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The map label for this gene is yfdE [H]

Identifier: 23100686

GI number: 23100686

Start: 3366470

End: 3367678

Strand: Reverse

Name: yfdE [H]

Synonym: OB3231

Alternate gene names: 23100686

Gene position: 3367678-3366470 (Counterclockwise)

Preceding gene: 23100687

Following gene: 23100685

Centisome position: 92.76

GC content: 38.63

Gene sequence:

>1209_bases
ATGAACAACAACAATTATGGTCCCTTAACAGGATTGAAAATCCTAGACATATCTACGATGATAGCCGCGCCATTTGGAGC
AACTTTACTAGCAGACTTAGGAGGAGATGTGACGAAGATTGAATTACCAGGAAAAGGTGATACGCTTCGTACTGTAGGCC
CATGGAAAGATGGGGAAGCCTTAAGGTGGCCAGGATTAGCCCGCAATAAAAAATCACTTACTTTAGATATTCGTAAAGAA
GCAGGAAAAAATATTTTCAAAAAGTTAATTGCACAAACGGATGTACTTATTGAGAATTTTAGACCTGGAACATTGGAAAA
ATGGGGACTAAGCTATGAAGAATTAAAAGAAGAGAATCCACAGCTAATTATGGTTCGTTTATCTGGATACGGACAAACGG
GTCCATATAGTAAAAAAGCTGGTTTTGGTACTCCTGCAACGGCATTTAGTGGTCATACTGCAATACAGGGGTATATTGAT
CGACCGCCTGTAAGTCCATCTTATTCTTTATTGGATTATATAACTGGAGTATATGTCGCTTTTGCTACAGTGAGTGCATT
ATACCATCGTGATGTCCATGAGGAAAAAGAAGGTCAAGTCGTAGAGATGGGACTCTATGAATCTATTTTCAGGATGTTAG
AGTTTTTAATAGCAGAATACGATCAAAACAAAAAGGTCAGAGATCGAAGTCCAGGATTATCTGGTCATTCTAGCCCTGCA
GGTACGTATGCAACGAAGGATGGAAAATTTGTTGTACTCGTATGTAGTACCGATTCTACTTTTGATCGACTAGCCGATGC
GATGAATCGAAAAGATATGCTCGAAGATGATAGATATTATACGAATTCTGAGAGACTAAAAAATGATAGTGAGGTACAAG
AGATTGTGTCCAACTGGATTAAAAAGCATAACTTGAAAGAGTTAACGGAGATTTTGGATAACTATGGTGTACCTATTAGT
CCAATCTATACAATAGAGGACATCTTCAATGATCCTCACTATCAAGCTAGAGATAATATTGTTGAGGTGGAGCATCCACG
ATTAGGAAAAGTTAAAGTTCCAGGTGTGGTACCAAACTTCTCAAAAACCCCAGGTAAAATAAGACATCGTGCGCCAGAAT
TAGGGGAACATAATGAAGAGATTCTTGGAAATCACCTAGGTCTTTCAGAAGCAGAAATTAGTACACTAAAGGAACAGGGG
GTAATCTAG

Upstream 100 bases:

>100_bases
CGTTTTAATCCTTTACCATCGTATCGAGAGGGTATATGCAGCATAAAGAAAGGTTAATCAAACAAGCGTTTTTTAGATCG
ATCTAAAGGAGAGAGTCAAG

Downstream 100 bases:

>100_bases
TTTATGGCAGATCAAGCGTTTTTACTTCCTACAAAAGCTATAATTTGTGAAGTTGCACCTAGAGATGGTTTTCAAGCAGA
GCCAGAGTGGATTCCAACAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 402; Mature: 402

Protein sequence:

