Definition | Burkholderia glumae BGR1 chromosome chromosome 2, complete sequence. |
---|---|
Accession | NC_012721 |
Length | 2,827,333 |
Click here to switch to the map view.
The map label for this gene is pcaG [H]
Identifier: 238024596
GI number: 238024596
Start: 1544750
End: 1545340
Strand: Direct
Name: pcaG [H]
Synonym: bglu_2g12070
Alternate gene names: 238024596
Gene position: 1544750-1545340 (Clockwise)
Preceding gene: 238024595
Following gene: 238024601
Centisome position: 54.64
GC content: 69.37
Gene sequence:
>591_bases ATGACGACCCTGAAACAGACCCCTTCGCAGACCGTCGGCCCGTACTTCGCCTACGGGCTGTGTCCGCAGCAGTACAACTT CGACATGAAGAGCCTGTTCTCGCCGGAGATCGCTGCGCCGCACACGCCGGGCCAGCCGATCCTGCTGATCGGCCAGGTGT TCGACGGCGACGGGCAGCCGATCCTCGACGCGGTGCTCGAGTTCACGCAGGTGGACGCGGCCGGGCGGTTTCCCGCCTCG CGCGCGCAGATCGCCGAAAGCGGCTTCACGGGCTTCGCCCGCGTCGGGACCGGCACGGACCCGCAGCACCGCTTCATCGT GCGCACGGTGAAGCCGGCCGCCACCGACGCGGGCGCGCCGCACGTGGACGTGACGGTGATGATGCGCGGCGTGCTCACCC ATGCGTTCACGCGGCTCTACTTCGAGGACGAGACCGAGGCGAACGCGGCCGATGCGGTGCTGGCAAGCGTGCCGGCGGCG CGGCGCGGGACCTTGATGGCGCGGCGCGAGGCGGGCGAGAACGGCGTGGTGGTGTATCGCTTCGACATCCGCATGCAGGG CGATCGGGAGACGGTGTTCTTCGATCTGTGA
Upstream 100 bases:
>100_bases CGCGCTTTTCGCTCGAGGTGACCGAGGAGAGCTACGCGCTCGGCTACGAATTCGATATCGTGCTGCGCGGCCGCGACGCC ACCCCGATGGAGCGCTGATC
Downstream 100 bases:
>100_bases GCGAGCGCCGGGCGCGCCCCGCCGGTGCGCGTGCCGCCGACGAAAACGGCCGGAAGGCTCTCCGGCCGTTTTTGATGGGC CTCGCGCGATCGCAGGCGGC
Product: protocatechuate 3,4-dioxygenase subunit alpha
Products: NA
Alternate protein names: 3,4-PCD [H]
Number of amino acids: Translated: 196; Mature: 195
Protein sequence:
>196_residues MTTLKQTPSQTVGPYFAYGLCPQQYNFDMKSLFSPEIAAPHTPGQPILLIGQVFDGDGQPILDAVLEFTQVDAAGRFPAS RAQIAESGFTGFARVGTGTDPQHRFIVRTVKPAATDAGAPHVDVTVMMRGVLTHAFTRLYFEDETEANAADAVLASVPAA RRGTLMARREAGENGVVVYRFDIRMQGDRETVFFDL
Sequences:
>Translated_196_residues MTTLKQTPSQTVGPYFAYGLCPQQYNFDMKSLFSPEIAAPHTPGQPILLIGQVFDGDGQPILDAVLEFTQVDAAGRFPAS RAQIAESGFTGFARVGTGTDPQHRFIVRTVKPAATDAGAPHVDVTVMMRGVLTHAFTRLYFEDETEANAADAVLASVPAA RRGTLMARREAGENGVVVYRFDIRMQGDRETVFFDL >Mature_195_residues TTLKQTPSQTVGPYFAYGLCPQQYNFDMKSLFSPEIAAPHTPGQPILLIGQVFDGDGQPILDAVLEFTQVDAAGRFPASR AQIAESGFTGFARVGTGTDPQHRFIVRTVKPAATDAGAPHVDVTVMMRGVLTHAFTRLYFEDETEANAADAVLASVPAAR RGTLMARREAGENGVVVYRFDIRMQGDRETVFFDL
Specific function: Plays an essential role in the utilization of numerous aromatic and hydroaromatic compounds via the beta-ketoadipate pathway [H]
COG id: COG3485
COG function: function code Q; Protocatechuate 3,4-dioxygenase beta subunit
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the intradiol ring-cleavage dioxygenase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000627 - InterPro: IPR015889 - InterPro: IPR012786 [H]
Pfam domain/function: PF00775 Dioxygenase_C [H]
EC number: =1.13.11.3 [H]
Molecular weight: Translated: 21329; Mature: 21198
Theoretical pI: Translated: 5.24; Mature: 5.24
Prosite motif: PS00083 INTRADIOL_DIOXYGENAS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTLKQTPSQTVGPYFAYGLCPQQYNFDMKSLFSPEIAAPHTPGQPILLIGQVFDGDGQP CCCCCCCCCCCCCCCEEECCCCHHCCCCHHHHCCCCCCCCCCCCCCEEEEEEEECCCCCH ILDAVLEFTQVDAAGRFPASRAQIAESGFTGFARVGTGTDPQHRFIVRTVKPAATDAGAP HHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCEEECCCCCCCCCEEEEEEECCCCCCCCCC HVDVTVMMRGVLTHAFTRLYFEDETEANAADAVLASVPAARRGTLMARREAGENGVVVYR CCHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHCCCCCCCCEEEHHCCCCCCEEEEE FDIRMQGDRETVFFDL EEEEECCCCCEEEEEC >Mature Secondary Structure TTLKQTPSQTVGPYFAYGLCPQQYNFDMKSLFSPEIAAPHTPGQPILLIGQVFDGDGQP CCCCCCCCCCCCCCEEECCCCHHCCCCHHHHCCCCCCCCCCCCCCEEEEEEEECCCCCH ILDAVLEFTQVDAAGRFPASRAQIAESGFTGFARVGTGTDPQHRFIVRTVKPAATDAGAP HHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCEEECCCCCCCCCEEEEEEECCCCCCCCCC HVDVTVMMRGVLTHAFTRLYFEDETEANAADAVLASVPAARRGTLMARREAGENGVVVYR CCHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHCCCCCCCCEEEHHCCCCCCEEEEE FDIRMQGDRETVFFDL EEEEECCCCCEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2808303 [H]