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The map label for this gene is nifU [H]

Identifier: 23501952

GI number: 23501952

Start: 1044930

End: 1045370

Strand: Reverse

Name: nifU [H]

Synonym: BR1074

Alternate gene names: 23501952

Gene position: 1045370-1044930 (Counterclockwise)

Preceding gene: 23501958

Following gene: 23501951

Centisome position: 49.6

GC content: 57.37

Gene sequence:

>441_bases
ATGATCGACGATATCTACAATAAACGCATCCTGGAGTTTGCGGGCAATATGGAACGCATCGGGCAGCTTGCCGAGCCGGA
TGCCGTTGCCACGGTGCATTCAAAACTATGCGGCTCCACGGTTACCGTTTATCTGAAGATGAGGGATGGTGTGGTGACAG
ATTTCGCCCACGAGGTGAAGGCATGTGCGCTGGGGCAGGCGTCTTCCTCCGTCATGGCGCGCAATGTGATTGGCGCCACC
GCCGACGAATTGAGGGCGGCCCGCGATGCCATGTACAGGATGCTGAAGGAAAACGGCCCGGCACCGGAAGGGCGCTTTGC
GGATATGAAATATTTTGAGCCGGTGCGCGACTACAAGGCCCGCCACGCTTCCACGCTTCTTACCTTCGATGCTGTCGCTG
ATTGCATTCGCCAGATCGAGGAAAAGGCGAAAGCCGCCTGA

Upstream 100 bases:

>100_bases
GACCTGACTTCCCTATTATATAAACATTTATTTACAACTTCAAACCGCAGCCGGGCGACAAAATTCTGTTTTTGTCCGGC
ATGGCGGAAGGTTCGCCTAC

Downstream 100 bases:

>100_bases
CATGGGGTCTTGCGGCGGGAAACATACGGGCAAGGGCGCGCCTAAACCTTACAGCCGCAACTTCACCGATCCATGGCGCA
AGACGCCGGGACGCCTGTTC

Product: NifU-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 146; Mature: 146

Protein sequence:

>146_residues
MIDDIYNKRILEFAGNMERIGQLAEPDAVATVHSKLCGSTVTVYLKMRDGVVTDFAHEVKACALGQASSSVMARNVIGAT
ADELRAARDAMYRMLKENGPAPEGRFADMKYFEPVRDYKARHASTLLTFDAVADCIRQIEEKAKAA

Sequences:

>Translated_146_residues
MIDDIYNKRILEFAGNMERIGQLAEPDAVATVHSKLCGSTVTVYLKMRDGVVTDFAHEVKACALGQASSSVMARNVIGAT
ADELRAARDAMYRMLKENGPAPEGRFADMKYFEPVRDYKARHASTLLTFDAVADCIRQIEEKAKAA
>Mature_146_residues
MIDDIYNKRILEFAGNMERIGQLAEPDAVATVHSKLCGSTVTVYLKMRDGVVTDFAHEVKACALGQASSSVMARNVIGAT
ADELRAARDAMYRMLKENGPAPEGRFADMKYFEPVRDYKARHASTLLTFDAVADCIRQIEEKAKAA

Specific function: May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins (Potential) [H]

COG id: COG0822

COG function: function code C; NifU homolog involved in Fe-S cluster formation

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nifU family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002871
- InterPro:   IPR011341 [H]

Pfam domain/function: PF01592 NifU_N [H]

EC number: NA

Molecular weight: Translated: 16090; Mature: 16090

Theoretical pI: Translated: 6.78; Mature: 6.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
6.8 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
6.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDDIYNKRILEFAGNMERIGQLAEPDAVATVHSKLCGSTVTVYLKMRDGVVTDFAHEVK
CCCHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHCCEEEEEEEECCCHHHHHHHHHH
ACALGQASSSVMARNVIGATADELRAARDAMYRMLKENGPAPEGRFADMKYFEPVRDYKA
HHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
RHASTLLTFDAVADCIRQIEEKAKAA
HHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MIDDIYNKRILEFAGNMERIGQLAEPDAVATVHSKLCGSTVTVYLKMRDGVVTDFAHEVK
CCCHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHCCEEEEEEEECCCHHHHHHHHHH
ACALGQASSSVMARNVIGATADELRAARDAMYRMLKENGPAPEGRFADMKYFEPVRDYKA
HHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
RHASTLLTFDAVADCIRQIEEKAKAA
HHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10360571 [H]