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The map label for this gene is yfjD [H]

Identifier: 23100893

GI number: 23100893

Start: 3574336

End: 3575556

Strand: Reverse

Name: yfjD [H]

Synonym: OB3438

Alternate gene names: 23100893

Gene position: 3575556-3574336 (Counterclockwise)

Preceding gene: 23100894

Following gene: 23100889

Centisome position: 98.49

GC content: 35.22

Gene sequence:

>1221_bases
GTGATCATTGCGATCATATTTTTATTATTTGTCTCTGCTTTCTTCTCAGGAAGTGAAACCGCATTAACGGCGACAAATAA
AATGAAATTACAATCAAAAGCGAATAATGGTGATAAAAAAGCGGAAAAAATGCTGAATTTAGTATCGAAGCCGAGTGAGT
TTATCACGGCTATTTTAATAGGAAATAACATTGCTAACATTGTGTTACCAACATTGGTAACGATGATGGCCGTGCAGTAT
GGTTTTAATGTAGGATTGGCTTCGGCTATTTTGACGATAACCATCATCATATGCTCTGAAGTTATTCCAAAGTCAATTGC
GGCAAGTTTTCCGAATCAAATGGCAAGTATTGTATATCCAATTATTCGATTAGTAGTGACAGTTTTAAAACCAATCACCT
TTTTATTAAATAGACTGACAGGTTTTATCACGAACCTACTTTCTAAAGGACAAGTAGAGACTGAGTCTGTATCGAAAGAA
GAGCTTCGAGCGATTGTCGATATTGCTGATTCAGAAGGAACATTTCGTAAAGAAGAAAGTTCACGTATTCGTGGAGCACT
GGATTTTTACAACTTAAATGTTAAAGACGTATTAAAAACACCAAGAGTAGAGATTGTTGCATTAGAAAATACGGCTACAT
ACGATGAGGTAAAAGAACTGGTACTAGCAAATCCCTTTACGAGATACCCCGTCTATGATGAAGATATTGATGATATTATC
GGTGTGTTCCATTCCAAATATTTAATTGCTTGGACCGATGATAAGGGACAGCCTTTCTCAAACTTTAGCGATACCGATCC
GCTTTATATATATGAATTTAATAATATTGAATGGGTATTCCGTAAAATGACACAAGAAAAGAAGCATATGGCAATTGTGT
TAGATGAATATGGTGGTACGGAAGGTATTGTTACGCATGAAGATATTATTGAAACGATGATTGGTTTAGAAATAGAAGAT
GAGATGGATGAAAAAGAAGATGCATTAATTGAGAAACTAACCGATACGCAAATTATATGTGATGGAAAAATCACACTGCA
TCAACTGAATAATGCGTTTGATACAGACATTCCGGAGGATGAAGATGTACTAGCTGCGTATTTATTAACGCACTTTACAG
AGTTTCCAAAAGAAGGAGATGTGTTAGAGAGAGAAAATCTAACCTTCCACATCTTAGAAGTTGATTCTAGATATATCAGT
CGCGTACAGATTATTAAATAG

Upstream 100 bases:

>100_bases
TAAAAAAAGGTACTATATGAATTCATTATAATAGCATATATGTATACATCTCCGTTATGATAGTATTAACATTCAAAATG
GAATTGGGAGGAATTAACTC

Downstream 100 bases:

>100_bases
ATATGTAGAGAATAGTAACTATCACAGTTGCTATTCTTTTTTTTATAGTATTGTTAATTGGGTTCTTCATTTTAAGGTTC
TTGAAAGCCATAAATGGCGA

Product: hemolysin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 406; Mature: 406

Protein sequence:

