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The map label for this gene is csrA

Identifier: 23099958

GI number: 23099958

Start: 2561561

End: 2561785

Strand: Reverse

Name: csrA

Synonym: OB2503

Alternate gene names: 23099958

Gene position: 2561785-2561561 (Counterclockwise)

Preceding gene: 23099959

Following gene: 23099957

Centisome position: 70.56

GC content: 28.0

Gene sequence:

>225_bases
ATGCTTGTACTAACACGAAAACAAAGTGAAGCTATTCAAATTGGGGAAGATATAGAGATTGAAGTAATTGCAATTGAAGG
AGAGCAAGTTAAATTAGGAATTCGTGCTCCAAAATCAGTTGATATTTATCGAAAAGAAATATATGTAGATATTACGAATC
AAAACAACGAAGCTGCCATCATAGATAAAAATTTACTTCAATTTTTAAAAAATAATAATTCATAA

Upstream 100 bases:

>100_bases
TTAATATGAAAAAGCAACTAGCGAAGCAATATGTACTGAATCTAGATGAATACTCTTCTCAAGCTTCTATACAATCGCCT
CCACTAAAGGAGGGAGAATA

Downstream 100 bases:

>100_bases
ATACATCTTAAAACAAAACTTGATTTGACCGATATATAAATAAATCAATGAGGAGTGTAACTACAATGACAGTGAATAAT
ATTGGAGCTAGTAAACCAGC

Product: carbon storage regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 74; Mature: 74

Protein sequence:

>74_residues
MLVLTRKQSEAIQIGEDIEIEVIAIEGEQVKLGIRAPKSVDIYRKEIYVDITNQNNEAAIIDKNLLQFLKNNNS

Sequences:

>Translated_74_residues
MLVLTRKQSEAIQIGEDIEIEVIAIEGEQVKLGIRAPKSVDIYRKEIYVDITNQNNEAAIIDKNLLQFLKNNNS
>Mature_74_residues
MLVLTRKQSEAIQIGEDIEIEVIAIEGEQVKLGIRAPKSVDIYRKEIYVDITNQNNEAAIIDKNLLQFLKNNNS

Specific function: Could accelerate the degradation of some genes transcripts potentially through selective RNA binding

COG id: COG1551

COG function: function code T; Carbon storage regulator (could also regulate swarming and quorum sensing)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CsrA family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CSRA_OCEIH (Q8ENI0)

Other databases:

- EMBL:   BA000028
- RefSeq:   NP_693424.1
- ProteinModelPortal:   Q8ENI0
- SMR:   Q8ENI0
- GeneID:   1015182
- GenomeReviews:   BA000028_GR
- KEGG:   oih:OB2503
- NMPDR:   fig|221109.1.peg.2502
- HOGENOM:   HBG724655
- OMA:   SVCVDES
- ProtClustDB:   PRK01712
- BioCyc:   OIHE221109:OB2503-MONOMER
- HAMAP:   MF_00167
- InterPro:   IPR003751
- ProDom:   PD009007
- TIGRFAMs:   TIGR00202

Pfam domain/function: PF02599 CsrA

EC number: NA

Molecular weight: Translated: 8413; Mature: 8413

Theoretical pI: Translated: 4.54; Mature: 4.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLVLTRKQSEAIQIGEDIEIEVIAIEGEQVKLGIRAPKSVDIYRKEIYVDITNQNNEAAI
CEEEECCCCCEEECCCCCEEEEEEECCCEEEEEEECCCCCEEEEEEEEEEEECCCCCEEE
IDKNLLQFLKNNNS
EEHHHHHHHHCCCC
>Mature Secondary Structure
MLVLTRKQSEAIQIGEDIEIEVIAIEGEQVKLGIRAPKSVDIYRKEIYVDITNQNNEAAI
CEEEECCCCCEEECCCCCEEEEEEECCCEEEEEEECCCCCEEEEEEEEEEEECCCCCEEE
IDKNLLQFLKNNNS
EEHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12235376