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The map label for this gene is ytrP [H]

Identifier: 23099659

GI number: 23099659

Start: 2238816

End: 2240591

Strand: Reverse

Name: ytrP [H]

Synonym: OB2204

Alternate gene names: 23099659

Gene position: 2240591-2238816 (Counterclockwise)

Preceding gene: 23099661

Following gene: 23099658

Centisome position: 61.72

GC content: 30.97

Gene sequence:

>1776_bases
TTGCACGTTTCGAATCAATCACGAAGTAAATTTATAGAACAGCTATACCGTAATATGTCTGATTTTATTGAAAATAAGAA
TTTAAATTGGATTCCTTCATTAATCGATACAATTGGTACGTATTTAAACTGTAGGGATATTACGGTTTATGAGTGGAATG
AAAGTGAATCTTGTTATTATTTAAATTACCATTCTAATAATAATAAAGTACCTTATGTATTAATGGCAAATCATTTTGAA
GTTGTTCATGATAAATCAACTATAATTTTAAAGTTAGATTCCTATTTATGCCCTTGGGTTATTATTATAAATAATACTCC
GAACGATAGCATGGATCAATTAAAAGTCAATATTGTAAAAATAGAAGTCAACAAATTTCTTAGTACTTTTGCATCTATTT
CACATAATATACATATGTCTCTATTCAATAATCGGCTTTTGGAATTAAATAATGAATTATCAGGTTCCACTCACAGTTCA
TTTGTATTCCAAAAAATAACTGAAGTTATCCAATCAGCATTCCATGATATTACAGTAACCTATTTGGTAACTCAGGATTT
TACCGTTCCTGATCATATAAACGTAAAAATAATGACTTGGAATGACGCGACACTCAGTAGAGAAGTGAAACAAACTTTTA
TGAGCGGTCTTATGCAATTTGATAATGATAATTCAACCGTTTACTTACCTATTACGGGTAAGCAAGGTAACTATGGAGTT
ATTGAAATGCAAGGAAGCCTTATAAATGGAATGAATAATAATGAAAAATATTTTTTGACTGAAGTTGCAAAAGTGTGTGG
TAAATCGTTAGAAACAGCTTTTTTATTTCAACATTCTAGAAATAAAATCGATCAATTAACGATGATAAATCAAACAACTA
ATCATTTAAATTCTAGATTAGATTTTCGTGAGATTATTAATACGTTAAAGGATCAGTTTGCTTCTTATTCTTCAGACTCT
ACTTTTGCTATCTTACCGTTAGATGGTAATTATGCTGCAACAAGTGTAGGTAATGATTCGTACTTTGAAAAAGAAGAAGG
AATGTTGTTTCTTGATAACTTGAAAACCTATACGAAAAATTATGAAGAAACATTTTTTAGTGGTAATTTTAAAGATAATG
AGCCTGCTTCTATATTTCAATCAGTTATGGCAGTTCCCATGAAACATGAAAATAGCTTAATTGGAATTGTATTTATAGGA
CATAAAGATGAATATCAATATGATTATCATCAATATAAATTAATGGAAAGTATGATACAGCATTCAGTAGTAGCTTTTGC
AAATTCATTGCAGAAAGAACAGCTTACAAAAGCATTGGCTGTAGATCATCTAACTGGACTATACTCGAGGAAATATTTAG
AAGAAACGGTAACTAATCATATGCAAGAAGGAAATAAAGGTGCGTTAATGCTATTTGATATTGATGATTTCAAACGAGTA
AATGACTCGTATGGACATTTAATTGGAGATCAAGTGCTAATTCAAGTTGCAGAGGCCTTACAGGAAGTAGTAGCGGATAA
TTATATAGCTGCTAGGTGGGGGGGAGAAGAGCTTGCTATATATGCTAAGCAAATTTCTCTTGAAGAAGCAATAAGAATTT
CTAAAGAAGCTTGTGAGATTGTAGAGCATACAACCAATCCACGTGTGACAATTTCTTCGGGAGTATCATCTTGGTCAAGT
GATGAAAATGATACTGCAAACACGATATGGGAAAGATCTGACAAAGCTTTGTACGAAGCAAAGGAACTCGGGAAGAATAA
AGTGGTATATAAATAG

Upstream 100 bases:

>100_bases
GGAAAATTTGACTAGTTGATGTATAATTATAGTAGAAAATAATCGATTTGGTGATTTAATTTTAAATAATTCGTTTAGCT
ATGAAGAAAAGGTGATTATT

Downstream 100 bases:

>100_bases
AAGCATTTGAATCTGTTATATGCTAAAATTTTATTATACTCAATAATAGTAAAAACCAAGTTGAACGATTAACTGAAGCA
TCTAGCTTTACGGATAATCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 591; Mature: 591

Protein sequence:

>591_residues
MHVSNQSRSKFIEQLYRNMSDFIENKNLNWIPSLIDTIGTYLNCRDITVYEWNESESCYYLNYHSNNNKVPYVLMANHFE
VVHDKSTIILKLDSYLCPWVIIINNTPNDSMDQLKVNIVKIEVNKFLSTFASISHNIHMSLFNNRLLELNNELSGSTHSS
FVFQKITEVIQSAFHDITVTYLVTQDFTVPDHINVKIMTWNDATLSREVKQTFMSGLMQFDNDNSTVYLPITGKQGNYGV
IEMQGSLINGMNNNEKYFLTEVAKVCGKSLETAFLFQHSRNKIDQLTMINQTTNHLNSRLDFREIINTLKDQFASYSSDS
TFAILPLDGNYAATSVGNDSYFEKEEGMLFLDNLKTYTKNYEETFFSGNFKDNEPASIFQSVMAVPMKHENSLIGIVFIG
HKDEYQYDYHQYKLMESMIQHSVVAFANSLQKEQLTKALAVDHLTGLYSRKYLEETVTNHMQEGNKGALMLFDIDDFKRV
NDSYGHLIGDQVLIQVAEALQEVVADNYIAARWGGEELAIYAKQISLEEAIRISKEACEIVEHTTNPRVTISSGVSSWSS
DENDTANTIWERSDKALYEAKELGKNKVVYK

Sequences:

>Translated_591_residues
MHVSNQSRSKFIEQLYRNMSDFIENKNLNWIPSLIDTIGTYLNCRDITVYEWNESESCYYLNYHSNNNKVPYVLMANHFE
VVHDKSTIILKLDSYLCPWVIIINNTPNDSMDQLKVNIVKIEVNKFLSTFASISHNIHMSLFNNRLLELNNELSGSTHSS
FVFQKITEVIQSAFHDITVTYLVTQDFTVPDHINVKIMTWNDATLSREVKQTFMSGLMQFDNDNSTVYLPITGKQGNYGV
IEMQGSLINGMNNNEKYFLTEVAKVCGKSLETAFLFQHSRNKIDQLTMINQTTNHLNSRLDFREIINTLKDQFASYSSDS
TFAILPLDGNYAATSVGNDSYFEKEEGMLFLDNLKTYTKNYEETFFSGNFKDNEPASIFQSVMAVPMKHENSLIGIVFIG
HKDEYQYDYHQYKLMESMIQHSVVAFANSLQKEQLTKALAVDHLTGLYSRKYLEETVTNHMQEGNKGALMLFDIDDFKRV
NDSYGHLIGDQVLIQVAEALQEVVADNYIAARWGGEELAIYAKQISLEEAIRISKEACEIVEHTTNPRVTISSGVSSWSS
DENDTANTIWERSDKALYEAKELGKNKVVYK
>Mature_591_residues
MHVSNQSRSKFIEQLYRNMSDFIENKNLNWIPSLIDTIGTYLNCRDITVYEWNESESCYYLNYHSNNNKVPYVLMANHFE
VVHDKSTIILKLDSYLCPWVIIINNTPNDSMDQLKVNIVKIEVNKFLSTFASISHNIHMSLFNNRLLELNNELSGSTHSS
FVFQKITEVIQSAFHDITVTYLVTQDFTVPDHINVKIMTWNDATLSREVKQTFMSGLMQFDNDNSTVYLPITGKQGNYGV
IEMQGSLINGMNNNEKYFLTEVAKVCGKSLETAFLFQHSRNKIDQLTMINQTTNHLNSRLDFREIINTLKDQFASYSSDS
TFAILPLDGNYAATSVGNDSYFEKEEGMLFLDNLKTYTKNYEETFFSGNFKDNEPASIFQSVMAVPMKHENSLIGIVFIG
HKDEYQYDYHQYKLMESMIQHSVVAFANSLQKEQLTKALAVDHLTGLYSRKYLEETVTNHMQEGNKGALMLFDIDDFKRV
NDSYGHLIGDQVLIQVAEALQEVVADNYIAARWGGEELAIYAKQISLEEAIRISKEACEIVEHTTNPRVTISSGVSSWSS
DENDTANTIWERSDKALYEAKELGKNKVVYK

Specific function: Unknown

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GGDEF domain [H]

Homologues:

Organism=Escherichia coli, GI1787816, Length=182, Percent_Identity=34.6153846153846, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1787262, Length=181, Percent_Identity=35.9116022099448, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI87081881, Length=168, Percent_Identity=34.5238095238095, Blast_Score=94, Evalue=3e-20,
Organism=Escherichia coli, GI1788085, Length=201, Percent_Identity=31.3432835820896, Blast_Score=86, Evalue=7e-18,
Organism=Escherichia coli, GI1787802, Length=180, Percent_Identity=33.8888888888889, Blast_Score=86, Evalue=9e-18,
Organism=Escherichia coli, GI1787056, Length=149, Percent_Identity=32.2147651006711, Blast_Score=83, Evalue=5e-17,
Organism=Escherichia coli, GI1786584, Length=167, Percent_Identity=28.7425149700599, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI1787541, Length=167, Percent_Identity=29.940119760479, Blast_Score=70, Evalue=4e-13,
Organism=Escherichia coli, GI87081974, Length=149, Percent_Identity=30.8724832214765, Blast_Score=69, Evalue=6e-13,
Organism=Escherichia coli, GI145693134, Length=175, Percent_Identity=25.1428571428571, Blast_Score=69, Evalue=1e-12,
Organism=Escherichia coli, GI1788956, Length=167, Percent_Identity=28.7425149700599, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI87082007, Length=158, Percent_Identity=29.746835443038, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI1788381, Length=171, Percent_Identity=29.8245614035088, Blast_Score=63, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR003018 [H]