>406_residues
MIIAIIFLLFVSAFFSGSETALTATNKMKLQSKANNGDKKAEKMLNLVSKPSEFITAILIGNNIANIVLPTLVTMMAVQY
GFNVGLASAILTITIIICSEVIPKSIAASFPNQMASIVYPIIRLVVTVLKPITFLLNRLTGFITNLLSKGQVETESVSKE
ELRAIVDIADSEGTFRKEESSRIRGALDFYNLNVKDVLKTPRVEIVALENTATYDEVKELVLANPFTRYPVYDEDIDDII
GVFHSKYLIAWTDDKGQPFSNFSDTDPLYIYEFNNIEWVFRKMTQEKKHMAIVLDEYGGTEGIVTHEDIIETMIGLEIED
EMDEKEDALIEKLTDTQIICDGKITLHQLNNAFDTDIPEDEDVLAAYLLTHFTEFPKEGDVLERENLTFHILEVDSRYIS
RVQIIK

Sequences:

>Translated_406_residues
MIIAIIFLLFVSAFFSGSETALTATNKMKLQSKANNGDKKAEKMLNLVSKPSEFITAILIGNNIANIVLPTLVTMMAVQY
GFNVGLASAILTITIIICSEVIPKSIAASFPNQMASIVYPIIRLVVTVLKPITFLLNRLTGFITNLLSKGQVETESVSKE
ELRAIVDIADSEGTFRKEESSRIRGALDFYNLNVKDVLKTPRVEIVALENTATYDEVKELVLANPFTRYPVYDEDIDDII
GVFHSKYLIAWTDDKGQPFSNFSDTDPLYIYEFNNIEWVFRKMTQEKKHMAIVLDEYGGTEGIVTHEDIIETMIGLEIED
EMDEKEDALIEKLTDTQIICDGKITLHQLNNAFDTDIPEDEDVLAAYLLTHFTEFPKEGDVLERENLTFHILEVDSRYIS
RVQIIK
>Mature_406_residues
MIIAIIFLLFVSAFFSGSETALTATNKMKLQSKANNGDKKAEKMLNLVSKPSEFITAILIGNNIANIVLPTLVTMMAVQY
GFNVGLASAILTITIIICSEVIPKSIAASFPNQMASIVYPIIRLVVTVLKPITFLLNRLTGFITNLLSKGQVETESVSKE
ELRAIVDIADSEGTFRKEESSRIRGALDFYNLNVKDVLKTPRVEIVALENTATYDEVKELVLANPFTRYPVYDEDIDDII
GVFHSKYLIAWTDDKGQPFSNFSDTDPLYIYEFNNIEWVFRKMTQEKKHMAIVLDEYGGTEGIVTHEDIIETMIGLEIED
EMDEKEDALIEKLTDTQIICDGKITLHQLNNAFDTDIPEDEDVLAAYLLTHFTEFPKEGDVLERENLTFHILEVDSRYIS
RVQIIK

Specific function: Unknown

COG id: COG4536

COG function: function code P; Putative Mg2+ and Co2+ transporter CorB

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 CBS domains [H]

Homologues:

Organism=Homo sapiens, GI310128564, Length=391, Percent_Identity=26.8542199488491, Blast_Score=129, Evalue=4e-30,
Organism=Homo sapiens, GI40068055, Length=339, Percent_Identity=24.7787610619469, Blast_Score=83, Evalue=4e-16,
Organism=Homo sapiens, GI40068053, Length=339, Percent_Identity=24.7787610619469, Blast_Score=83, Evalue=5e-16,
Organism=Homo sapiens, GI94681046, Length=332, Percent_Identity=23.7951807228916, Blast_Score=80, Evalue=3e-15,
Organism=Escherichia coli, GI145693175, Length=412, Percent_Identity=28.8834951456311, Blast_Score=165, Evalue=5e-42,
Organism=Escherichia coli, GI1790664, Length=426, Percent_Identity=22.5352112676056, Blast_Score=114, Evalue=1e-26,
Organism=Escherichia coli, GI1786879, Length=266, Percent_Identity=25.9398496240602, Blast_Score=98, Evalue=1e-21,
Organism=Escherichia coli, GI87082033, Length=280, Percent_Identity=28.5714285714286, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI1788119, Length=239, Percent_Identity=26.3598326359833, Blast_Score=80, Evalue=3e-16,
Organism=Saccharomyces cerevisiae, GI6324512, Length=334, Percent_Identity=25.4491017964072, Blast_Score=89, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016169
- InterPro:   IPR000644
- InterPro:   IPR002550
- InterPro:   IPR005170 [H]