>402_residues
MNNNNYGPLTGLKILDISTMIAAPFGATLLADLGGDVTKIELPGKGDTLRTVGPWKDGEALRWPGLARNKKSLTLDIRKE
AGKNIFKKLIAQTDVLIENFRPGTLEKWGLSYEELKEENPQLIMVRLSGYGQTGPYSKKAGFGTPATAFSGHTAIQGYID
RPPVSPSYSLLDYITGVYVAFATVSALYHRDVHEEKEGQVVEMGLYESIFRMLEFLIAEYDQNKKVRDRSPGLSGHSSPA
GTYATKDGKFVVLVCSTDSTFDRLADAMNRKDMLEDDRYYTNSERLKNDSEVQEIVSNWIKKHNLKELTEILDNYGVPIS
PIYTIEDIFNDPHYQARDNIVEVEHPRLGKVKVPGVVPNFSKTPGKIRHRAPELGEHNEEILGNHLGLSEAEISTLKEQG
VI

Sequences:

>Translated_402_residues
MNNNNYGPLTGLKILDISTMIAAPFGATLLADLGGDVTKIELPGKGDTLRTVGPWKDGEALRWPGLARNKKSLTLDIRKE
AGKNIFKKLIAQTDVLIENFRPGTLEKWGLSYEELKEENPQLIMVRLSGYGQTGPYSKKAGFGTPATAFSGHTAIQGYID
RPPVSPSYSLLDYITGVYVAFATVSALYHRDVHEEKEGQVVEMGLYESIFRMLEFLIAEYDQNKKVRDRSPGLSGHSSPA
GTYATKDGKFVVLVCSTDSTFDRLADAMNRKDMLEDDRYYTNSERLKNDSEVQEIVSNWIKKHNLKELTEILDNYGVPIS
PIYTIEDIFNDPHYQARDNIVEVEHPRLGKVKVPGVVPNFSKTPGKIRHRAPELGEHNEEILGNHLGLSEAEISTLKEQG
VI
>Mature_402_residues
MNNNNYGPLTGLKILDISTMIAAPFGATLLADLGGDVTKIELPGKGDTLRTVGPWKDGEALRWPGLARNKKSLTLDIRKE
AGKNIFKKLIAQTDVLIENFRPGTLEKWGLSYEELKEENPQLIMVRLSGYGQTGPYSKKAGFGTPATAFSGHTAIQGYID
RPPVSPSYSLLDYITGVYVAFATVSALYHRDVHEEKEGQVVEMGLYESIFRMLEFLIAEYDQNKKVRDRSPGLSGHSSPA
GTYATKDGKFVVLVCSTDSTFDRLADAMNRKDMLEDDRYYTNSERLKNDSEVQEIVSNWIKKHNLKELTEILDNYGVPIS
PIYTIEDIFNDPHYQARDNIVEVEHPRLGKVKVPGVVPNFSKTPGKIRHRAPELGEHNEEILGNHLGLSEAEISTLKEQG
VI

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=400, Percent_Identity=32.75, Blast_Score=224, Evalue=1e-58,
Organism=Homo sapiens, GI300863124, Length=426, Percent_Identity=31.2206572769953, Blast_Score=213, Evalue=2e-55,
Organism=Homo sapiens, GI300863126, Length=400, Percent_Identity=30.75, Blast_Score=190, Evalue=2e-48,
Organism=Homo sapiens, GI13376042, Length=426, Percent_Identity=27.4647887323944, Blast_Score=161, Evalue=8e-40,
Organism=Homo sapiens, GI266456254, Length=398, Percent_Identity=27.6381909547739, Blast_Score=142, Evalue=7e-34,
Organism=Homo sapiens, GI42794625, Length=398, Percent_Identity=27.6381909547739, Blast_Score=142, Evalue=8e-34,
Organism=Homo sapiens, GI266458393, Length=251, Percent_Identity=31.4741035856574, Blast_Score=113, Evalue=2e-25,
Organism=Homo sapiens, GI266458397, Length=248, Percent_Identity=31.0483870967742, Blast_Score=113, Evalue=3e-25,
Organism=Homo sapiens, GI42822893, Length=144, Percent_Identity=36.8055555555556, Blast_Score=98, Evalue=1e-20,
Organism=Homo sapiens, GI266458395, Length=144, Percent_Identity=36.8055555555556, Blast_Score=98, Evalue=1e-20,
Organism=Escherichia coli, GI87082093, Length=384, Percent_Identity=32.8125, Blast_Score=223, Evalue=2e-59,
Organism=Escherichia coli, GI1788717, Length=418, Percent_Identity=26.7942583732057, Blast_Score=158, Evalue=6e-40,
Organism=Escherichia coli, GI1786222, Length=405, Percent_Identity=28.641975308642, Blast_Score=153, Evalue=2e-38,
Organism=Caenorhabditis elegans, GI115535051, Length=336, Percent_Identity=26.1904761904762, Blast_Score=116, Evalue=2e-26,
Organism=Caenorhabditis elegans, GI32564160, Length=250, Percent_Identity=31.6, Blast_Score=110, Evalue=1e-24,
Organism=Drosophila melanogaster, GI24648431, Length=400, Percent_Identity=33, Blast_Score=214, Evalue=7e-56,
Organism=Drosophila melanogaster, GI24585488, Length=399, Percent_Identity=25.062656641604, Blast_Score=120, Evalue=1e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 44828; Mature: 44828

