Click here to switch to the map view.

The map label for this gene is ysdC [H]

Identifier: 23099598

GI number: 23099598

Start: 2177719

End: 2178804

Strand: Reverse

Name: ysdC [H]

Synonym: OB2143

Alternate gene names: 23099598

Gene position: 2178804-2177719 (Counterclockwise)

Preceding gene: 23099599

Following gene: 23099597

Centisome position: 60.01

GC content: 37.66

Gene sequence:

>1086_bases
ATGGCTAATCTAGATGATACATTGACAATGCTAAAGGAACTTACTGATGCTAAAGGTATTCCTGGCAATGAAAAAGAGGT
GCGCGAAGTATTTGAAAAATATATCACACCTTATTCTGATGATGTAACAAAGGATAATTTAGGGAGTTCCATTGCTAAAA
AAGTCGGTGATGTTAATGGACCTAAGATTATGATTGCAGGACATCTGGATGAAATTGGGATGATGGTTACTCGTATCGAT
GATAACGGTTTTATTTATTTCCAAACTGTTGGAGGCTGGTGGAATCAGGTTATGCTAGCTCAACGAGTTACTATTATGGG
AGATAAAGGCGATGTAACTGGAGTGATTGGATCAAAACCACCTCATGTATTATCAGCAGAAGCACGAAAGAAACCGTATC
AAATTAAGGATATGTTTATTGATGTTGGAGCATCAAATAAGGATGAGGTGAAATCATTTGGTATCAAACCAGGTGATTCT
ATTGTGCCTTATTTTGAATTTACACCAATGAAGAATGAAAAAATGCTCTTAGCAAAAGCTTGGGATAATCGTATCGGGTT
AGCGATTGCTATCGATGTTCTGAGAAAGCTAAAAGATGAAAAGCATCCAAATACCGTATATGGAGTAGGTACTATTCAAG
AAGAGATTGGCTTAAGAGGTGCCCGCACCTCTGCTCATTCTATCCAGCCAGATATTGGTTTTGGCGTTGATGTTGGTATT
GCTGGAGACACTCCTGGAATTTCAAAGCAAGAAGCAGATAGCAAGTTAGGCGAAGGTCCTCAAATCGTCTTGTATGATGC
GTCCATGGTTTCTCATAAAGGGTTACGTGATTTAGTGGTACAAACCGCAGAAGATAATCAAATCCCTTATCAATTTACAT
CCATGGCTGGTGGAGGAACAGATTCAGGAGCTATTCACCTTACAGGAAATGGAGTACCATCATTATCTATAACTGTCGCA
ACTCGTTACATTCATTCGAATGCCGGGATTTTACATCGTGATGATTATGAAAATGCAGTTAAATTAATTGTAGAAGTAGT
TAAAAAACTCGATAAAGATATGTTGGATAATATAAGATTATCTTAA

Upstream 100 bases:

>100_bases
TTCAGAAGAAGATATTCAACGCGCATATCTTGAAAAAAACGAGATAAATTATAAAAGGCAAAATCAAGGATATTAATCTG
TAAATAGGAGGAGACTACAT

Downstream 100 bases:

>100_bases
AAACAGTATTGTTATCATAGTTGAATAATGAGTACCGACTTTTTACTAAGTTGGTACTTTTTTTATATAGTGGATTTGAC
AAATCCAATGGAAGTTATTA

Product: endo-1,4-beta-glucanase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 361; Mature: 360

Protein sequence:

>361_residues
MANLDDTLTMLKELTDAKGIPGNEKEVREVFEKYITPYSDDVTKDNLGSSIAKKVGDVNGPKIMIAGHLDEIGMMVTRID
DNGFIYFQTVGGWWNQVMLAQRVTIMGDKGDVTGVIGSKPPHVLSAEARKKPYQIKDMFIDVGASNKDEVKSFGIKPGDS
IVPYFEFTPMKNEKMLLAKAWDNRIGLAIAIDVLRKLKDEKHPNTVYGVGTIQEEIGLRGARTSAHSIQPDIGFGVDVGI
AGDTPGISKQEADSKLGEGPQIVLYDASMVSHKGLRDLVVQTAEDNQIPYQFTSMAGGGTDSGAIHLTGNGVPSLSITVA
TRYIHSNAGILHRDDYENAVKLIVEVVKKLDKDMLDNIRLS

Sequences:

>Translated_361_residues
MANLDDTLTMLKELTDAKGIPGNEKEVREVFEKYITPYSDDVTKDNLGSSIAKKVGDVNGPKIMIAGHLDEIGMMVTRID
DNGFIYFQTVGGWWNQVMLAQRVTIMGDKGDVTGVIGSKPPHVLSAEARKKPYQIKDMFIDVGASNKDEVKSFGIKPGDS
IVPYFEFTPMKNEKMLLAKAWDNRIGLAIAIDVLRKLKDEKHPNTVYGVGTIQEEIGLRGARTSAHSIQPDIGFGVDVGI
AGDTPGISKQEADSKLGEGPQIVLYDASMVSHKGLRDLVVQTAEDNQIPYQFTSMAGGGTDSGAIHLTGNGVPSLSITVA
TRYIHSNAGILHRDDYENAVKLIVEVVKKLDKDMLDNIRLS
>Mature_360_residues
ANLDDTLTMLKELTDAKGIPGNEKEVREVFEKYITPYSDDVTKDNLGSSIAKKVGDVNGPKIMIAGHLDEIGMMVTRIDD
NGFIYFQTVGGWWNQVMLAQRVTIMGDKGDVTGVIGSKPPHVLSAEARKKPYQIKDMFIDVGASNKDEVKSFGIKPGDSI
VPYFEFTPMKNEKMLLAKAWDNRIGLAIAIDVLRKLKDEKHPNTVYGVGTIQEEIGLRGARTSAHSIQPDIGFGVDVGIA
GDTPGISKQEADSKLGEGPQIVLYDASMVSHKGLRDLVVQTAEDNQIPYQFTSMAGGGTDSGAIHLTGNGVPSLSITVAT
RYIHSNAGILHRDDYENAVKLIVEVVKKLDKDMLDNIRLS

Specific function: Putative aminopeptidase [H]

COG id: COG1363

COG function: function code G; Cellulase M and related proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M42 family [H]

Homologues:

Organism=Escherichia coli, GI1790332, Length=337, Percent_Identity=40.6528189910979, Blast_Score=281, Evalue=7e-77,
Organism=Escherichia coli, GI1788727, Length=346, Percent_Identity=30.9248554913295, Blast_Score=173, Evalue=1e-44,
Organism=Escherichia coli, GI87082417, Length=341, Percent_Identity=28.7390029325513, Blast_Score=158, Evalue=4e-40,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008007 [H]

Pfam domain/function: PF05343 Peptidase_M42 [H]

EC number: NA

Molecular weight: Translated: 39332; Mature: 39201

Theoretical pI: Translated: 5.45; Mature: 5.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANLDDTLTMLKELTDAKGIPGNEKEVREVFEKYITPYSDDVTKDNLGSSIAKKVGDVNG
CCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCC
PKIMIAGHLDEIGMMVTRIDDNGFIYFQTVGGWWNQVMLAQRVTIMGDKGDVTGVIGSKP
CEEEEEECCHHHCEEEEEECCCCEEEEEECCCHHHHHHHHHHEEEECCCCCEEEECCCCC
PHVLSAEARKKPYQIKDMFIDVGASNKDEVKSFGIKPGDSIVPYFEFTPMKNEKMLLAKA
CCEECCHHHCCCCEEEEEEEECCCCCHHHHHHCCCCCCCCCCCEEEECCCCCCCEEEEEE
WDNRIGLAIAIDVLRKLKDEKHPNTVYGVGTIQEEIGLRGARTSAHSIQPDIGFGVDVGI
CCCCCCHHHHHHHHHHHHHCCCCCEEEECCCHHHHHCCCCCCCCCCCCCCCCCCCEEEEE
AGDTPGISKQEADSKLGEGPQIVLYDASMVSHKGLRDLVVQTAEDNQIPYQFTSMAGGGT
CCCCCCCCHHHHHHHCCCCCEEEEEECHHHHHCCHHHHHHCCCCCCCCCEEEEECCCCCC
DSGAIHLTGNGVPSLSITVATRYIHSNAGILHRDDYENAVKLIVEVVKKLDKDMLDNIRL
CCCEEEEECCCCCCEEEEEEEEEEECCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHCCC
S
C
>Mature Secondary Structure 
ANLDDTLTMLKELTDAKGIPGNEKEVREVFEKYITPYSDDVTKDNLGSSIAKKVGDVNG
CCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCC
PKIMIAGHLDEIGMMVTRIDDNGFIYFQTVGGWWNQVMLAQRVTIMGDKGDVTGVIGSKP
CEEEEEECCHHHCEEEEEECCCCEEEEEECCCHHHHHHHHHHEEEECCCCCEEEECCCCC
PHVLSAEARKKPYQIKDMFIDVGASNKDEVKSFGIKPGDSIVPYFEFTPMKNEKMLLAKA
CCEECCHHHCCCCEEEEEEEECCCCCHHHHHHCCCCCCCCCCCEEEECCCCCCCEEEEEE
WDNRIGLAIAIDVLRKLKDEKHPNTVYGVGTIQEEIGLRGARTSAHSIQPDIGFGVDVGI
CCCCCCHHHHHHHHHHHHHCCCCCEEEECCCHHHHHCCCCCCCCCCCCCCCCCCCEEEEE
AGDTPGISKQEADSKLGEGPQIVLYDASMVSHKGLRDLVVQTAEDNQIPYQFTSMAGGGT
CCCCCCCCHHHHHHHCCCCCEEEEEECHHHHHCCHHHHHHCCCCCCCCCEEEEECCCCCC
DSGAIHLTGNGVPSLSITVATRYIHSNAGILHRDDYENAVKLIVEVVKKLDKDMLDNIRL
CCCEEEEECCCCCCEEEEEEEEEEECCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHCCC
S
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]