Pfam domain/function: PF00571 CBS; PF03471 CorC_HlyC; PF01595 DUF21 [H]

EC number: NA

Molecular weight: Translated: 45788; Mature: 45788

Theoretical pI: Translated: 4.35; Mature: 4.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIIAIIFLLFVSAFFSGSETALTATNKMKLQSKANNGDKKAEKMLNLVSKPSEFITAILI
CHHHHHHHHHHHHHHCCCCCEEEECCHHEEHHCCCCCHHHHHHHHHHHHCCHHHEEEEEE
GNNIANIVLPTLVTMMAVQYGFNVGLASAILTITIIICSEVIPKSIAASFPNQMASIVYP
CCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
IIRLVVTVLKPITFLLNRLTGFITNLLSKGQVETESVSKEELRAIVDIADSEGTFRKEES
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHCCCCCCCCCCHH
SRIRGALDFYNLNVKDVLKTPRVEIVALENTATYDEVKELVLANPFTRYPVYDEDIDDII
HHHHHHHHHCCCCHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHH
GVFHSKYLIAWTDDKGQPFSNFSDTDPLYIYEFNNIEWVFRKMTQEKKHMAIVLDEYGGT
HHHHCCEEEEEECCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHCCCEEEEEECCCCC
EGIVTHEDIIETMIGLEIEDEMDEKEDALIEKLTDTQIICDGKITLHQLNNAFDTDIPED
CCCEEHHHHHHHHHCCCCHHHCCHHHHHHHHHHCCCEEEECCCEEEEHHCCCCCCCCCCC
EDVLAAYLLTHFTEFPKEGDVLERENLTFHILEVDSRYISRVQIIK
HHHHHHHHHHHHHHCCCCCCCEECCCCEEEEEECCHHHHHHHEECC
>Mature Secondary Structure
MIIAIIFLLFVSAFFSGSETALTATNKMKLQSKANNGDKKAEKMLNLVSKPSEFITAILI
CHHHHHHHHHHHHHHCCCCCEEEECCHHEEHHCCCCCHHHHHHHHHHHHCCHHHEEEEEE
GNNIANIVLPTLVTMMAVQYGFNVGLASAILTITIIICSEVIPKSIAASFPNQMASIVYP
CCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
IIRLVVTVLKPITFLLNRLTGFITNLLSKGQVETESVSKEELRAIVDIADSEGTFRKEES
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHCCCCCCCCCCHH
SRIRGALDFYNLNVKDVLKTPRVEIVALENTATYDEVKELVLANPFTRYPVYDEDIDDII
HHHHHHHHHCCCCHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHH
GVFHSKYLIAWTDDKGQPFSNFSDTDPLYIYEFNNIEWVFRKMTQEKKHMAIVLDEYGGT
HHHHCCEEEEEECCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHCCCEEEEEECCCCC
EGIVTHEDIIETMIGLEIEDEMDEKEDALIEKLTDTQIICDGKITLHQLNNAFDTDIPED
CCCEEHHHHHHHHHCCCCHHHCCHHHHHHHHHHCCCEEEECCCEEEEHHCCCCCCCCCCC
EDVLAAYLLTHFTEFPKEGDVLERENLTFHILEVDSRYISRVQIIK
HHHHHHHHHHHHHHCCCCCCCEECCCCEEEEEECCHHHHHHHEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 3045760 [H]