Theoretical pI: Translated: 6.03; Mature: 6.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNNNYGPLTGLKILDISTMIAAPFGATLLADLGGDVTKIELPGKGDTLRTVGPWKDGEA
CCCCCCCCCCCEEEEEHHHHHHCCCCHHHHHHCCCCEEEEEECCCCCCEEECCCCCCCCC
LRWPGLARNKKSLTLDIRKEAGKNIFKKLIAQTDVLIENFRPGTLEKWGLSYEELKEENP
EECCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCHHHHHCCCC
QLIMVRLSGYGQTGPYSKKAGFGTPATAFSGHTAIQGYIDRPPVSPSYSLLDYITGVYVA
CEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHH
FATVSALYHRDVHEEKEGQVVEMGLYESIFRMLEFLIAEYDQNKKVRDRSPGLSGHSSPA
HHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
GTYATKDGKFVVLVCSTDSTFDRLADAMNRKDMLEDDRYYTNSERLKNDSEVQEIVSNWI
CCEEECCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCHHHCCCHHHHHHHHHHHH
KKHNLKELTEILDNYGVPISPIYTIEDIFNDPHYQARDNIVEVEHPRLGKVKVPGVVPNF
HHCCHHHHHHHHHHCCCCCCCEEEHHHHHCCCCCCCCCCEEEECCCCCCCEECCCCCCCC
SKTPGKIRHRAPELGEHNEEILGNHLGLSEAEISTLKEQGVI
CCCCCHHHHCCCCCCCCCHHHHHHHCCCCHHHHHHHHHCCCC
>Mature Secondary Structure
MNNNNYGPLTGLKILDISTMIAAPFGATLLADLGGDVTKIELPGKGDTLRTVGPWKDGEA
CCCCCCCCCCCEEEEEHHHHHHCCCCHHHHHHCCCCEEEEEECCCCCCEEECCCCCCCCC
LRWPGLARNKKSLTLDIRKEAGKNIFKKLIAQTDVLIENFRPGTLEKWGLSYEELKEENP
EECCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCHHHHHCCCC
QLIMVRLSGYGQTGPYSKKAGFGTPATAFSGHTAIQGYIDRPPVSPSYSLLDYITGVYVA
CEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHH
FATVSALYHRDVHEEKEGQVVEMGLYESIFRMLEFLIAEYDQNKKVRDRSPGLSGHSSPA
HHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
GTYATKDGKFVVLVCSTDSTFDRLADAMNRKDMLEDDRYYTNSERLKNDSEVQEIVSNWI
CCEEECCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCHHHCCCHHHHHHHHHHHH
KKHNLKELTEILDNYGVPISPIYTIEDIFNDPHYQARDNIVEVEHPRLGKVKVPGVVPNF
HHCCHHHHHHHHHHCCCCCCCEEEHHHHHCCCCCCCCCCEEEECCCCCCCEECCCCCCCC
SKTPGKIRHRAPELGEHNEEILGNHLGLSEAEISTLKEQGVI
CCCCCHHHHCCCCCCCCCHHHHHHHCCCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]