Pfam domain/function: PF00990 GGDEF [H]

EC number: NA

Molecular weight: Translated: 67740; Mature: 67740

Theoretical pI: Translated: 5.04; Mature: 5.04

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHVSNQSRSKFIEQLYRNMSDFIENKNLNWIPSLIDTIGTYLNCRDITVYEWNESESCYY
CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHEEECEEEEEEECCCCCEEE
LNYHSNNNKVPYVLMANHFEVVHDKSTIILKLDSYLCPWVIIINNTPNDSMDQLKVNIVK
EEEECCCCCCCEEEEECCEEEEECCCEEEEEECCCCCCEEEEEECCCCCCCCCEEEEEEE
IEVNKFLSTFASISHNIHMSLFNNRLLELNNELSGSTHSSFVFQKITEVIQSAFHDITVT
EEHHHHHHHHHHHCCCEEEEHHCCHHHEECCCCCCCCHHHHHHHHHHHHHHHHHHCEEEE
YLVTQDFTVPDHINVKIMTWNDATLSREVKQTFMSGLMQFDNDNSTVYLPITGKQGNYGV
EEEEECCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCEEE
IEMQGSLINGMNNNEKYFLTEVAKVCGKSLETAFLFQHSRNKIDQLTMINQTTNHLNSRL
EEECCCEECCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHCCCHHHHEEHHHHHHHHHCCC
DFREIINTLKDQFASYSSDSTFAILPLDGNYAATSVGNDSYFEKEEGMLFLDNLKTYTKN
CHHHHHHHHHHHHHCCCCCCEEEEEEECCCEEEEECCCCCCCCCCCCEEEEECHHHHHCC
YEETFFSGNFKDNEPASIFQSVMAVPMKHENSLIGIVFIGHKDEYQYDYHQYKLMESMIQ
HHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHH
HSVVAFANSLQKEQLTKALAVDHLTGLYSRKYLEETVTNHMQEGNKGALMLFDIDDFKRV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHC
NDSYGHLIGDQVLIQVAEALQEVVADNYIAARWGGEELAIYAKQISLEEAIRISKEACEI
CCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCEEEEEEHHHCHHHHHHHHHHHHHH
VEHTTNPRVTISSGVSSWSSDENDTANTIWERSDKALYEAKELGKNKVVYK
HHCCCCCCEEEECCCCCCCCCCCCCHHHHHHCCCHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MHVSNQSRSKFIEQLYRNMSDFIENKNLNWIPSLIDTIGTYLNCRDITVYEWNESESCYY
CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHEEECEEEEEEECCCCCEEE
LNYHSNNNKVPYVLMANHFEVVHDKSTIILKLDSYLCPWVIIINNTPNDSMDQLKVNIVK
EEEECCCCCCCEEEEECCEEEEECCCEEEEEECCCCCCEEEEEECCCCCCCCCEEEEEEE
IEVNKFLSTFASISHNIHMSLFNNRLLELNNELSGSTHSSFVFQKITEVIQSAFHDITVT
EEHHHHHHHHHHHCCCEEEEHHCCHHHEECCCCCCCCHHHHHHHHHHHHHHHHHHCEEEE
YLVTQDFTVPDHINVKIMTWNDATLSREVKQTFMSGLMQFDNDNSTVYLPITGKQGNYGV
EEEEECCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCEEE
IEMQGSLINGMNNNEKYFLTEVAKVCGKSLETAFLFQHSRNKIDQLTMINQTTNHLNSRL
EEECCCEECCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHCCCHHHHEEHHHHHHHHHCCC
DFREIINTLKDQFASYSSDSTFAILPLDGNYAATSVGNDSYFEKEEGMLFLDNLKTYTKN
CHHHHHHHHHHHHHCCCCCCEEEEEEECCCEEEEECCCCCCCCCCCCEEEEECHHHHHCC
YEETFFSGNFKDNEPASIFQSVMAVPMKHENSLIGIVFIGHKDEYQYDYHQYKLMESMIQ
HHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHH
HSVVAFANSLQKEQLTKALAVDHLTGLYSRKYLEETVTNHMQEGNKGALMLFDIDDFKRV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHC
NDSYGHLIGDQVLIQVAEALQEVVADNYIAARWGGEELAIYAKQISLEEAIRISKEACEI
CCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCEEEEEEHHHCHHHHHHHHHHHHHH
VEHTTNPRVTISSGVSSWSSDENDTANTIWERSDKALYEAKELGKNKVVYK
HHCCCCCCEEEECCCCCCCCCCCCCHHHHHHCCCHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1699930; 9387221; 9384377 [H]