCCCHHHHH GIFLIGGSIFVFGCIHNLPVCCMLGFTLGIGLTMFNVTVNSKRAMAIPAGHRACMESSLM HHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCEEEEEEECCCCEEECCCCHHHHHHHHHH FLCTAAAPLGIWMSGVALKTLSPNSVIVYGSELFLLALFCIAFSRPLRLMLNSEDGGSPH HHHHHHHHHHHHHCCEEEEEECCCEEEEECHHHHHHHHHHHHHCCCCEEEEECCCCCCCC YLRTNRELFDR EEECCHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA