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The map label for this gene is radC [C]

Identifier: 23099511

GI number: 23099511

Start: 2081757

End: 2082332

Strand: Reverse

Name: radC [C]

Synonym: OB2056

Alternate gene names: 23099511

Gene position: 2082332-2081757 (Counterclockwise)

Preceding gene: 23099512

Following gene: 23099510

Centisome position: 57.36

GC content: 36.11

Gene sequence:

>576_bases
ATGAAAACCACGGTACTTACTATGAAGAACGTACCCAAAGAAGATCGACCTAGAGAAAGATTGCTAAAGCATGGAGCATC
TCATTTATCGAATCAAGAAATACTATCCATTCTTATTGGTAGCGGAACAAAACAAGATTCAGTAAATGTATTATCTAATC
GAATTTTAATGCATTTTGAGGGGATGAAATTAATAAGAGATGCGACTATTGAAGAACTTATAGCAATTAAAGGTATTGGC
ACAGCGAAAGGACTTATCATTCTTGCTGCTATCGAGTTAGGGAAAAGATTGAATACCTATAAGCCCGATGGTCCTTATGT
TATCCGGTCTCCTGAAGACGGTGCTAGTTACATCATGGAAGAGATGCGTTATTTAAGTCAGGAACATTTTGTAGTTTTAT
TTCTAAATACAAAAAATCAAATTATTCATTATCAAACAGTTTTTATAGGTAGTTTAAATGCCTCGATAGTGCACCCTAGA
GAGGTTTTTAAAGAAGCAGTTAAACGTTCTGCAGCATCATTAATTGTAGCCCACAATCACCCGAGTGGTGTGCGCCTGCA
AGGTGTAATTATATAG

Upstream 100 bases:

>100_bases
ATATAAAATTTAGTGTATGAAATCCAAACTAAAATATTATTTTTTATATTTGTTGTTACACTCTTCTACCGATATGCTAT
ACAAAGAAAGGAGGGAGAAG

Downstream 100 bases:

>100_bases
TGATACACAAAGTATCTAGAACTCCTTACAATGTTCTATGGTCAGCATCTTACTTTAATTGGGAAACCAATTAGGGGACA
ATAGCATGATGTGAAAAGAA

Product: DNA repair protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 191; Mature: 191

Protein sequence:

>191_residues
MKTTVLTMKNVPKEDRPRERLLKHGASHLSNQEILSILIGSGTKQDSVNVLSNRILMHFEGMKLIRDATIEELIAIKGIG
TAKGLIILAAIELGKRLNTYKPDGPYVIRSPEDGASYIMEEMRYLSQEHFVVLFLNTKNQIIHYQTVFIGSLNASIVHPR
EVFKEAVKRSAASLIVAHNHPSGVRLQGVII

Sequences:

>Translated_191_residues
MKTTVLTMKNVPKEDRPRERLLKHGASHLSNQEILSILIGSGTKQDSVNVLSNRILMHFEGMKLIRDATIEELIAIKGIG
TAKGLIILAAIELGKRLNTYKPDGPYVIRSPEDGASYIMEEMRYLSQEHFVVLFLNTKNQIIHYQTVFIGSLNASIVHPR
EVFKEAVKRSAASLIVAHNHPSGVRLQGVII
>Mature_191_residues
MKTTVLTMKNVPKEDRPRERLLKHGASHLSNQEILSILIGSGTKQDSVNVLSNRILMHFEGMKLIRDATIEELIAIKGIG
TAKGLIILAAIELGKRLNTYKPDGPYVIRSPEDGASYIMEEMRYLSQEHFVVLFLNTKNQIIHYQTVFIGSLNASIVHPR
EVFKEAVKRSAASLIVAHNHPSGVRLQGVII

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family [H]

Homologues:

Organism=Escherichia coli, GI87082300, Length=177, Percent_Identity=33.3333333333333, Blast_Score=109, Evalue=1e-25,
Organism=Escherichia coli, GI1788997, Length=74, Percent_Identity=44.5945945945946, Blast_Score=74, Evalue=4e-15,
Organism=Escherichia coli, GI1788312, Length=67, Percent_Identity=47.7611940298507, Blast_Score=73, Evalue=1e-14,
Organism=Escherichia coli, GI2367100, Length=67, Percent_Identity=47.7611940298507, Blast_Score=72, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003583
- InterPro:   IPR010994
- InterPro:   IPR001405
- InterPro:   IPR020891 [H]

Pfam domain/function: PF04002 DUF2466 [H]

EC number: NA

Molecular weight: Translated: 21319; Mature: 21319

Theoretical pI: Translated: 10.14; Mature: 10.14

Prosite motif: PS01302 RADC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTTVLTMKNVPKEDRPRERLLKHGASHLSNQEILSILIGSGTKQDSVNVLSNRILMHFE
CCCEEEEECCCCCCCCHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCHHHHHHHHHHEEEC
GMKLIRDATIEELIAIKGIGTAKGLIILAAIELGKRLNTYKPDGPYVIRSPEDGASYIME
CHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEECCCCHHHHHHH
EMRYLSQEHFVVLFLNTKNQIIHYQTVFIGSLNASIVHPREVFKEAVKRSAASLIVAHNH
HHHHHCCCCEEEEEECCCCCEEEEEEEEEECCCCCEECHHHHHHHHHHHHHHEEEEEECC
PSGVRLQGVII
CCCEEEEEEEC
>Mature Secondary Structure
MKTTVLTMKNVPKEDRPRERLLKHGASHLSNQEILSILIGSGTKQDSVNVLSNRILMHFE
CCCEEEEECCCCCCCCHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCHHHHHHHHHHEEEC
GMKLIRDATIEELIAIKGIGTAKGLIILAAIELGKRLNTYKPDGPYVIRSPEDGASYIME
CHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEECCCCHHHHHHH
EMRYLSQEHFVVLFLNTKNQIIHYQTVFIGSLNASIVHPREVFKEAVKRSAASLIVAHNH
HHHHHCCCCEEEEEECCCCCEEEEEEEEEECCCCCEECHHHHHHHHHHHHHHEEEEEECC
PSGVRLQGVII
CCCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA