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The map label for this gene is yqgF [C]

Identifier: 23099462

GI number: 23099462

Start: 2030443

End: 2030856

Strand: Reverse

Name: yqgF [C]

Synonym: OB2007

Alternate gene names: 23099462

Gene position: 2030856-2030443 (Counterclockwise)

Preceding gene: 23099463

Following gene: 23099461

Centisome position: 55.94

GC content: 38.16

Gene sequence:

>414_bases
ATGAAAATAATTGGTTTAGATGTCGGCTCAAAAACGATTGGCGTTGCGGTTAGTGATGCATTAGGTTGGACTGCTCAAGG
AGTCAAAACCATTCGATGGGATGAAAATGATTTGTCCTCTGCCGATGAAGAATTAGAAAAAATAATAAGTGAACATGAAA
TAGGAAAAGCTATTATTGGTTTGCCTAAGAACATGAATGGTACTATTGGCGAACGTGGAGAAGCATCTCAACGCTATGCC
AACCACATTGAAAAAGTGTTTCAAATTCCCGTTGATCTATGGGATGAACGCTTAACAACAATGGCAGCTGAACGTGTTCT
ACTAGAAGCAGATATGAGTCGTAGTAAGCGAAAAAAAGTTATTGATAAAATGGCAGCTGTTATGATCCTACAGGGTTATT
TGGACCAAAAATAA

Upstream 100 bases:

>100_bases
CGCGGTATAACGATGCCAGAAATTTAATTCGTAAGGTAGAACGTGATGAAGTGATTGAAGAACTTGTTAAGTTTTATCTA
GAACAGAACAGGGAGACTAA

Downstream 100 bases:

>100_bases
ATAAATCCCTTCGGATGTTATAGCCAGCTAACCTTTAGGAAGGAGGATTTATATGGCACTAGAAGAAAAAGAACGAATTA
TTATTCCAGATGAAAATGGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 137; Mature: 137

Protein sequence:

>137_residues
MKIIGLDVGSKTIGVAVSDALGWTAQGVKTIRWDENDLSSADEELEKIISEHEIGKAIIGLPKNMNGTIGERGEASQRYA
NHIEKVFQIPVDLWDERLTTMAAERVLLEADMSRSKRKKVIDKMAAVMILQGYLDQK

Sequences:

>Translated_137_residues
MKIIGLDVGSKTIGVAVSDALGWTAQGVKTIRWDENDLSSADEELEKIISEHEIGKAIIGLPKNMNGTIGERGEASQRYA
NHIEKVFQIPVDLWDERLTTMAAERVLLEADMSRSKRKKVIDKMAAVMILQGYLDQK
>Mature_137_residues
MKIIGLDVGSKTIGVAVSDALGWTAQGVKTIRWDENDLSSADEELEKIISEHEIGKAIIGLPKNMNGTIGERGEASQRYA
NHIEKVFQIPVDLWDERLTTMAAERVLLEADMSRSKRKKVIDKMAAVMILQGYLDQK

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family

Homologues:

Organism=Escherichia coli, GI1789318, Length=134, Percent_Identity=33.5820895522388, Blast_Score=75, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RUVX_OCEIH (Q8EPT1)

Other databases:

- EMBL:   BA000028
- RefSeq:   NP_692928.1
- ProteinModelPortal:   Q8EPT1
- SMR:   Q8EPT1
- GeneID:   1018490
- GenomeReviews:   BA000028_GR
- KEGG:   oih:OB2007
- NMPDR:   fig|221109.1.peg.2006
- HOGENOM:   HBG607919
- OMA:   VLILQNY
- BioCyc:   OIHE221109:OB2007-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00651
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337
- Gene3D:   G3DSA:3.30.420.140
- SMART:   SM00732
- TIGRFAMs:   TIGR00250

Pfam domain/function: PF03652 UPF0081; SSF53098 RNaseH_fold

EC number: NA

Molecular weight: Translated: 15240; Mature: 15240

Theoretical pI: Translated: 5.30; Mature: 5.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIIGLDVGSKTIGVAVSDALGWTAQGVKTIRWDENDLSSADEELEKIISEHEIGKAIIG
CEEEEECCCCCHHHHHHHHHHCCHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHC
LPKNMNGTIGERGEASQRYANHIEKVFQIPVDLWDERLTTMAAERVLLEADMSRSKRKKV
CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IDKMAAVMILQGYLDQK
HHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKIIGLDVGSKTIGVAVSDALGWTAQGVKTIRWDENDLSSADEELEKIISEHEIGKAIIG
CEEEEECCCCCHHHHHHHHHHCCHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHC
LPKNMNGTIGERGEASQRYANHIEKVFQIPVDLWDERLTTMAAERVLLEADMSRSKRKKV
CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IDKMAAVMILQGYLDQK
HHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12235376